BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0020.p (263 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3V0.1 B3K3V0_9BACI Cobalt transport protein 212 3e-53 A6CUA0.1 A6CUA0_9BACI YbaF 198 3e-49 A9VPA8.1 A9VPA8_BACWK Cobalt transport protein 194 7e-48 Q73F65.1 Q73F65_BACC1 Cobalt transport protein 193 1e-47 B9IZM5.1 B9IZM5_BACCQ ABC transporter, permease; possible cobalt... 193 1e-47 >B3K3V0.1 B3K3V0_9BACI Cobalt transport protein Length = 263 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 109/250 (43%), Positives = 153/250 (61%) Query: 1 MNERLLLGRSIETGSWVHKLDARSKLTGMLLYVAVILLSDSWQSMALLAVFSIAVMASTR 60 M +++LGR +E SWVH+LD R+K M L++ + L D + + L +F+ V+ +TR Sbjct: 1 MKRKIILGRYMEGDSWVHRLDPRAKTAAMPLFMVAVFLVDGYMGVLALLLFTAVVIRTTR 60 Query: 61 IPLKYFIKAAKPLRYLMLFIFIVQLLSVKAGDVLWSAGSFSLHEGGLRLASFSVIRMXXX 120 IP +Y+I+A KPL +L+LFI + +L G L G+F ++ GGL S RM Sbjct: 61 IPYRYYIRAMKPLMFLLLFILVFHILYDAGGGKLLDVGAFKVYAGGLEKGIVSASRMGLF 120 Query: 121 XXXXXXXXXXXXPGKLNQGLEGILSPFKKFGLSPDRITLMISIALRFIPTILDESQIIMK 180 P +L QGL +L P G+ DR+ LM+ IALRFIPTI +E++ + K Sbjct: 121 IMLAAVLTFTTQPEQLAQGLGSLLRPLTWIGVPTDRLVLMLGIALRFIPTIFEEAERLWK 180 Query: 181 AQASRGADLQELPLKEKARMLVSLLVPVISSAFRRAQDLVYSMEARGFRMDAPRSRYHRL 240 AQ SRG DL PL+EKAR++++LLVPV + AFRRA L SMEARG+R+ A RSR+ Sbjct: 181 AQHSRGLDLSSHPLREKARLIIALLVPVTTGAFRRAIGLADSMEARGYRLGARRSRFRLF 240 Query: 241 RWGAADTVFV 250 W ADT+FV Sbjct: 241 VWKRADTLFV 250 >A6CUA0.1 A6CUA0_9BACI YbaF Length = 265 Score = 198 bits (504), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 97/263 (36%), Positives = 160/263 (60%) Query: 1 MNERLLLGRSIETGSWVHKLDARSKLTGMLLYVAVILLSDSWQSMALLAVFSIAVMASTR 60 M ++++ GR I + S+VH++D RSKL + ++ + L+++ + A+L +F++ M S + Sbjct: 1 MMDKMIFGRYIPSDSFVHRMDPRSKLIFVFAFICTVFLANNAVTYAVLGIFTLTAMLSVK 60 Query: 61 IPLKYFIKAAKPLRYLMLFIFIVQLLSVKAGDVLWSAGSFSLHEGGLRLASFSVIRMXXX 120 +PLK+ I KP+ +L+LF F++ + K G+VL G F ++E GLR A F +R Sbjct: 61 VPLKFLIGGLKPVIWLVLFTFLLHIFFTKEGEVLADLGFFKIYEEGLRQAVFISLRFTYL 120 Query: 121 XXXXXXXXXXXXPGKLNQGLEGILSPFKKFGLSPDRITLMISIALRFIPTILDESQIIMK 180 P + GLE +L P KK + LM+SI+LRFIPT+++E+ I+K Sbjct: 121 IIVTTLLTLTTSPISITDGLETLLDPLKKVKFPVHEMALMMSISLRFIPTLMEETDKIIK 180 Query: 181 AQASRGADLQELPLKEKARMLVSLLVPVISSAFRRAQDLVYSMEARGFRMDAPRSRYHRL 240 AQ +RGA+L P+KE+ + +V LL+P+ SAF+RA+DL +MEARG++ R++Y L Sbjct: 181 AQTARGAELATGPIKERIKSIVPLLIPLFVSAFKRAEDLATAMEARGYKGGEGRTKYRVL 240 Query: 241 RWGAADTVFVAMFVIMGVAVALL 263 RW DT+ + VI+ + +L Sbjct: 241 RWTGTDTLVLGSLVILAAVLIVL 263 >A9VPA8.1 A9VPA8_BACWK Cobalt transport protein Length = 264 Score = 194 bits (493), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 95/259 (36%), Positives = 159/259 (61%) Query: 3 ERLLLGRSIETGSWVHKLDARSKLTGMLLYVAVILLSDSWQSMALLAVFSIAVMASTRIP 62 ++L++GR I S +H+LD R+KL + LYV V+ L+++ S L ++++ + ++P Sbjct: 2 QQLIIGRYIPGQSLIHQLDPRTKLLIVFLYVFVVFLANNAISYGFLFLYALIALFFAKVP 61 Query: 63 LKYFIKAAKPLRYLMLFIFIVQLLSVKAGDVLWSAGSFSLHEGGLRLASFSVIRMXXXXX 122 ++Y + KP+ ++ LF F + + + K G+VL+ G FS+HE GL + IR Sbjct: 62 IRYVLSGLKPILWIFLFTFFLHIFTNKEGEVLFQLGWFSIHEKGLEQGIYISIRFFVIIL 121 Query: 123 XXXXXXXXXXPGKLNQGLEGILSPFKKFGLSPDRITLMISIALRFIPTILDESQIIMKAQ 182 P ++ GLE +L PFK+ + I LM+SI+LRFIPT++DE+ IMKAQ Sbjct: 122 MTTLLTLTTTPIEITDGLETLLKPFKRIKVPVHEIALMMSISLRFIPTLMDETSKIMKAQ 181 Query: 183 ASRGADLQELPLKEKARMLVSLLVPVISSAFRRAQDLVYSMEARGFRMDAPRSRYHRLRW 242 ASRG D P+K++ + ++SLLVP+ SAF+RA+DL +ME+RG++ R+++ +LRW Sbjct: 182 ASRGIDFAGGPIKDRMKAIISLLVPLFISAFKRAEDLAIAMESRGYKSGEGRTKFRQLRW 241 Query: 243 GAADTVFVAMFVIMGVAVA 261 +DTV + + + +A Sbjct: 242 KISDTVTIVSLLCLACILA 260 >Q73F65.1 Q73F65_BACC1 Cobalt transport protein Length = 264 Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 95/259 (36%), Positives = 159/259 (61%) Query: 3 ERLLLGRSIETGSWVHKLDARSKLTGMLLYVAVILLSDSWQSMALLAVFSIAVMASTRIP 62 ++L++GR I S +H+LD R+KL + LYV V+ L+++ S L ++++ + ++P Sbjct: 2 QQLIIGRYIPGNSLIHQLDPRTKLLIVFLYVFVVFLANNAISYGFLFLYALIALFFAKVP 61 Query: 63 LKYFIKAAKPLRYLMLFIFIVQLLSVKAGDVLWSAGSFSLHEGGLRLASFSVIRMXXXXX 122 ++Y + KP+ ++ LF F + +L+ K G+VL+ G FS+HE GL + IR Sbjct: 62 IRYVLSGLKPILWIFLFTFFLHILTNKEGEVLFQLGWFSIHEKGLEQGIYISIRFFVIIL 121 Query: 123 XXXXXXXXXXPGKLNQGLEGILSPFKKFGLSPDRITLMISIALRFIPTILDESQIIMKAQ 182 P ++ GLE +L P K+ + I LM+SI+LRFIPT++DE+ IMKAQ Sbjct: 122 MTTLLTLTTTPIEITDGLETLLKPLKRIKVPVHEIALMMSISLRFIPTLMDETSKIMKAQ 181 Query: 183 ASRGADLQELPLKEKARMLVSLLVPVISSAFRRAQDLVYSMEARGFRMDAPRSRYHRLRW 242 +SRG D P+K++ + ++SLLVP+ SAF+RA+DL +MEARG++ R+++ +LRW Sbjct: 182 SSRGIDFAGGPIKDRMKAIISLLVPLFISAFKRAEDLAIAMEARGYQSGEGRTKFRQLRW 241 Query: 243 GAADTVFVAMFVIMGVAVA 261 +DTV + + + +A Sbjct: 242 KTSDTVTIISLLCLACILA 260 >B9IZM5.1 B9IZM5_BACCQ ABC transporter, permease; possible cobalt transport protein Length = 264 Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 95/259 (36%), Positives = 159/259 (61%) Query: 3 ERLLLGRSIETGSWVHKLDARSKLTGMLLYVAVILLSDSWQSMALLAVFSIAVMASTRIP 62 ++L++GR I S +H+LD R+KL + LYV V+ L+++ S L ++++ + ++P Sbjct: 2 QQLIIGRYIPGNSLIHQLDPRTKLLIVFLYVFVVFLANNAISYGFLFLYALIALFFAKVP 61 Query: 63 LKYFIKAAKPLRYLMLFIFIVQLLSVKAGDVLWSAGSFSLHEGGLRLASFSVIRMXXXXX 122 ++Y + KP+ ++ LF F + +L+ K G+VL+ G FS+HE GL + IR Sbjct: 62 IRYVLSGLKPILWIFLFTFFLHILTNKEGEVLFQLGWFSIHEKGLEQGIYISIRFFVIIL 121 Query: 123 XXXXXXXXXXPGKLNQGLEGILSPFKKFGLSPDRITLMISIALRFIPTILDESQIIMKAQ 182 P ++ GLE +L P K+ + I LM+SI+LRFIPT++DE+ IMKAQ Sbjct: 122 MTTLLTLTTTPIEITDGLETLLKPLKRIKVPVHEIALMMSISLRFIPTLMDETSKIMKAQ 181 Query: 183 ASRGADLQELPLKEKARMLVSLLVPVISSAFRRAQDLVYSMEARGFRMDAPRSRYHRLRW 242 +SRG D P+K++ + ++SLLVP+ SAF+RA+DL +MEARG++ R+++ +LRW Sbjct: 182 SSRGIDFAGGPIKDRMKAIISLLVPLFISAFKRAEDLAIAMEARGYQSGEGRTKFRQLRW 241 Query: 243 GAADTVFVAMFVIMGVAVA 261 +DTV + + + +A Sbjct: 242 KTSDTVTIISLLCLACILA 260 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.139 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,244,066,527 Number of extensions: 40911706 Number of successful extensions: 130218 Number of sequences better than 1.0e-05: 684 Number of HSP's gapped: 130012 Number of HSP's successfully gapped: 684 Length of query: 263 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 130 Effective length of database: 1,807,701,208 Effective search space: 235001157040 Effective search space used: 235001157040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)