BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0021.p (299 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9VPA7.1 A9VPA7_BACWK ABC transporter related 283 2e-74 B9IZM4.1 B9IZM4_BACCQ ABC transporter, ATP-binding protein 282 3e-74 B7HQX4.1 B7HQX4_BACC7 ABC transporter, ATP-binding protein 282 3e-74 B5VC30.1 B5VC30_BACCE ABC transporter, ATP-binding protein 282 3e-74 Q73F66.1 CBIO2_BACC1 Cobalt import ATP-binding protein cbiO 2 EC... 280 9e-74 >A9VPA7.1 A9VPA7_BACWK ABC transporter related Length = 293 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 135/282 (47%), Positives = 193/282 (68%) Query: 1 MAIQLQQVSYTYAENSLWKQTALHEITLGIPKGSLTGIAGATGSGKSTLLQLFNGILKPT 60 M I Q+V + Y + +++ AL+++ + P G I G TGSGKST++Q NG+L+PT Sbjct: 1 MEITFQKVEHRYQYKTPFERRALYDVDVSFPSGGYYAIIGHTGSGKSTMIQHLNGLLQPT 60 Query: 61 QGTVQVLDVTIRAGEKSPKLLPLRRRVGLVFQFPEQQMFEDTVEKDLCFGPLNFGMSPEE 120 GTVQ+ + I AG+K KL PLR++VG+VFQFPE Q+FE+TVEKD+CFGP NFG+S EE Sbjct: 61 NGTVQIGEHLISAGKKEKKLKPLRKKVGVVFQFPEHQLFEETVEKDICFGPTNFGVSEEE 120 Query: 121 AKERARQAMLEMGLDLGLLTRNPFRLSGGQMRKAAIASVLAMDPEIVVLDEPTATLDPVS 180 AK++A+ A+ +GLD+ LL R+PF LSGGQMR+ AIA VLAM+PE++VLDEPTA LDP Sbjct: 121 AKQKAKDAIQLVGLDIELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 Query: 181 RAELISQLERLCHEQGRTIIIVTHRMDELLPYADRWILLKDGEIAFQGSGGELAEEPDIL 240 + EL+ L EQG T+I+VTH M++ YAD+ +++ G + QG E+ D L Sbjct: 181 QHELMEMFYNLHKEQGLTVILVTHNMEDAAKYADQIVVMHKGTVFLQGRAEEVFSYADEL 240 Query: 241 ARCGLGVPHSLRYWRGIADRFGLAGEKPRLTPESLAELIASL 282 + G+ +P SL+Y R I ++FG++ K L+ E L + + Sbjct: 241 EQIGVDLPMSLKYKRAIEEKFGISISKATLSLEDLTHEVVQV 282 >B9IZM4.1 B9IZM4_BACCQ ABC transporter, ATP-binding protein Length = 293 Score = 282 bits (721), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 135/282 (47%), Positives = 196/282 (69%) Query: 1 MAIQLQQVSYTYAENSLWKQTALHEITLGIPKGSLTGIAGATGSGKSTLLQLFNGILKPT 60 M I Q+V + Y + +++ AL+++ + P G I G TGSGKST++Q NG+L+PT Sbjct: 1 MEITFQKVEHRYQYKTPFERRALYDVDVSFPSGGYYAIIGHTGSGKSTMIQHLNGLLQPT 60 Query: 61 QGTVQVLDVTIRAGEKSPKLLPLRRRVGLVFQFPEQQMFEDTVEKDLCFGPLNFGMSPEE 120 GTVQ+ + I AG+K KL PLR++VG+VFQFPE Q+FE+TVEKD+CFGP NFG+S EE Sbjct: 61 NGTVQIGEHFISAGKKEKKLKPLRKKVGVVFQFPEHQLFEETVEKDICFGPTNFGVSEEE 120 Query: 121 AKERARQAMLEMGLDLGLLTRNPFRLSGGQMRKAAIASVLAMDPEIVVLDEPTATLDPVS 180 AK++AR+A+ +GL+ LLTR+PF LSGGQMR+ AIA VLAM+PE++VLDEPTA LDP Sbjct: 121 AKQKAREAIELVGLEPELLTRSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 Query: 181 RAELISQLERLCHEQGRTIIIVTHRMDELLPYADRWILLKDGEIAFQGSGGELAEEPDIL 240 + EL+ +L E+G T+I+VTH M++ YA++ +++ G + QGS E+ D L Sbjct: 181 QNELMEMFYKLHKEKGLTVILVTHNMEDAAKYAEQIVVMHKGTVFLQGSAEEVFSHADEL 240 Query: 241 ARCGLGVPHSLRYWRGIADRFGLAGEKPRLTPESLAELIASL 282 + G+ +P SL+Y R I ++FG++ K L+ E L + + Sbjct: 241 EKIGVDLPMSLKYKRAIEEKFGISIPKATLSLEDLTHEVVQV 282 >B7HQX4.1 B7HQX4_BACC7 ABC transporter, ATP-binding protein Length = 293 Score = 282 bits (721), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 135/282 (47%), Positives = 196/282 (69%) Query: 1 MAIQLQQVSYTYAENSLWKQTALHEITLGIPKGSLTGIAGATGSGKSTLLQLFNGILKPT 60 M I Q+V + Y + +++ AL+++ + P G I G TGSGKST++Q NG+L+PT Sbjct: 1 MEITFQKVEHRYQYKTPFERRALYDVDVSFPSGGYYAIIGHTGSGKSTMIQHLNGLLQPT 60 Query: 61 QGTVQVLDVTIRAGEKSPKLLPLRRRVGLVFQFPEQQMFEDTVEKDLCFGPLNFGMSPEE 120 GTVQ+ + I AG+K KL PLR++VG+VFQFPE Q+FE+TVEKD+CFGP NFG+S EE Sbjct: 61 NGTVQIGEHFISAGKKEKKLKPLRKKVGVVFQFPEHQLFEETVEKDICFGPTNFGVSEEE 120 Query: 121 AKERARQAMLEMGLDLGLLTRNPFRLSGGQMRKAAIASVLAMDPEIVVLDEPTATLDPVS 180 AK++AR+A+ +GL+ LLTR+PF LSGGQMR+ AIA VLAM+PE++VLDEPTA LDP Sbjct: 121 AKQKAREAIELVGLEPELLTRSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 Query: 181 RAELISQLERLCHEQGRTIIIVTHRMDELLPYADRWILLKDGEIAFQGSGGELAEEPDIL 240 + EL+ +L E+G T+I+VTH M++ YA++ +++ G + QGS E+ D L Sbjct: 181 QNELMEMFYKLHKEKGLTVILVTHNMEDAAKYAEQIVVMHKGTVFLQGSAEEVFSHADEL 240 Query: 241 ARCGLGVPHSLRYWRGIADRFGLAGEKPRLTPESLAELIASL 282 + G+ +P SL+Y R I ++FG++ K L+ E L + + Sbjct: 241 EKIGVDLPMSLKYKRAIEEKFGISIPKATLSLEDLTHEVVQV 282 >B5VC30.1 B5VC30_BACCE ABC transporter, ATP-binding protein Length = 293 Score = 282 bits (721), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 135/282 (47%), Positives = 196/282 (69%) Query: 1 MAIQLQQVSYTYAENSLWKQTALHEITLGIPKGSLTGIAGATGSGKSTLLQLFNGILKPT 60 M I Q+V + Y + +++ AL+++ + P G I G TGSGKST++Q NG+L+PT Sbjct: 1 MEITFQKVEHRYQYKTPFERRALYDVDVSFPSGGYYAIIGHTGSGKSTMIQHLNGLLQPT 60 Query: 61 QGTVQVLDVTIRAGEKSPKLLPLRRRVGLVFQFPEQQMFEDTVEKDLCFGPLNFGMSPEE 120 GTVQ+ + I AG+K KL PLR++VG+VFQFPE Q+FE+TVEKD+CFGP NFG+S EE Sbjct: 61 NGTVQIGEHFISAGKKEKKLKPLRKKVGVVFQFPEHQLFEETVEKDICFGPTNFGVSEEE 120 Query: 121 AKERARQAMLEMGLDLGLLTRNPFRLSGGQMRKAAIASVLAMDPEIVVLDEPTATLDPVS 180 AK++AR+A+ +GL+ LLTR+PF LSGGQMR+ AIA VLAM+PE++VLDEPTA LDP Sbjct: 121 AKQKAREAIELVGLEPELLTRSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 Query: 181 RAELISQLERLCHEQGRTIIIVTHRMDELLPYADRWILLKDGEIAFQGSGGELAEEPDIL 240 + EL+ +L E+G T+I+VTH M++ YA++ +++ G + QGS E+ D L Sbjct: 181 QNELMEMFYKLHKEKGLTVILVTHNMEDAAKYAEQIVVMHKGTVFLQGSAEEVFSHADEL 240 Query: 241 ARCGLGVPHSLRYWRGIADRFGLAGEKPRLTPESLAELIASL 282 + G+ +P SL+Y R I ++FG++ K L+ E L + + Sbjct: 241 EKIGVDLPMSLKYKRAIEEKFGISIPKATLSLEDLTHEVVQV 282 >Q73F66.1 CBIO2_BACC1 Cobalt import ATP-binding protein cbiO 2 EC=3.6.3.- Length = 293 Score = 280 bits (717), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 134/282 (47%), Positives = 195/282 (69%) Query: 1 MAIQLQQVSYTYAENSLWKQTALHEITLGIPKGSLTGIAGATGSGKSTLLQLFNGILKPT 60 M I Q+V + Y + +++ AL+++ + P G I G TGSGKST++Q NG+L+PT Sbjct: 1 MEITFQKVEHRYQHKTPFERRALYDVDVSFPSGGYYAIIGHTGSGKSTMIQHLNGLLQPT 60 Query: 61 QGTVQVLDVTIRAGEKSPKLLPLRRRVGLVFQFPEQQMFEDTVEKDLCFGPLNFGMSPEE 120 GTVQ+ + I AG+K KL PLR++VG+VFQFPE Q+FE+TVEKD+CFGP NFG+S EE Sbjct: 61 NGTVQIGEHFISAGKKEKKLKPLRKKVGVVFQFPEHQLFEETVEKDICFGPTNFGVSVEE 120 Query: 121 AKERARQAMLEMGLDLGLLTRNPFRLSGGQMRKAAIASVLAMDPEIVVLDEPTATLDPVS 180 AK++AR+A+ +GL+ LL R+PF LSGGQMR+ AIA VLAM+PE++VLDEPTA LDP Sbjct: 121 AKQKAREAIELVGLEPELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 Query: 181 RAELISQLERLCHEQGRTIIIVTHRMDELLPYADRWILLKDGEIAFQGSGGELAEEPDIL 240 + EL+ +L E+G T+I+VTH M++ YA++ +++ G + QGS E+ D L Sbjct: 181 QNELMEMFYKLHKEKGLTVILVTHNMEDAAKYAEQIVVMHKGTVFLQGSAEEVFSHADEL 240 Query: 241 ARCGLGVPHSLRYWRGIADRFGLAGEKPRLTPESLAELIASL 282 + G+ +P SL+Y R I ++FG++ K L+ E L + + Sbjct: 241 EKIGVDLPMSLKYKRAIEEKFGISIPKATLSLEDLTHEVVQV 282 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,682,315,630 Number of extensions: 71014081 Number of successful extensions: 514597 Number of sequences better than 1.0e-05: 91749 Number of HSP's gapped: 403827 Number of HSP's successfully gapped: 99204 Length of query: 299 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 164 Effective length of database: 1,788,859,178 Effective search space: 293372905192 Effective search space used: 293372905192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)