BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0011.p
         (67 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K4R4.1 B3K4R4_9BACI CsbD family protein                             108   1e-22
B9T8D1.1 B9T8D1_RICCO Putative uncharacterized protein                 82   2e-14
B6F6I4.1 B6F6I4_9ENTR Putative uncharacterized protein                 80   4e-14
A2SJX4.1 A2SJX4_METPP Putative uncharacterized protein                 79   9e-14
B5XXY6.1 B5XXY6_KLEP3 CsbD family protein                              79   9e-14

>B3K4R4.1 B3K4R4_9BACI CsbD family protein
          Length = 67

 Score =  108 bits (271), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/66 (80%), Positives = 57/66 (86%)

Query: 1  MDSNVIKGKWMQLKGEAKKQWGQLTDDDLDVIDGEKDKLIGKLQERYGHTKDDAEAEYRN 60
          MDSNV KGKW Q+KGEAKKQWG+LTDDDLDVIDGEKDKL+GKLQERYGHTKD AE EY +
Sbjct: 1  MDSNVFKGKWKQMKGEAKKQWGKLTDDDLDVIDGEKDKLVGKLQERYGHTKDAAEREYTD 60

Query: 61 WEQSIR 66
          W    R
Sbjct: 61 WSARYR 66


>B9T8D1.1 B9T8D1_RICCO Putative uncharacterized protein
          Length = 67

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 54/67 (80%)

Query: 1  MDSNVIKGKWMQLKGEAKKQWGQLTDDDLDVIDGEKDKLIGKLQERYGHTKDDAEAEYRN 60
          M+ ++ +G W QLKG+ ++QWG+LT+DDLDVI+G++D++ GK+QERYG TKD+AE + R 
Sbjct: 1  MNKDIFEGNWKQLKGKVQEQWGKLTNDDLDVIEGKRDQVAGKIQERYGITKDEAEKQIRT 60

Query: 61 WEQSIRH 67
          WE   +H
Sbjct: 61 WENKHKH 67


>B6F6I4.1 B6F6I4_9ENTR Putative uncharacterized protein
          Length = 110

 Score = 80.5 bits (197), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 51/62 (82%)

Query: 1   MDSNVIKGKWMQLKGEAKKQWGQLTDDDLDVIDGEKDKLIGKLQERYGHTKDDAEAEYRN 60
           M+ + I G W Q KG+AK+QWG+LTDDD+ VI+G++D+L+GK+QERYG+ KD AE E ++
Sbjct: 42  MNKDEIGGNWKQFKGKAKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYEKDQAETEVKD 101

Query: 61  WE 62
           WE
Sbjct: 102 WE 103


>A2SJX4.1 A2SJX4_METPP Putative uncharacterized protein
          Length = 79

 Score = 79.3 bits (194), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 52/66 (78%)

Query: 1  MDSNVIKGKWMQLKGEAKKQWGQLTDDDLDVIDGEKDKLIGKLQERYGHTKDDAEAEYRN 60
          M+ + I+G W QLKG+AK+QWG+LTDDD DVI G +D+L GK+QERYG  KD+AE +  +
Sbjct: 1  MNWDRIEGNWKQLKGKAKEQWGKLTDDDFDVIAGRRDQLAGKIQERYGVAKDEAEKQVSS 60

Query: 61 WEQSIR 66
          WE+S +
Sbjct: 61 WERSAK 66


>B5XXY6.1 B5XXY6_KLEP3 CsbD family protein
          Length = 69

 Score = 79.3 bits (194), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 51/62 (82%)

Query: 1  MDSNVIKGKWMQLKGEAKKQWGQLTDDDLDVIDGEKDKLIGKLQERYGHTKDDAEAEYRN 60
          M+ + I G W QLKG+AK+QWG+LTDDD+ VI+G++D+L+GK+QERYG+ KD AE E  +
Sbjct: 1  MNKDEIGGNWKQLKGKAKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYAKDQAEKEVSD 60

Query: 61 WE 62
          WE
Sbjct: 61 WE 62


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.311    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 452,125,063
Number of extensions: 15753185
Number of successful extensions: 41917
Number of sequences better than 1.0e-05: 283
Number of HSP's gapped: 41780
Number of HSP's successfully gapped: 283
Length of query: 67
Length of database: 3,060,696,203
Length adjustment: 39
Effective length of query: 28
Effective length of database: 2,693,276,618
Effective search space: 75411745304
Effective search space used: 75411745304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)