BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0023.p
         (181 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K3U7.1 B3K3U7_9BACI Heptaprenyl diphosphate synthase component I    103   8e-21
C2HEW9.1 C2HEW9_ENTFC Trans-hexaprenyltranstransferase subunit I       79   2e-13
Q3XX87.1 Q3XX87_ENTFC Heptaprenyl diphosphate synthase component I     78   3e-13
Q927J9.1 Q927J9_LISMO Lmo2640 protein                                  75   2e-12
Q7ANU1.1 Q7ANU1_LISIN Lin2789 protein                                  75   2e-12

>B3K3U7.1 B3K3U7_9BACI Heptaprenyl diphosphate synthase component I
          Length = 181

 Score =  103 bits (256), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 74/139 (53%)

Query: 41  MPGAKLGFANIMILTCIFFLRGRDAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 100
           +PGAKLG  NIM+LTC+  L GRDA                                   
Sbjct: 39  IPGAKLGLGNIMVLTCLVCLGGRDALWLIVLKTLLTAFILGSFSTFLFSMFGALASYLVM 98

Query: 101 XXXXKWGGKKFSVIGISIAGGLAHNTGQLFAAAIVFKSTSIFYYLPVLLITGIVTGIAVG 160
               + GG  FS+ G+SIAGG+AHN GQL AA++V  +  I+YYLP LL  G+VTGI VG
Sbjct: 99  YVMLRLGGSNFSLTGVSIAGGIAHNIGQLTAASLVLGTAKIYYYLPFLLGAGVVTGIFVG 158

Query: 161 YAVRYLVASLSKISLFEEF 179
           +A +YL+ SL +I  F  F
Sbjct: 159 WAAKYLIESLRRIDPFGMF 177


>C2HEW9.1 C2HEW9_ENTFC Trans-hexaprenyltranstransferase subunit I
          Length = 188

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 69/137 (50%)

Query: 42  PGAKLGFANIMILTCIFFLRGRDAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 101
           PGAKLG AN++ +  IF ++ RD+F+                                  
Sbjct: 35  PGAKLGLANLITIVAIFTMKKRDSFLLLWLRLFLTTLLGGTISTFLYSMSGALLSYFGML 94

Query: 102 XXXKWGGKKFSVIGISIAGGLAHNTGQLFAAAIVFKSTSIFYYLPVLLITGIVTGIAVGY 161
              + G K+ S+IGIS AGG  HN GQL  A+ + +S ++  YLPVL + GI++GIA+G 
Sbjct: 95  LVKQLGPKRISIIGISAAGGFMHNVGQLLMASFIAQSWTVMLYLPVLSVLGILSGIAIGI 154

Query: 162 AVRYLVASLSKISLFEE 178
           A  YL+  +  +  F++
Sbjct: 155 AANYLLRHVQTLQRFQK 171


>Q3XX87.1 Q3XX87_ENTFC Heptaprenyl diphosphate synthase component I
          Length = 188

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 69/137 (50%)

Query: 42  PGAKLGFANIMILTCIFFLRGRDAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 101
           PGAKLG AN++ +  IF ++ RD+F+                                  
Sbjct: 35  PGAKLGLANLITIVAIFTMKKRDSFLLLWLRLFLTTLLGGTISTFLYSMSGALLSYFGML 94

Query: 102 XXXKWGGKKFSVIGISIAGGLAHNTGQLFAAAIVFKSTSIFYYLPVLLITGIVTGIAVGY 161
              + G K+ S+IGIS AGG  HN GQL  A+ + +S ++  YLPVL + GI++GIA+G 
Sbjct: 95  LVKQLGPKRVSIIGISAAGGFMHNVGQLLMASFIAQSWTVMLYLPVLSVLGILSGIAIGI 154

Query: 162 AVRYLVASLSKISLFEE 178
           A  YL+  +  +  F++
Sbjct: 155 AANYLLRHVQTLQRFQK 171


>Q927J9.1 Q927J9_LISMO Lmo2640 protein
          Length = 180

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 66/137 (48%)

Query: 42  PGAKLGFANIMILTCIFFLRGRDAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 101
           PGAKLG ANI+    ++ L  +D F+                                  
Sbjct: 35  PGAKLGLANIITCISLYTLSAKDTFMIICIRLVLSTLLGGTISTFMYSAAGAILSFLGMW 94

Query: 102 XXXKWGGKKFSVIGISIAGGLAHNTGQLFAAAIVFKSTSIFYYLPVLLITGIVTGIAVGY 161
              + G K+ S+IG+S+ GG+ HN GQL  A+ +  + S+  YLPVL   GI++GIAVG 
Sbjct: 95  LVQQLGPKRVSIIGVSVTGGILHNVGQLVIASWIAGTWSVMLYLPVLSFIGILSGIAVGI 154

Query: 162 AVRYLVASLSKISLFEE 178
           A  YL+ ++  + +F +
Sbjct: 155 AANYLLKNVQTLRMFAD 171


>Q7ANU1.1 Q7ANU1_LISIN Lin2789 protein
          Length = 180

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 66/137 (48%)

Query: 42  PGAKLGFANIMILTCIFFLRGRDAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 101
           PGAKLG ANI+    ++ L  +D F+                                  
Sbjct: 35  PGAKLGLANIITCISLYTLSAKDTFMIICIRLVLSTLLGGTISTFMYSAAGAILSFLGMW 94

Query: 102 XXXKWGGKKFSVIGISIAGGLAHNTGQLFAAAIVFKSTSIFYYLPVLLITGIVTGIAVGY 161
              + G K+ S+IG+S+ GG+ HN GQL  A+ +  + S+  YLPVL   GI++GIAVG 
Sbjct: 95  LVQQLGPKRVSIIGVSVTGGILHNVGQLVIASWIAGTWSVMLYLPVLSFIGILSGIAVGI 154

Query: 162 AVRYLVASLSKISLFEE 178
           A  YL+ ++  + +F +
Sbjct: 155 AANYLLKNVQTLRMFAD 171


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.328    0.143    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 642,483,926
Number of extensions: 17898444
Number of successful extensions: 76651
Number of sequences better than 1.0e-05: 125
Number of HSP's gapped: 76617
Number of HSP's successfully gapped: 125
Length of query: 181
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 54
Effective length of database: 1,864,227,298
Effective search space: 100668274092
Effective search space used: 100668274092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)