BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0015.p
         (227 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K3V4.1 B3K3V4_9BACI Putative uncharacterized protein                 54   8e-06

>B3K3V4.1 B3K3V4_9BACI Putative uncharacterized protein
          Length = 145

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 2/118 (1%)

Query: 79  VNRKLMEDSFRLLQAEMSPIAGIQ-LHLSPAECEQLFSVLERHDLEYDRKVHLLGIYIIL 137
           ++ KL++D+  LL++ +     I  + +       +  +L  ++L Y RK+ +L   I++
Sbjct: 1   MDMKLLQDTIDLLRSHIDSGTDIDWMEMDNRPVRDIADMLNAYELAYSRKMTVLACCILI 60

Query: 138 TVAAERHMEC-APHHPDLTRNILDGDYLYSFYLQFAVKCRELDLVAYLAPSIKKMQIA 194
             A  +H +  A  +  LTR +LDGDYL     + AVK +E  L++ L P  K+MQ++
Sbjct: 61  HTALNKHGKLQAKDNERLTRLLLDGDYLTGLMYRIAVKRKEWKLLSRLLPFHKRMQLS 118


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.326    0.141    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,235,077,368
Number of extensions: 47424479
Number of successful extensions: 111555
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 111556
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 3,060,696,203
Length adjustment: 131
Effective length of query: 96
Effective length of database: 1,826,543,238
Effective search space: 175348150848
Effective search space used: 175348150848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)