BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0022.p (289 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3U8.1 B3K3U8_9BACI ABC transporter related 254 5e-66 A8U7P4.1 A8U7P4_9LACT ABC transporter, ATP-binding protein 236 2e-60 B1HMV3.1 B1HMV3_LYSSC Cobalt import ATP-binding protein cbiO 1 236 2e-60 C2LTY0.1 C2LTY0_STRSL Cobalt import ATP-binding protein CbiO 2 E... 234 5e-60 B7GJ96.1 B7GJ96_ANOFW ABC-type cobalt transport system, ATPase c... 234 6e-60 >B3K3U8.1 B3K3U8_9BACI ABC transporter related Length = 291 Score = 254 bits (650), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 134/278 (48%), Positives = 193/278 (69%), Gaps = 1/278 (0%) Query: 12 EEAPAVIKLDGVSFGYDPEHPILHNISLSIPQGEWVSIVGPNGCGKSTLVKLMNALLPKS 71 +++ +KL V +G + +L ++SL+IP G+WV I G NG GKSTL++L+N LL S Sbjct: 6 DKSEHAVKLKHVYYGQGCTN-VLKDVSLAIPHGQWVCIAGRNGAGKSTLIRLLNGLLLMS 64 Query: 72 GGEITVCGHQLGEETIGAIRQCIGMVFQNPDNQFIGATVEEDILFGLEGLCLPYAEMEER 131 G I + G +L T+G IR+ IGMVF NPD+QF+G TVE+DI FGLE LCL EM +R Sbjct: 65 RGRILIDGLELNGRTLGDIRRHIGMVFANPDDQFVGLTVEDDIAFGLENLCLSREEMLQR 124 Query: 132 LRAYTVKLGIEALLSKHPGELSGGQKQRVAIASILAMKPGIVIFDEASSMLDEASRDELL 191 +R Y +L I LL +HP LSGGQKQR AIA++LAM+P I++ DEA+SMLDE +++ELL Sbjct: 125 IRTYAERLDIVHLLQRHPATLSGGQKQRAAIAAVLAMEPSIIVMDEAASMLDEKAKNELL 184 Query: 192 RILQGMRAEGQYTILMITHDADEILASDRVLALHGGGLAADTTPRELFRDRGLLEKCHLL 251 +++ M AEG+YT++ ITHD +E+ +DR++ L GG + AD +P+EL LL++C L Sbjct: 185 GLMRAMHAEGRYTLISITHDVEEMAEADRMIVLDGGMVTADGSPKELLLQDDLLQRCRLK 244 Query: 252 EPYPWRLARELQRRGIRVDVPASEKELIDTLWPYNYSK 289 P+ +L REL+ RGI + EKE+++ LW Y+ + Sbjct: 245 APFALQLCRELRARGIDIGELVREKEVLEALWSYHSKR 282 >A8U7P4.1 A8U7P4_9LACT ABC transporter, ATP-binding protein Length = 279 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 120/272 (44%), Positives = 178/272 (65%), Gaps = 7/272 (2%) Query: 17 VIKLDGVSFGY--DPEHPILHNISLSIPQGEWVSIVGPNGCGKSTLVKLMNALLPKSGGE 74 +I L +S+ Y E P L N+SLSI +GEW++I+G NG GKSTL K +N L+ S GE Sbjct: 4 IITLKNISYQYHDTDERPALKNVSLSIEEGEWIAIIGHNGSGKSTLAKTINGLVAPSQGE 63 Query: 75 ITVCGHQLGEETIGAIRQCIGMVFQNPDNQFIGATVEEDILFGLEGLCLPYAEMEERLRA 134 +TV G L EE I IR+ +GMVFQNPDNQF+G+TV++D+ FGLE +P A+M ER+++ Sbjct: 64 VTVGGLILSEENIWNIREMVGMVFQNPDNQFVGSTVQDDVAFGLENQGVPRADMIERVKS 123 Query: 135 YTVKLGIEALLSKHPGELSGGQKQRVAIASILAMKPGIVIFDEASSMLDEASRDELLRIL 194 ++ ++ + K P LSGGQKQRVAIA ++A++P I+I DEA+SMLD R E+L + Sbjct: 124 AITRVKMQDFMEKEPARLSGGQKQRVAIAGVVALRPRIIILDEATSMLDPQGRQEVLATV 183 Query: 195 QGMRAEGQYTILMITHDADEILASDRVLALHGGGLAADTTPRELFRDRGLLEKCHLLEPY 254 + ++ + T++ ITHD DE ++R+L + G L + TP E+F L + L P+ Sbjct: 184 KEIKEKANLTVISITHDIDEAANANRILVMKNGELVQEGTPEEIFSYGDQLVEMGLDLPF 243 Query: 255 PWRLARELQRRGIRVDVPA---SEKELIDTLW 283 +L +L+ RGI VPA +E+ +++ LW Sbjct: 244 AEKLKSDLRDRGIA--VPADYLTEEGMVEWLW 273 >B1HMV3.1 B1HMV3_LYSSC Cobalt import ATP-binding protein cbiO 1 Length = 281 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 120/280 (42%), Positives = 178/280 (63%), Gaps = 5/280 (1%) Query: 15 PAVIKLDGVSFGYDPEHP----ILHNISLSIPQGEWVSIVGPNGCGKSTLVKLMNALLPK 70 P ++ L+ V+F Y PE P + N+S ++ +GEW++IVG NG GKST+ KLMN LL Sbjct: 2 PEILSLNNVTFSYTPEEPNNRNAVENVSFAVEEGEWIAIVGHNGSGKSTIAKLMNGLLFP 61 Query: 71 SGGEITVCGHQLGEETIGAIRQCIGMVFQNPDNQFIGATVEEDILFGLEGLCLPYAEMEE 130 G++ + L EE + R +GMVFQNPDNQF+GATV++D+ F LE +P+ EM Sbjct: 62 QEGDVRILREPLNEENLWESRSLMGMVFQNPDNQFVGATVQDDVAFALENNGVPFEEMVH 121 Query: 131 RLRAYTVKLGIEALLSKHPGELSGGQKQRVAIASILAMKPGIVIFDEASSMLDEASRDEL 190 R+ A ++ + L P LSGGQKQRVAIA LA+KP ++I DEA+SMLD R E+ Sbjct: 122 RVHAALEQVKMSHFLDHEPHHLSGGQKQRVAIAGALALKPKLLILDEATSMLDPQGRGEV 181 Query: 191 LRILQGMRAEGQYTILMITHDADEILASDRVLALHGGGLAADTTPRELFRDRGLLEKCHL 250 L+ +Q +RAE T+L ITHD +E + +DR+L ++ G A+ TP E+F L + L Sbjct: 182 LQTVQTLRAETGLTVLSITHDLEEAMLADRILFMNDGKKFAEGTPAEIFALGDKLVEFGL 241 Query: 251 LEPYPWRLARELQRRGI-RVDVPASEKELIDTLWPYNYSK 289 P+ +L++ LQ+ G+ + +E+EL++ LW N++K Sbjct: 242 DLPFALKLSKLLQKEGVPLMGQHMTEEELVNDLWTSNFNK 281 >C2LTY0.1 C2LTY0_STRSL Cobalt import ATP-binding protein CbiO 2 EC=3.6.3.- Length = 276 Score = 234 bits (598), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 123/270 (45%), Positives = 173/270 (64%), Gaps = 3/270 (1%) Query: 17 VIKLDGVSFGYDPEHP--ILHNISLSIPQGEWVSIVGPNGCGKSTLVKLMNALLPKSGGE 74 +I++ + F Y + P IL ++S + +GEW+SIVG NG GKST +L++ LL G+ Sbjct: 1 MIEIKNLKFKYHQDQPSYILDDVSFHVKRGEWLSIVGHNGSGKSTTARLIDGLLVAESGQ 60 Query: 75 ITVCGHQLGEETIGAIRQCIGMVFQNPDNQFIGATVEEDILFGLEGLCLPYAEMEERLRA 134 I V G +L E+ + IR IGMVFQNPDNQF+GATVE+D+ FGLE +PY EM R++ Sbjct: 61 IIVDGQELTEDNVWDIRDKIGMVFQNPDNQFVGATVEDDVAFGLENKGVPYEEMASRVQE 120 Query: 135 YTVKLGIEALLSKHPGELSGGQKQRVAIASILAMKPGIVIFDEASSMLDEASRDELLRIL 194 +G+ + P LSGGQKQRVAIA I+AM+P I+I DEA+SMLD R EL++ + Sbjct: 121 ALEFVGMSEFKDREPARLSGGQKQRVAIAGIVAMRPSILILDEATSMLDPEGRQELIQSI 180 Query: 195 QGMRAEGQYTILMITHDADEILASDRVLALHGGGLAADTTPRELFRDRGLLEKCHLLEPY 254 + +R E T+L ITHD DE+ SDRVL L G + + ++PRELF L L P+ Sbjct: 181 KAIRKEYGMTVLSITHDLDEVALSDRVLVLKKGKVESVSSPRELFSRGSELVDLGLDIPF 240 Query: 255 PWRLARELQRRG-IRVDVPASEKELIDTLW 283 L ++L+ +G I + +EKEL++ LW Sbjct: 241 SALLTQKLRNKGLIDCEDYLTEKELVEQLW 270 >B7GJ96.1 B7GJ96_ANOFW ABC-type cobalt transport system, ATPase component Length = 284 Score = 234 bits (598), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 117/268 (43%), Positives = 176/268 (65%), Gaps = 2/268 (0%) Query: 18 IKLDGVSFGYDPEHP-ILHNISLSIPQGEWVSIVGPNGCGKSTLVKLMNALLPKSGGEIT 76 ++++ VSF Y E L N+S + +GEWV+IVG NG GKSTL KL+ LLP + G I Sbjct: 5 VRVEHVSFQYANEQTQALQNVSFQVHKGEWVTIVGHNGSGKSTLAKLLIGLLPPTSGTIH 64 Query: 77 VCGHQLGEETIGAIRQCIGMVFQNPDNQFIGATVEEDILFGLEGLCLPYAEMEERLRAYT 136 VCG L +ET+ +R+ +G+VFQNPDNQF+G TV++D+ FGLE +P EME+R++ Sbjct: 65 VCGIPLNDETVWDVRERLGIVFQNPDNQFVGTTVQDDVAFGLENRGVPKHEMEKRIKEAL 124 Query: 137 VKLGIEALLSKHPGELSGGQKQRVAIASILAMKPGIVIFDEASSMLDEASRDELLRILQG 196 K+G+E ++ P LSGGQKQRVAIAS +A++P I+I DEA+SMLD + E+L+++Q Sbjct: 125 QKVGMENFMNDEPHRLSGGQKQRVAIASAIALQPNIIILDEATSMLDPNGKKEVLQVIQS 184 Query: 197 MRAEGQYTILMITHDADEILASDRVLALHGGGLAADTTPRELFRDRGLLEKCHLLEPYPW 256 +R E T++ ITHD +E+ +DRV+ ++ G +A + TP+ +F LE+ L P+ Sbjct: 185 LRCEHDMTVISITHDLNEVAKADRVIVMNKGRIALEGTPKHIFAHGTKLEEMGLELPFSM 244 Query: 257 RLARELQRRGIRVDVPASEKE-LIDTLW 283 +L++ L+ I + E L+ LW Sbjct: 245 QLSQRLKDDRIPITTDHLTIEGLVSELW 272 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,780,713,411 Number of extensions: 74817076 Number of successful extensions: 538972 Number of sequences better than 1.0e-05: 94135 Number of HSP's gapped: 432115 Number of HSP's successfully gapped: 102232 Length of query: 289 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 155 Effective length of database: 1,798,280,193 Effective search space: 278733429915 Effective search space used: 278733429915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)