BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0009.p
         (59 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8X3.1 B3K8X3_9BACI Small acid-soluble spore protein (Minor al...   100   4e-20
A6CR41.1 A6CR41_9BACI Small acid-soluble spore protein (Minor al...    87   6e-16
C0ZHC8.1 C0ZHC8_BREBN Small acid-soluble spore protein                 85   2e-15
Q9KGK1.1 Q9KGK1_BACHD Small acid-soluble spore protein (Minor al...    85   2e-15
Q65PH6.1 Q65PH6_BACLD SspF                                             84   4e-15

>B3K8X3.1 B3K8X3_9BACI Small acid-soluble spore protein (Minor
          alpha/beta-type SASP)
          Length = 60

 Score =  100 bits (249), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 57/59 (96%)

Query: 1  MSRRKRGMMSEELKTELAKELGFYETVEREGWGGIRAKDAGNMVKRAIQLAEEAARRSE 59
          MSRR+R +MS++LKTELAKELGFY+TVE+EGWGGI+AKDAGNMVKRAI+LAE AAR+S+
Sbjct: 1  MSRRRRSIMSDQLKTELAKELGFYDTVEKEGWGGIKAKDAGNMVKRAIELAERAARKSD 59


>A6CR41.1 A6CR41_9BACI Small acid-soluble spore protein (Minor
          alpha/beta-type SASP)
          Length = 59

 Score = 86.7 bits (213), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/52 (80%), Positives = 49/52 (94%), Gaps = 1/52 (1%)

Query: 1  MSRRKRGMMSEELKTELAKELGFYETVEREGWGGIRAKDAGNMVKRAIQLAE 52
          MSRR RGMMSE LK E+AKELGFY+TV+REGWGGIR+KDAGNMVKRA++LA+
Sbjct: 1  MSRR-RGMMSERLKEEIAKELGFYDTVQREGWGGIRSKDAGNMVKRAVELAQ 51


>C0ZHC8.1 C0ZHC8_BREBN Small acid-soluble spore protein
          Length = 59

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/51 (76%), Positives = 46/51 (90%)

Query: 4  RKRGMMSEELKTELAKELGFYETVEREGWGGIRAKDAGNMVKRAIQLAEEA 54
          R+RG+MSE+ K ELAKELGFY+TV+ EGWGGI  +DAGNMVKRA+QLAEEA
Sbjct: 3  RRRGLMSEQFKMELAKELGFYDTVKSEGWGGITTRDAGNMVKRAVQLAEEA 53


>Q9KGK1.1 Q9KGK1_BACHD Small acid-soluble spore protein (Minor
          alpha/beta-type SASP)
          Length = 61

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 50/53 (94%), Gaps = 1/53 (1%)

Query: 1  MSRRKRGMMSEELKTELAKELGFYETVEREGWGGIRAKDAGNMVKRAIQLAEE 53
          MSRR RG+MS+ LK E+AKELGFY+TV++EGWGGIRA+DAGNMVKRAI+LAE+
Sbjct: 1  MSRR-RGIMSDRLKEEIAKELGFYDTVQQEGWGGIRARDAGNMVKRAIELAEQ 52


>Q65PH6.1 Q65PH6_BACLD SspF
          Length = 61

 Score = 84.0 bits (206), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 46/50 (92%)

Query: 4  RKRGMMSEELKTELAKELGFYETVEREGWGGIRAKDAGNMVKRAIQLAEE 53
          R+R +MSEE K ELAK+LGFY+TV+ EGWGGIRA+DAGNMVKRAI+LAE+
Sbjct: 3  RRRSIMSEEFKNELAKDLGFYDTVKTEGWGGIRARDAGNMVKRAIELAEQ 52


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.128    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 280,682,095
Number of extensions: 7494338
Number of successful extensions: 19389
Number of sequences better than 1.0e-05: 113
Number of HSP's gapped: 19392
Number of HSP's successfully gapped: 113
Length of query: 59
Length of database: 3,060,696,203
Length adjustment: 31
Effective length of query: 28
Effective length of database: 2,768,644,738
Effective search space: 77522052664
Effective search space used: 77522052664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)