BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0006.p
         (134 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K4R9.1 B3K4R9_9BACI Endoribonuclease L-PSP                          201   1e-50
B3K956.1 B3K956_9BACI Endoribonuclease L-PSP                          181   2e-44
B1BEV6.1 B1BEV6_CLOPE Putative endoribonuclease L-PSP                 167   2e-40
Q8XLM9.1 Q8XLM9_CLOPE Probable translation initiation inhibitor       167   2e-40
Q0TRM7.1 Q0TRM7_CLOP1 Putative endoribonuclease L-PSP                 167   2e-40

>B3K4R9.1 B3K4R9_9BACI Endoribonuclease L-PSP
          Length = 126

 Score =  201 bits (512), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/125 (79%), Positives = 108/125 (86%)

Query: 9   MSKKQVATEKAPGAIGPYSQAVIAGNWVYTSGQLGLNPETGTLAEGVVEQARQSLSNVKA 68
           MSK  ++T+KAPGAIGPYSQAV    +VYTSGQLGLNPETG   EGV EQA+ SLSNVKA
Sbjct: 1   MSKHIISTDKAPGAIGPYSQAVEINGFVYTSGQLGLNPETGEFGEGVQEQAKLSLSNVKA 60

Query: 69  ILEEAGASLEHVVKTTVYLKDMNDFAAVNEVYSSFFTEPYPARSAVEVARLPKDGLVEIE 128
           ILE AG SL+ VVKTTV+LKDMNDFAAVNEVY SFF+EPYPARSAVEVARLPKDGLVEIE
Sbjct: 61  ILEAAGTSLDQVVKTTVFLKDMNDFAAVNEVYGSFFSEPYPARSAVEVARLPKDGLVEIE 120

Query: 129 AVARK 133
            +A K
Sbjct: 121 VIAVK 125


>B3K956.1 B3K956_9BACI Endoribonuclease L-PSP
          Length = 128

 Score =  181 bits (459), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/123 (72%), Positives = 104/123 (84%), Gaps = 1/123 (0%)

Query: 11  KKQVATEKAPGAIGPYSQAVIAGNWVYTSGQLGLNPETGTLAEGVVEQARQSLSNVKAIL 70
           +K +AT++APGAIGPYSQAV  GN ++TSGQLG++  +G  A  V EQA++SL NVKAIL
Sbjct: 6   RKTIATQQAPGAIGPYSQAVQYGNLLFTSGQLGMD-ASGHFAPTVEEQAKRSLLNVKAIL 64

Query: 71  EEAGASLEHVVKTTVYLKDMNDFAAVNEVYSSFFTEPYPARSAVEVARLPKDGLVEIEAV 130
           E AG  +EH+VKTTV+LKDMNDF AVNEVY+SFF EPYPARSAVEVARLPKDGLVEIE V
Sbjct: 65  EAAGFGMEHIVKTTVFLKDMNDFQAVNEVYASFFAEPYPARSAVEVARLPKDGLVEIEVV 124

Query: 131 ARK 133
           A K
Sbjct: 125 ASK 127


>B1BEV6.1 B1BEV6_CLOPE Putative endoribonuclease L-PSP
          Length = 126

 Score =  167 bits (424), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/126 (62%), Positives = 99/126 (78%)

Query: 9   MSKKQVATEKAPGAIGPYSQAVIAGNWVYTSGQLGLNPETGTLAEGVVEQARQSLSNVKA 68
           M+K+ + T KAPGAIGPYSQ +  G++VYTSGQ+ LNPETG +A  + EQ  QSL NVKA
Sbjct: 1   MAKEIIKTNKAPGAIGPYSQGIKIGDFVYTSGQIPLNPETGVMAGSIEEQTAQSLKNVKA 60

Query: 69  ILEEAGASLEHVVKTTVYLKDMNDFAAVNEVYSSFFTEPYPARSAVEVARLPKDGLVEIE 128
           ILE AG S++ V+KTTV+L DMNDF  +NEVY+++FTE  PARSAVEVA+LPKD  +EIE
Sbjct: 61  ILEAAGTSMDKVIKTTVFLSDMNDFVRMNEVYATYFTENQPARSAVEVAKLPKDAKIEIE 120

Query: 129 AVARKK 134
            +A  K
Sbjct: 121 VIATLK 126


>Q8XLM9.1 Q8XLM9_CLOPE Probable translation initiation inhibitor
          Length = 126

 Score =  167 bits (424), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/126 (62%), Positives = 99/126 (78%)

Query: 9   MSKKQVATEKAPGAIGPYSQAVIAGNWVYTSGQLGLNPETGTLAEGVVEQARQSLSNVKA 68
           M+K+ + T KAPGAIGPYSQ +  G++VYTSGQ+ LNPETG +A  + EQ  QSL NVKA
Sbjct: 1   MAKEIIKTNKAPGAIGPYSQGIKIGDFVYTSGQIPLNPETGVMAGSIEEQTAQSLENVKA 60

Query: 69  ILEEAGASLEHVVKTTVYLKDMNDFAAVNEVYSSFFTEPYPARSAVEVARLPKDGLVEIE 128
           ILE AG S++ V+KTTV+L DMNDF  +NEVY+++FTE  PARSAVEVA+LPKD  +EIE
Sbjct: 61  ILEAAGTSMDKVIKTTVFLSDMNDFVRMNEVYATYFTENQPARSAVEVAKLPKDAKIEIE 120

Query: 129 AVARKK 134
            +A  K
Sbjct: 121 VIATLK 126


>Q0TRM7.1 Q0TRM7_CLOP1 Putative endoribonuclease L-PSP
          Length = 126

 Score =  167 bits (424), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/126 (62%), Positives = 99/126 (78%)

Query: 9   MSKKQVATEKAPGAIGPYSQAVIAGNWVYTSGQLGLNPETGTLAEGVVEQARQSLSNVKA 68
           M+K+ + T KAPGAIGPYSQ +  G++VYTSGQ+ LNPETG +A  + EQ  QSL NVKA
Sbjct: 1   MAKEIIKTNKAPGAIGPYSQGIKIGDFVYTSGQIPLNPETGVMAGSIEEQTAQSLENVKA 60

Query: 69  ILEEAGASLEHVVKTTVYLKDMNDFAAVNEVYSSFFTEPYPARSAVEVARLPKDGLVEIE 128
           ILE AG S++ V+KTTV+L DMNDF  +NEVY+++FTE  PARSAVEVA+LPKD  +EIE
Sbjct: 61  ILEAAGTSMDKVIKTTVFLSDMNDFVRMNEVYATYFTENQPARSAVEVAKLPKDAKIEIE 120

Query: 129 AVARKK 134
            +A  K
Sbjct: 121 VIATLK 126


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.309    0.126    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 728,103,070
Number of extensions: 25527456
Number of successful extensions: 72907
Number of sequences better than 1.0e-05: 2688
Number of HSP's gapped: 71254
Number of HSP's successfully gapped: 2749
Length of query: 134
Length of database: 3,060,696,203
Length adjustment: 98
Effective length of query: 36
Effective length of database: 2,137,436,733
Effective search space: 76947722388
Effective search space used: 76947722388
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 126 (53.1 bits)