BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0002.p (206 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8Y0.1 B3K8Y0_9BACI Peptidyl-tRNA hydrolase EC=3.1.1.29 335 2e-90 B1DIH8.1 B1DIH8_9BACL Peptidyl-tRNA hydrolase EC=3.1.1.29 272 1e-71 A9VN64.1 A9VN64_BACWK Peptidyl-tRNA hydrolase EC=3.1.1.29 219 1e-55 C2SDZ0.1 C2SDZ0_BACCE Peptidyl-tRNA hydrolase 219 1e-55 C2ZZY0.1 C2ZZY0_BACMY Peptidyl-tRNA hydrolase 219 1e-55 >B3K8Y0.1 B3K8Y0_9BACI Peptidyl-tRNA hydrolase EC=3.1.1.29 Length = 187 Score = 335 bits (858), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 156/185 (84%), Positives = 169/185 (91%) Query: 21 MKWIIGLGNPGPQYAKTKHNVGFMALDELAARHGIVFNQNKCKSVIGEGVIDGVKTVLIK 80 MKWI+GLGNPGP Y KT+HNVGFMALD LA RHG+ FNQNKCKSVI EG+I G KTVLIK Sbjct: 1 MKWIVGLGNPGPNYEKTRHNVGFMALDALAERHGLKFNQNKCKSVIAEGMIGGTKTVLIK 60 Query: 81 PMTFMNLSGEAVRAYMDYYKVQLEDMIVVYDDLDTELGKIRLRYQGSAGGHNGIKSIIQH 140 PMTFMNLSGEAVRAYMDYYKV LEDMIVVYDDLDT +GKIRLRYQGSAGGHNGIKSIIQH Sbjct: 61 PMTFMNLSGEAVRAYMDYYKVSLEDMIVVYDDLDTVVGKIRLRYQGSAGGHNGIKSIIQH 120 Query: 141 TGTQSFNRVRMGISRPEPGFAIVDYVLSTFPKKDGDKLEKMIQDTGSALEFSLKHTFEQT 200 TGTQSFNRVRMGISRPEPG+AIVDYVL TFPKK+ ++L+ M+++T ALEFSL HTFEQT Sbjct: 121 TGTQSFNRVRMGISRPEPGYAIVDYVLGTFPKKEREQLQHMVEETCDALEFSLGHTFEQT 180 Query: 201 MAKFN 205 MAKFN Sbjct: 181 MAKFN 185 >B1DIH8.1 B1DIH8_9BACL Peptidyl-tRNA hydrolase EC=3.1.1.29 Length = 186 Score = 272 bits (696), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 121/185 (65%), Positives = 149/185 (80%) Query: 21 MKWIIGLGNPGPQYAKTKHNVGFMALDELAARHGIVFNQNKCKSVIGEGVIDGVKTVLIK 80 MKWI+GLGNPG Y T+HNVGFM +DELA R I Q+KCK++IGEG + G K VLIK Sbjct: 1 MKWIVGLGNPGTTYQSTRHNVGFMVIDELARRWNIQVTQSKCKALIGEGNVQGTKVVLIK 60 Query: 81 PMTFMNLSGEAVRAYMDYYKVQLEDMIVVYDDLDTELGKIRLRYQGSAGGHNGIKSIIQH 140 PMT+MNLSGE+VR +MDY+K LED ++VYDD+DTE+GK+RLRYQGSAGGHNGIKS+IQH Sbjct: 61 PMTYMNLSGESVRGFMDYFKADLEDGLIVYDDMDTEVGKVRLRYQGSAGGHNGIKSLIQH 120 Query: 141 TGTQSFNRVRMGISRPEPGFAIVDYVLSTFPKKDGDKLEKMIQDTGSALEFSLKHTFEQT 200 GTQ FNR+RMG+SRP+PG I DYVL FPK + + L+ MI+ A+E+SLK +F+ T Sbjct: 121 LGTQQFNRIRMGVSRPQPGRNIADYVLDNFPKSEQEALKSMIEQACDAVEYSLKASFDNT 180 Query: 201 MAKFN 205 MAKFN Sbjct: 181 MAKFN 185 >A9VN64.1 A9VN64_BACWK Peptidyl-tRNA hydrolase EC=3.1.1.29 Length = 207 Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 105/199 (52%), Positives = 137/199 (68%), Gaps = 4/199 (2%) Query: 7 VSAEETSVERIAPLMKWIIGLGNPGPQYAKTKHNVGFMALDELAARHGIVFNQNKCKSVI 66 VS +E+S R MK I+GLGNPG +Y T+HN+GFMA+DELA R I N+ K K V Sbjct: 12 VSKKESSGTR----MKLIVGLGNPGREYELTRHNIGFMAIDELAKRWSISLNEQKFKGVF 67 Query: 67 GEGVIDGVKTVLIKPMTFMNLSGEAVRAYMDYYKVQLEDMIVVYDDLDTELGKIRLRYQG 126 G G ++G K +L+KP+T+MNLSGE++R MDYYK+ +ED IV+YDDLD +GK+RLR +G Sbjct: 68 GAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFIVMYDDLDIPVGKLRLRMKG 127 Query: 127 SAGGHNGIKSIIQHTGTQSFNRVRMGISRPEPGFAIVDYVLSTFPKKDGDKLEKMIQDTG 186 SAGGHNG+KS I H GTQ F R+RMGI RP+ G +VDYVL F ++ + + I++ Sbjct: 128 SAGGHNGVKSTISHLGTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEISGVNQSIENAA 187 Query: 187 SALEFSLKHTFEQTMAKFN 205 A E L F Q M FN Sbjct: 188 DACEEWLNKPFLQIMNTFN 206 >C2SDZ0.1 C2SDZ0_BACCE Peptidyl-tRNA hydrolase Length = 207 Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 105/199 (52%), Positives = 137/199 (68%), Gaps = 4/199 (2%) Query: 7 VSAEETSVERIAPLMKWIIGLGNPGPQYAKTKHNVGFMALDELAARHGIVFNQNKCKSVI 66 VS +E+S R MK I+GLGNPG +Y T+HN+GFMA+DELA R I N+ K K V Sbjct: 12 VSKKESSGTR----MKLIVGLGNPGREYELTRHNIGFMAIDELAKRWSISLNEQKFKGVF 67 Query: 67 GEGVIDGVKTVLIKPMTFMNLSGEAVRAYMDYYKVQLEDMIVVYDDLDTELGKIRLRYQG 126 G G ++G K +L+KP+T+MNLSGE++R MDYYK+ +ED IV+YDDLD +GK+RLR +G Sbjct: 68 GAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFIVMYDDLDIPVGKLRLRMKG 127 Query: 127 SAGGHNGIKSIIQHTGTQSFNRVRMGISRPEPGFAIVDYVLSTFPKKDGDKLEKMIQDTG 186 SAGGHNG+KS I H GTQ F R+RMGI RP+ G +VDYVL F ++ + + I++ Sbjct: 128 SAGGHNGVKSTISHLGTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEISGVNQSIENAA 187 Query: 187 SALEFSLKHTFEQTMAKFN 205 A E L F Q M FN Sbjct: 188 DACEEWLNKPFLQIMNTFN 206 >C2ZZY0.1 C2ZZY0_BACMY Peptidyl-tRNA hydrolase Length = 207 Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 105/199 (52%), Positives = 137/199 (68%), Gaps = 4/199 (2%) Query: 7 VSAEETSVERIAPLMKWIIGLGNPGPQYAKTKHNVGFMALDELAARHGIVFNQNKCKSVI 66 VS +E+S R MK I+GLGNPG +Y T+HN+GFMA+DELA R I N+ K K V Sbjct: 12 VSKKESSGTR----MKLIVGLGNPGREYELTRHNIGFMAIDELAKRWSISLNEQKFKGVF 67 Query: 67 GEGVIDGVKTVLIKPMTFMNLSGEAVRAYMDYYKVQLEDMIVVYDDLDTELGKIRLRYQG 126 G G ++G K +L+KP+T+MNLSGE++R MDYYK+ +ED IV+YDDLD +GK+RLR +G Sbjct: 68 GAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFIVMYDDLDIPVGKLRLRMKG 127 Query: 127 SAGGHNGIKSIIQHTGTQSFNRVRMGISRPEPGFAIVDYVLSTFPKKDGDKLEKMIQDTG 186 SAGGHNG+KS I H GTQ F R+RMGI RP+ G +VDYVL F ++ + + I++ Sbjct: 128 SAGGHNGVKSTISHLGTQEFQRIRMGIDRPKNGIKVVDYVLGRFTSEEISGVNQSIENAA 187 Query: 187 SALEFSLKHTFEQTMAKFN 205 A E L F Q M FN Sbjct: 188 DACEEWLNKPFLQIMNTFN 206 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,250,008,230 Number of extensions: 51295013 Number of successful extensions: 114639 Number of sequences better than 1.0e-05: 1596 Number of HSP's gapped: 112871 Number of HSP's successfully gapped: 1596 Length of query: 206 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 77 Effective length of database: 1,845,385,268 Effective search space: 142094665636 Effective search space used: 142094665636 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)