BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0016.p (326 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3V3.1 B3K3V3_9BACI Polyprenyl synthetase 297 9e-79 Q5KXU1.1 Q5KXU1_GEOKA Heptaprenyl diphosphate synthasecomponent ... 219 3e-55 A4IQ92.1 A4IQ92_GEOTN Component II of heptaprenyl diphosphate sy... 219 3e-55 B4BKZ7.1 B4BKZ7_9BACI Heptaprenyl diphosphate synthase component II 219 3e-55 P55785.1 HEPS2_BACST Heptaprenyl diphosphate synthase component ... 218 5e-55 >B3K3V3.1 B3K3V3_9BACI Polyprenyl synthetase Length = 334 Score = 297 bits (760), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 148/333 (44%), Positives = 224/333 (67%), Gaps = 13/333 (3%) Query: 1 MKLHEALNIDLDEINHEIQNIVARDKDVPKKSLLAQSILELTSSGGKRLRPLMVIVGSRF 60 M LH + +DL + ++ +V+ D+D+P S++ S+++L ++GGKRLRPLMV++GSRF Sbjct: 1 MNLHNRIGVDLASFDRLLREVVSSDRDLPPSSVVLSSVMDLINAGGKRLRPLMVVLGSRF 60 Query: 61 GRKPSTRRTLQLSAAAEFIHAASLIHDDIIDDAELRRGVPALHTKTGVLSAVHIGNYMSA 120 G ++ + E++H ASL+HDDIID +++RRG+P LH T V +AVHIGNYM A Sbjct: 61 GESGHEPAVMKTAVLLEYLHMASLVHDDIIDQSDMRRGMPTLHETTDVQTAVHIGNYMIA 120 Query: 121 RVIELLSKYTG------------DKNRYVHDLSSVATAQLCLGEYQQMEHAYDYNLTFDE 168 R IE + + G D+ + +L+++ T +LC+GEY Q++H +D+ LT ++ Sbjct: 121 RAIEWAAGHPGGDPDGNSEDVSEDEAYRLAELAALVT-ELCMGEYDQLQHRFDFGLTMEQ 179 Query: 169 YLEKSRNKTAMLMATCLRVGALSAESPEEVAGLLYDFGEALGMSFQIQDDLLDFTQSADV 228 YLEK+R KTA+LMA CL+ GA +A + A L+ FGE+LGM+FQI+DDLLDFT+ + Sbjct: 180 YLEKTRCKTALLMAHCLKAGAEAAHADAGTAERLFQFGESLGMAFQIRDDLLDFTKPREA 239 Query: 229 LGKPAGSDLRNGQVTLPVLFALQDPELAPVIRTIGPASLEEEVAHVLALINRSDALFRTE 288 +GKPAG+DL+NG +TLPVL+AL DP LAP IR +GP S ++ V+ I + A+ ++E Sbjct: 240 IGKPAGADLQNGNITLPVLYALNDPALAPRIRQLGPHSAAADMDDVIHRIAATGAIEQSE 299 Query: 289 EVSQDYLGQAAAIIQRLSSYPAHADLETLLQYF 321 E+++ Y A +I + +PA DL+ LL YF Sbjct: 300 ELARSYAEHAQRMIGDFADHPAQRDLQALLHYF 332 >Q5KXU1.1 Q5KXU1_GEOKA Heptaprenyl diphosphate synthasecomponent II (Spore germination protein C3) Length = 320 Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 125/323 (38%), Positives = 192/323 (59%), Gaps = 9/323 (2%) Query: 3 LHEALNIDLDEINHEIQNIVARDKDVPKKSLLAQSILELTSSGGKRLRPLMVIVGSRFGR 62 ++ LN DL + E++ V R + P L ++ L L +GGKR+RP+ V++ +RFG Sbjct: 6 MYSFLNDDLAAVEEELERTV-RSEYGP----LGEAALHLLQAGGKRIRPVFVLLSARFGH 60 Query: 63 KPSTRRTLQLSAAAEFIHAASLIHDDIIDDAELRRGVPALHTKTGVLSAVHIGNYMSARV 122 R ++ A E IH ASL+HDD+IDDA++RRG P + + A++ G+Y+ AR Sbjct: 61 Y-DFERIKHVAVALELIHMASLVHDDVIDDADVRRGRPTIKARWSNRFAMYTGDYLFARS 119 Query: 123 IELLSKYTGDKNRYVHDLSSVATAQLCLGEYQQMEHAYDYNLTFDEYLEKSRNKTAMLMA 182 +E +++ + H + + ++C GE +Q++ Y ++ YL + R KTA+L+A Sbjct: 120 LERMAELDSPR---AHQVLAKTIVEVCHGEIEQIKDKYRFDQPLRTYLRRIRRKTALLIA 176 Query: 183 TCLRVGALSAESPEEVAGLLYDFGEALGMSFQIQDDLLDFTQSADVLGKPAGSDLRNGQV 242 ++GAL+A +PE VA LY FG +GMSFQI DD+LDFT + + LGKPAGSDL+ G V Sbjct: 177 ASCQLGALAAGAPEAVANQLYWFGHCVGMSFQITDDILDFTGTEEQLGKPAGSDLQQGNV 236 Query: 243 TLPVLFALQDPELAPVIRTIGPASLEEEVAHVLALINRSDALFRTEEVSQDYLGQAAAII 302 TLPVL+AL D ++ I + + EE+A VLA I ++DA+ R+ +S YL +A ++ Sbjct: 237 TLPVLYALCDEQVRAKITAVNADTDAEEMAAVLAAIKQTDAIERSYALSDRYLEKALRLL 296 Query: 303 QRLSSYPAHADLETLLQYFAGRD 325 L + A L L Y RD Sbjct: 297 GELPANEARTLLHDLALYIGKRD 319 >A4IQ92.1 A4IQ92_GEOTN Component II of heptaprenyl diphosphate synthase Length = 320 Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 122/323 (37%), Positives = 189/323 (58%), Gaps = 9/323 (2%) Query: 3 LHEALNIDLDEINHEIQNIVARDKDVPKKSLLAQSILELTSSGGKRLRPLMVIVGSRFGR 62 ++ L+ DL + E++ V + L ++ L L +GGKR+RP+ V++ +RFG Sbjct: 6 MYSFLSKDLAAVEQELERTVQSEY-----GPLGEAALHLLQAGGKRIRPVFVLLAARFGH 60 Query: 63 KPSTRRTLQLSAAAEFIHAASLIHDDIIDDAELRRGVPALHTKTGVLSAVHIGNYMSARV 122 R ++ A E IH ASL+HDD+IDDA+LRRG P + K A++ G+Y+ AR Sbjct: 61 Y-DLERIKHVAVALELIHMASLVHDDVIDDADLRRGRPTIKAKWSNRFAMYTGDYLFARS 119 Query: 123 IELLSKYTGDKNRYVHDLSSVATAQLCLGEYQQMEHAYDYNLTFDEYLEKSRNKTAMLMA 182 +E +++ + H + + ++C GE +Q++ Y + YL + R KTA+L+A Sbjct: 120 LERMAELDDPR---AHQVLAKTIVEVCRGEIEQIKDKYWFEQPLRTYLRRIRRKTALLIA 176 Query: 183 TCLRVGALSAESPEEVAGLLYDFGEALGMSFQIQDDLLDFTQSADVLGKPAGSDLRNGQV 242 ++GAL+A +PE VA LY FG +GMSFQI DD+LDFT + + LGKPAGSDL G + Sbjct: 177 ASCQLGALAAGAPESVAKRLYWFGHYVGMSFQITDDILDFTGTEEQLGKPAGSDLLQGNI 236 Query: 243 TLPVLFALQDPELAPVIRTIGPASLEEEVAHVLALINRSDALFRTEEVSQDYLGQAAAII 302 TLPVL+AL+D L I + P + +E+A V++ I R+DA+ ++ +S YL +A ++ Sbjct: 237 TLPVLYALRDERLKAAITAVSPETNADEMAAVISAIKRTDAIDQSYALSDRYLEKALRLL 296 Query: 303 QRLSSYPAHADLETLLQYFAGRD 325 L + A L L Y RD Sbjct: 297 GELPANKARTLLHDLALYIGKRD 319 >B4BKZ7.1 B4BKZ7_9BACI Heptaprenyl diphosphate synthase component II Length = 320 Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 122/323 (37%), Positives = 189/323 (58%), Gaps = 9/323 (2%) Query: 3 LHEALNIDLDEINHEIQNIVARDKDVPKKSLLAQSILELTSSGGKRLRPLMVIVGSRFGR 62 ++ L+ DL + E++ V + L ++ L L +GGKR+RP+ V++ +RFG Sbjct: 6 MYSFLSKDLAAVEQELERTVQSEY-----GPLGEAALHLLQAGGKRIRPVFVLLAARFGH 60 Query: 63 KPSTRRTLQLSAAAEFIHAASLIHDDIIDDAELRRGVPALHTKTGVLSAVHIGNYMSARV 122 R ++ A E IH ASL+HDD+IDDA+LRRG P + K A++ G+Y+ AR Sbjct: 61 Y-DLERIKHVAVALELIHMASLVHDDVIDDADLRRGRPTIKAKWSNRFAMYTGDYLFARS 119 Query: 123 IELLSKYTGDKNRYVHDLSSVATAQLCLGEYQQMEHAYDYNLTFDEYLEKSRNKTAMLMA 182 +E +++ + H + + ++C GE +Q++ Y + YL + R KTA+L+A Sbjct: 120 LERMAELDDPR---AHQVLAKTIVEVCRGEIEQIKDKYWFEQPLRTYLRRIRRKTALLIA 176 Query: 183 TCLRVGALSAESPEEVAGLLYDFGEALGMSFQIQDDLLDFTQSADVLGKPAGSDLRNGQV 242 ++GAL+A +PE VA LY FG +GMSFQI DD+LDFT + + LGKPAGSDL G + Sbjct: 177 ASCQLGALAAGAPESVAKRLYWFGHYVGMSFQITDDILDFTGTEEQLGKPAGSDLLQGNI 236 Query: 243 TLPVLFALQDPELAPVIRTIGPASLEEEVAHVLALINRSDALFRTEEVSQDYLGQAAAII 302 TLPVL+AL+D L I + P + +E+A V++ I R+DA+ ++ +S YL +A ++ Sbjct: 237 TLPVLYALRDERLKAAITAVSPETNADEMAAVISAIKRTDAIDQSYALSDRYLEKALRLL 296 Query: 303 QRLSSYPAHADLETLLQYFAGRD 325 L + A L L Y RD Sbjct: 297 GELPANKARTLLHDLALYIGKRD 319 >P55785.1 HEPS2_BACST Heptaprenyl diphosphate synthase component 2 EC=2.5.1.30 Length = 320 Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 123/323 (38%), Positives = 188/323 (58%), Gaps = 9/323 (2%) Query: 3 LHEALNIDLDEINHEIQNIVARDKDVPKKSLLAQSILELTSSGGKRLRPLMVIVGSRFGR 62 ++ L+ DL + E++ V + L ++ L L +GGKR+RP+ V++ +RFG+ Sbjct: 6 MYSFLSDDLAAVEEELERAVQSEY-----GPLGEAALHLLQAGGKRIRPVFVLLAARFGQ 60 Query: 63 KPSTRRTLQLSAAAEFIHAASLIHDDIIDDAELRRGVPALHTKTGVLSAVHIGNYMSARV 122 R ++ A E IH ASL+HDD+IDDA+LRRG P + K A++ G+Y+ AR Sbjct: 61 Y-DLERMKHVAVALELIHMASLVHDDVIDDADLRRGRPTIKAKWSNRFAMYTGDYLFARS 119 Query: 123 IELLSKYTGDKNRYVHDLSSVATAQLCLGEYQQMEHAYDYNLTFDEYLEKSRNKTAMLMA 182 +E +++ N H + + ++C GE +Q++ Y ++ YL + R KTA+L+A Sbjct: 120 LERMAELG---NPRAHQVLAKTIVEVCRGEIEQIKDKYRFDQPLRTYLRRIRRKTALLIA 176 Query: 183 TCLRVGALSAESPEEVAGLLYDFGEALGMSFQIQDDLLDFTQSADVLGKPAGSDLRNGQV 242 ++GAL+A +PE + LY FG +GMSFQI DD+LDFT + + LGKPAGSDL G V Sbjct: 177 ASCQLGALAAGAPEPIVKRLYWFGHYVGMSFQITDDILDFTGTEEQLGKPAGSDLLQGNV 236 Query: 243 TLPVLFALQDPELAPVIRTIGPASLEEEVAHVLALINRSDALFRTEEVSQDYLGQAAAII 302 TLPVL+AL D + I +GP + E+A V++ I R+DA+ R+ +S YL +A ++ Sbjct: 237 TLPVLYALSDERVKAAIAAVGPETDVAEMAAVISAIKRTDAIERSYALSDRYLDKALHLL 296 Query: 303 QRLSSYPAHADLETLLQYFAGRD 325 L A L L Y RD Sbjct: 297 DGLPMNEARGLLRDLALYIGKRD 319 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,790,422,412 Number of extensions: 71345172 Number of successful extensions: 209202 Number of sequences better than 1.0e-05: 3615 Number of HSP's gapped: 201801 Number of HSP's successfully gapped: 3628 Length of query: 326 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 190 Effective length of database: 1,779,438,163 Effective search space: 338093250970 Effective search space used: 338093250970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)