BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0007.p (220 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A7GNY3.1 A7GNY3_BACCN NAD-dependent epimerase/dehydratase 200 7e-50 C3BJI8.1 C3BJI8_9BACI Oxidoreductase 198 2e-49 C3AKR4.1 C3AKR4_BACMY Oxidoreductase 198 2e-49 C2W6Z7.1 C2W6Z7_BACCE Oxidoreductase 197 4e-49 C2SJ37.1 C2SJ37_BACCE Oxidoreductase 197 8e-49 >A7GNY3.1 A7GNY3_BACCN NAD-dependent epimerase/dehydratase Length = 219 Score = 200 bits (509), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 102/216 (47%), Positives = 144/216 (66%), Gaps = 2/216 (0%) Query: 3 RIAVVLGATGLVGSALTEDLLNGEWAE-VRVLVRRPMKLRHPGLKQVIIDWERLAEYKEQ 61 R A+VLGA+GLVG +T+ LL+ ++ + V + VR+P++L+H L+Q +D+ L EYKE Sbjct: 4 RTALVLGASGLVGQEVTQLLLDSDYYDSVTIFVRKPLQLKHEKLQQKQVDFSILEEYKEF 63 Query: 62 FAGASAVFCCLGTTIKKAGSQEKFERVDLEYPLAAAALAKTCGVKQFLAVSSMGANVRSR 121 FA VFCCLGTTIKKA ++ F++VD EY L AA L++ GV+ FL +SSM AN +S Sbjct: 64 FA-VDDVFCCLGTTIKKARTKANFKKVDYEYTLRAACLSEKQGVQNFLVISSMSANSKSV 122 Query: 122 AFYSRTKGKLENGLGAIGFQGLHLFRPSLLLGDREESRPGERVAAIVMKALDFAMVGKAA 181 FY + KGK+E L +G +G+H+FRPSLLLG+R+E R GER+A + L F G Sbjct: 123 FFYLQVKGKMEEELQKLGIEGIHIFRPSLLLGERKEFRFGERMAGKIFGLLPFIFKGTLK 182 Query: 182 KYRAVPAAKVARAMMNIALADTGGVHIYTNEVIHVI 217 KY+ + A +VAR M AL + +HIY + I V+ Sbjct: 183 KYKPISAEQVARGMYLAALHEEAVIHIYNSTEITVM 218 >C3BJI8.1 C3BJI8_9BACI Oxidoreductase Length = 219 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 105/216 (48%), Positives = 142/216 (65%), Gaps = 2/216 (0%) Query: 3 RIAVVLGATGLVGSALTEDLLNGEWAE-VRVLVRRPMKLRHPGLKQVIIDWERLAEYKEQ 61 R A+VLGA+GLVG +T+ LL+ ++ + V V VR+P++ H L+Q +D+ L EYKE Sbjct: 4 RTALVLGASGLVGQEVTQLLLDSDYYDSVMVFVRKPLQWEHEKLQQKQVDFSILEEYKEF 63 Query: 62 FAGASAVFCCLGTTIKKAGSQEKFERVDLEYPLAAAALAKTCGVKQFLAVSSMGANVRSR 121 FA VF CLGTTIKKA ++ F++VD EY L AA LA+ GV+ FL +SSMGAN +S Sbjct: 64 FA-VDDVFSCLGTTIKKAKTKANFKKVDYEYTLRAACLAEKQGVQNFLVISSMGANPKSL 122 Query: 122 AFYSRTKGKLENGLGAIGFQGLHLFRPSLLLGDREESRPGERVAAIVMKALDFAMVGKAA 181 FYS+ KGK+E L + G+H+FRPSLLLGDREE R GER+A + L F G Sbjct: 123 FFYSQVKGKMEEELQKLVIGGIHIFRPSLLLGDREEFRFGERMAEKISGVLPFVFNGTLK 182 Query: 182 KYRAVPAAKVARAMMNIALADTGGVHIYTNEVIHVI 217 KY+ + A +VA+ M AL + GVHIY + I ++ Sbjct: 183 KYKPITAEQVAKGMYLAALREESGVHIYNSTEITMM 218 >C3AKR4.1 C3AKR4_BACMY Oxidoreductase Length = 219 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 105/216 (48%), Positives = 142/216 (65%), Gaps = 2/216 (0%) Query: 3 RIAVVLGATGLVGSALTEDLLNGEWAE-VRVLVRRPMKLRHPGLKQVIIDWERLAEYKEQ 61 R A+VLGA+GLVG +T+ LL+ ++ + V V VR+P++ H L+Q +D+ L EYKE Sbjct: 4 RTALVLGASGLVGQEVTQLLLDSDYYDSVMVFVRKPLQWEHEKLQQKQVDFSILEEYKEF 63 Query: 62 FAGASAVFCCLGTTIKKAGSQEKFERVDLEYPLAAAALAKTCGVKQFLAVSSMGANVRSR 121 FA VF CLGTTIKKA ++ F++VD EY L AA LA+ GV+ FL +SSMGAN +S Sbjct: 64 FA-VDDVFSCLGTTIKKAKTKANFKKVDYEYTLRAACLAEKQGVQNFLVISSMGANPKSL 122 Query: 122 AFYSRTKGKLENGLGAIGFQGLHLFRPSLLLGDREESRPGERVAAIVMKALDFAMVGKAA 181 FYS+ KGK+E L + G+H+FRPSLLLGDREE R GER+A + L F G Sbjct: 123 FFYSQVKGKMEEELQKLVIGGIHIFRPSLLLGDREEFRFGERMAEKISGVLPFVFNGTLK 182 Query: 182 KYRAVPAAKVARAMMNIALADTGGVHIYTNEVIHVI 217 KY+ + A +VA+ M AL + GVHIY + I ++ Sbjct: 183 KYKPITAEQVAKGMYLAALREESGVHIYNSTEITMM 218 >C2W6Z7.1 C2W6Z7_BACCE Oxidoreductase Length = 219 Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 103/216 (47%), Positives = 141/216 (65%), Gaps = 2/216 (0%) Query: 3 RIAVVLGATGLVGSALTEDLLNGEWAE-VRVLVRRPMKLRHPGLKQVIIDWERLAEYKEQ 61 R A+VLGA+GLVG +T+ LL+ ++ + V + VR+P++ H L+Q +D+ L EYKE Sbjct: 4 RTALVLGASGLVGQEVTQRLLDSDYYDSVMIFVRKPLQWEHEKLQQKQVDFSILEEYKEF 63 Query: 62 FAGASAVFCCLGTTIKKAGSQEKFERVDLEYPLAAAALAKTCGVKQFLAVSSMGANVRSR 121 FA VF CLGTTIKKA ++ F++VD EY L AA LA+ GV+ FL +SSMGAN +S Sbjct: 64 FA-VDDVFSCLGTTIKKAKTKANFKKVDYEYTLRAACLAEKQGVQNFLVISSMGANPKSL 122 Query: 122 AFYSRTKGKLENGLGAIGFQGLHLFRPSLLLGDREESRPGERVAAIVMKALDFAMVGKAA 181 FYS+ KGK+E L + G+H+FRPSLLLGDREE R GER+A + F G Sbjct: 123 FFYSQVKGKMEEELQKLVIGGIHIFRPSLLLGDREEFRFGERMAEKIFGIFPFVFNGTFK 182 Query: 182 KYRAVPAAKVARAMMNIALADTGGVHIYTNEVIHVI 217 KY+ + A +VA+ M AL + GVHIY + I ++ Sbjct: 183 KYKPITAEQVAKGMYLAALREESGVHIYNSTEITMM 218 >C2SJ37.1 C2SJ37_BACCE Oxidoreductase Length = 219 Score = 197 bits (500), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 102/216 (47%), Positives = 143/216 (66%), Gaps = 3/216 (1%) Query: 3 RIAVVLGATGLVGSALTEDLLNGEWAE-VRVLVRRPMKLRHPGLKQVIIDWERLAEYKEQ 61 R A+VLGA+GLVG +T LL+ ++ + V + VR P++L+H L+Q +D+ L EYKE Sbjct: 4 RTALVLGASGLVGQEITRLLLDSDYYDSVTIFVREPLQLQHEKLQQKQVDFSVLEEYKEF 63 Query: 62 FAGASAVFCCLGTTIKKAGSQEKFERVDLEYPLAAAALAKTCGVKQFLAVSSMGANVRSR 121 FA VF CLGTTIKKA S+ F++VD EY L AA LA+ GV+ FL +SSMGA +S Sbjct: 64 FA-VDDVFSCLGTTIKKAKSKSNFKKVDYEYTLRAACLAEKQGVQNFLVISSMGAKPKSF 122 Query: 122 AFYSRTKGKLENGLGAIGFQGLHLFRPSLLLGDREESRPGERVAAIVMKALDFAMVGKAA 181 FYS+ KGK+E L + G+H+FRPSLL+G+R+E R GER+A + + L F G Sbjct: 123 FFYSQVKGKMEEELKKLVIGGIHIFRPSLLVGNRQEYRFGERMAEKLSRILPFIFKGAFK 182 Query: 182 KYRAVPAAKVARAMMNIALADTGGVHIY-TNEVIHV 216 KY+ + A VA+ M AL + G+HIY +N++I + Sbjct: 183 KYKPISAKDVAKGMYITALREESGIHIYSSNDIIEI 218 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,190,660,378 Number of extensions: 44466985 Number of successful extensions: 107185 Number of sequences better than 1.0e-05: 622 Number of HSP's gapped: 106648 Number of HSP's successfully gapped: 622 Length of query: 220 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 90 Effective length of database: 1,835,964,253 Effective search space: 165236782770 Effective search space used: 165236782770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)