BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0001.p
         (52 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8Y1.1 B3K8Y1_9BACI Putative uncharacterized protein                 81   3e-14
B1DIH7.1 B1DIH7_9BACL Putative uncharacterized protein                 79   1e-13
C0ZHD8.1 C0ZHD8_BREBN Putative uncharacterized protein yabK            64   5e-09

>B3K8Y1.1 B3K8Y1_9BACI Putative uncharacterized protein
          Length = 76

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 45/51 (88%)

Query: 2  QLGLHSLTPAERRDIIAYDSDGEITVKVTCDYCKEALDNNPELSLLASPLQ 52
          +LG  SLTP ERRDIIAYD +GE+ V+VTCD+C+EAL+ +PELSLLA+PLQ
Sbjct: 26 RLGFDSLTPEERRDIIAYDFNGEVMVRVTCDHCREALEAHPELSLLANPLQ 76


>B1DIH7.1 B1DIH7_9BACL Putative uncharacterized protein
          Length = 76

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 43/51 (84%)

Query: 2  QLGLHSLTPAERRDIIAYDSDGEITVKVTCDYCKEALDNNPELSLLASPLQ 52
          +LG H LTP ER DIIAY+S+G+ITVKV CDYC+EAL+ NPEL L+ +PLQ
Sbjct: 26 RLGFHFLTPEERSDIIAYNSNGDITVKVVCDYCREALEANPELLLVVNPLQ 76


>C0ZHD8.1 C0ZHD8_BREBN Putative uncharacterized protein yabK
          Length = 76

 Score = 63.9 bits (154), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 37/51 (72%)

Query: 2  QLGLHSLTPAERRDIIAYDSDGEITVKVTCDYCKEALDNNPELSLLASPLQ 52
          QLG  SLTP ER  II+ +  G+  V +TCDYC+EAL  +PELSL+ +PLQ
Sbjct: 26 QLGFDSLTPEERALIISREQSGDTVVSITCDYCREALIQHPELSLVGNPLQ 76


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 308,812,851
Number of extensions: 8135984
Number of successful extensions: 20808
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 20812
Number of HSP's successfully gapped: 3
Length of query: 52
Length of database: 3,060,696,203
Length adjustment: 25
Effective length of query: 27
Effective length of database: 2,825,170,828
Effective search space: 76279612356
Effective search space used: 76279612356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)