BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0002.p (975 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4S7.1 B3K4S7_9BACI Non-specific serine/threonine protein kina... 1162 0.0 Q0W926.1 Q0W926_UNCMA Putative DNA/RNA helicase (SNF2 family) EC... 642 0.0 A4FA54.1 A4FA54_SACEN Probable helicase, Snf2/Rad54 family 614 e-173 Q8VJQ4.1 Q8VJQ4_MYCTU Helicase, SNF2/RAD54 family 592 e-167 A5WP77.1 A5WP77_MYCTF Helicase helZ 590 e-166 >B3K4S7.1 B3K4S7_9BACI Non-specific serine/threonine protein kinase EC=2.7.11.1 Length = 1033 Score = 1162 bits (3006), Expect = 0.0, Method: Compositional matrix adjust. Identities = 597/956 (62%), Positives = 705/956 (73%), Gaps = 13/956 (1%) Query: 27 ALAPKDAFELLLGWDEQLCRSQGLEPGGELRYWAAAARFALELMGTGGIVXXXXXXXXXX 86 AL P DAF +L+ D + ++QGL G E+ YW A+RFALEL+ G Sbjct: 84 ALTPGDAFSMLVSLDPEHTQAQGLAIGEEMEYWVQASRFALELLLQGKFAPGTAEVPSAG 143 Query: 87 XXXXXXEQAASAAWSPAFRKEADRELFLQMAASMPVLALGTHVA-EESDLSSREDAGAYV 145 A W P E D FLQ+AA++P +A+GT A +D S+RE+AGA V Sbjct: 144 RRKTSM-HTIKAVWKPQLNTE-DTARFLQLAANIPPIAIGTPAALAGTDPSTREEAGAIV 201 Query: 146 LYSFLQAVMTAEVKRVVAENEGKLVPYKANYRRGYSPLTELWWNSLLTGSRDIPVQGTPX 205 LYSFL V+ ++ + V E+E KL Y ANYRRG SPLTELWWNSLLT SRDIP+QGT Sbjct: 202 LYSFLCGVIDSQARAAVRESEDKLKAYLANYRRGQSPLTELWWNSLLTVSRDIPIQGTVE 261 Query: 206 XXXXXXXXXXXXXGSEVPHA--ETEEARSGQLSLGLRLEPPADES-EEWRLSFWVESREE 262 G+ P+A E + +G L+LGLRLEPP +ES ++W+++FW S+E+ Sbjct: 262 EVGELEEAVERVGGTVFPYAGGEDQPPENGTLALGLRLEPPLEESRKDWKVTFWARSQED 321 Query: 263 GEFWLPAAAIWGSREREFTLWGKRYRNIQQQLLSALGRAAKLSPDIQRALAMPAPDGVEL 322 +P ++WGS E + L G+ Y Q QLL LG AA L+P++ L AP+ V L Sbjct: 322 EGLLMPVRSVWGSPESDQLLRGRMYAGAQLQLLMRLGEAAALAPELSEGLYGRAPESVTL 381 Query: 323 AAEQLYLFLKESVQPLRERGITVQMPSRWSREGRRRIGMKMKMQPPAGGIDGPAQAA--L 380 E+L F+KESV L G+TVQMPSRWSREGRRR+G+ +KM P A G AQ+ L Sbjct: 382 PLERLSTFMKESVPRLTASGVTVQMPSRWSREGRRRVGLSLKMMPDARS-SGEAQSTPVL 440 Query: 381 GMEQLISFRIEASLGDSDITEDELNALVEAGVPYVRFRGEWIEIDPKEVRQVLRYMKRNE 440 GME L+SF+I A++G +T +EL L E +PYV+FRGEW+E+D KE+ QVLR+MKR+E Sbjct: 441 GMEHLVSFQISAAMGGHTLTREELKFLAEQNLPYVQFRGEWVEVDLKEINQVLRFMKRHE 500 Query: 441 SGEMSAAEWMRLEAEDGNERLWKGMSVTGMETSGLLASLMQGDMLRHLPVRAVPPDLHGT 500 GEM AEWM L AE ERLWKG+ + +ET+GLL+SL+ G+ +R LP R +P LHG Sbjct: 501 KGEMELAEWMNLSAEMDGERLWKGLFIEEVETTGLLSSLLDGETVRKLPSRPIPSSLHGE 560 Query: 501 LRPYQERGFQWLASLSGLGFGVCLADDMGLGKTVQVITCLLDRALTAPPEEQREPVLILC 560 LRPYQERG+QWL+ + LGFGVCLADDMGLGKTVQVITCLL+R T E +PVLI+C Sbjct: 561 LRPYQERGYQWLSVMRDLGFGVCLADDMGLGKTVQVITCLLERLNT---EAAGDPVLIIC 617 Query: 561 PTSLLGNWQRELQRFAPSLXXXXXXXXXXXXXXXFAQLAASHEIVLTTYHLAGRDSEDLA 620 PTSLLGNWQRE+QRFAP L F Q AA H+IVLTTYHLAGRD DL+ Sbjct: 618 PTSLLGNWQREIQRFAPDLTLHVHHGVRRLRGDDFLQEAADHDIVLTTYHLAGRDGGDLS 677 Query: 621 GVRWSTVVLDEAQYIKNHRTKQAQSVMKLSAPHRIAMTGTPVENRLGELWSIFHFLNPGY 680 ++WS+VVLDEAQYIKN+RTKQAQSVMKLSAPHRIAMTGTPVENRL ELWSIFHFLNPGY Sbjct: 678 AIQWSSVVLDEAQYIKNYRTKQAQSVMKLSAPHRIAMTGTPVENRLAELWSIFHFLNPGY 737 Query: 681 LGTYHSFRQRYVSGEGG-DRLRELHRLVSPFLLRRLKSDPDISKDLPEKLELKQYCTLTE 739 LG+++SFRQRY GEG +R RELH+LVSPF+LRRLKSDPDI KDLPEKLELK YC LTE Sbjct: 738 LGSFNSFRQRYAPGEGQQERFRELHKLVSPFMLRRLKSDPDIRKDLPEKLELKSYCPLTE 797 Query: 740 TQAALYQGVVNEMLGVIGERSGMARRGLVLSSLTKLKQICDHPQLFRGDEGRGQRSEASG 799 Q A+YQ VV+EM+G I R+GMAR+GLVLSSLTKLKQICDHPQL R D+GR R E+SG Sbjct: 798 VQGAMYQAVVDEMMGQIESRTGMARKGLVLSSLTKLKQICDHPQLLRRDDGRAVRPESSG 857 Query: 800 KMEVMFEVLDSIAGLGESALIFTQYVAMGELLVSRLARRYGKAPLFLHGGVPKRERDEMV 859 KME M E+LDSIA +GESALIFTQYV MGELLVS L R+YGK P FLHGGV KRERDEMV Sbjct: 858 KMERMLEILDSIADVGESALIFTQYVGMGELLVSMLGRKYGKQPYFLHGGVQKRERDEMV 917 Query: 860 HAFQEGEGPAFFVLSLKAGGVGLNLTRANHVLHYDRWWNPAVENQATDRAFRIGQHKNVQ 919 AFQ GEG FFVLSLKAGGVGLNLTRANHVLHYDRWWNPAVENQATDR FRIGQ++NVQ Sbjct: 918 RAFQAGEGTEFFVLSLKAGGVGLNLTRANHVLHYDRWWNPAVENQATDRVFRIGQNRNVQ 977 Query: 920 VHKLICQGTLEERIDELIERKKNLSEQVVGSGENWLTEMSNHELKELIELQGQDWM 975 VHKLI QGTLEERIDELIE+KK LSEQVVGSGE WLTEMS+ EL++LIELQ QDWM Sbjct: 978 VHKLISQGTLEERIDELIEQKKALSEQVVGSGETWLTEMSDGELRQLIELQEQDWM 1033 >Q0W926.1 Q0W926_UNCMA Putative DNA/RNA helicase (SNF2 family) EC=3.6.-.- Length = 1042 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/958 (37%), Positives = 547/958 (57%), Gaps = 60/958 (6%) Query: 28 LAPKDAFELLLGWDEQLCRSQGLEPGGELRYWAAAARFALELMGTGGIVXXXXXXXXXXX 87 + P +A LL E R + G +L YW+ A+F L+L+ Sbjct: 122 IKPGNALVLLSSIAESQKRIGDMAIGPDLLYWSKVAKFTLKLL---------ISQQFRPE 172 Query: 88 XXXXXEQAASAAWSPAFRKEADRELFLQMAASMPVLALGTHVAEESDLSSREDAGAYVLY 147 A + W A E DR+ + + SMP+ + V+ ++ + +R++A L Sbjct: 173 VVEVMSGKAYSRWRFALTDETDRKHYASLENSMPLACIA--VSGKAGIYNRKEA----LD 226 Query: 148 SFLQAVMTAEVKRVVAENEGKLVPYKANYRRGYSPLTELWWNSLLTGSRDIPVQGTPXXX 207 F+ + ++ +A +P + R + L++ W +SL TG + Sbjct: 227 LFINTALDTFIRDQIA------LPADS---RMTNLLSQAWLDSLGTGE-------SIRLS 270 Query: 208 XXXXXXXXXXXGSEVPHAETEEARSGQLSLGLRLEPPADESE----EWRLSFWVESREEG 263 G +TE ++ L LEPPA ++E W L + +++ ++ Sbjct: 271 APEMKKLKDSAGRWTSRMKTESKQA--LKTCFILEPPAPDTEYPEAPWNLRYCLQASDDP 328 Query: 264 EFWLPAAAIWGSREREFTLWGKRYRNIQQQLLSALGRAAKLSPDIQRALAMPAPDGVELA 323 +PA +W ++ KRY N Q+QLL LG+A ++ P+I+ +L P L+ Sbjct: 329 SLVIPAETVWKELKKTLKYLNKRYDNPQEQLLQDLGKAMQMFPEIEPSLNTSKPLSATLS 388 Query: 324 AEQLYLFLKESVQPLRERGITVQMPSRW-SREGRRRIGMKMKMQPPAGGIDGPAQAALGM 382 + Y FL E+ L++ G ++ +P W + GR ++G +++ +P A G G +Q M Sbjct: 389 TSEAYKFLTEAAPLLQDSGYSIILPEWWRNSTGRLKLGARLRFKPKAEGKAGKSQ--FTM 446 Query: 383 EQLISFRIEASLGDSDITEDELNALVEAGVPYVRFRGEWIEIDPKEVRQVLRYMKRNESG 442 + L+S+ +LGD +ITE E L P ++ G+W + +++ +++ + ++G Sbjct: 447 DTLVSYDWRLALGDQEITETEFRKLAALKEPLLQIGGKWFALKKEDIDSIMKAFRAKKTG 506 Query: 443 EMSAAEWMRLEAEDGNERLWKGMSVTGMETSGLLASLMQGDMLRHLPVRAVPPD-LHGTL 501 EM+ +E +RL +G + G+ V+GM++SG LA L PPD +G L Sbjct: 507 EMALSEALRL---NGGLEDFNGIPVSGMKSSGWLAELFDRLAAGEKITSLAPPDGFNGEL 563 Query: 502 RPYQERGFQWLASLSGLGFGVCLADDMGLGKTVQVITCLLDRALTAPPEEQRE---PVLI 558 R YQ +G+ WLA + G G LADDMGLGKT+Q++ E++R P L+ Sbjct: 564 RDYQVKGYSWLAFMKKYGLGSILADDMGLGKTIQLLA-------LLLKEKERGTKGPTLL 616 Query: 559 LCPTSLLGNWQRELQRFAPSLXXXXXXXXXXXXXXXFAQLAASHEIVLTTYHLAGRDSED 618 +CPTS+LGNWQRE ++FAP+L F ++ +H+++L+TY A RD E Sbjct: 617 ICPTSILGNWQREAKKFAPALKVHIHHGAGRADKEQFGKIVKAHDLILSTYAHAYRDEEL 676 Query: 619 LAGVRWSTVVLDEAQYIKNHRTKQAQSVMKLSAPHRIAMTGTPVENRLGELWSIFHFLNP 678 L V W VVLDEAQ IKNH T+QA+++ L A HRIAMTGTP+ENRL ELWSI FLNP Sbjct: 677 LKEVNWKLVVLDEAQNIKNHHTRQARAIRALKADHRIAMTGTPIENRLSELWSIVDFLNP 736 Query: 679 GYLGTYHSFRQRYV----SGEGGDRLRELHRLVSPFLLRRLKSDPDISKDLPEKLELKQY 734 GYLG +FR+++ + R +L + + P +LRR+K+DP I KDLP+K+E+K+ Sbjct: 737 GYLGKAETFRKQFAIPIERYDDAARSEKLKQAIKPLVLRRVKTDPAIIKDLPDKIEIKEP 796 Query: 735 CTLTETQAALYQGVVNEMLGVIGERSGMARRGLVLSSLTKLKQICDHPQLF--RGDEGRG 792 C LT+ QA LY+ +V ML I + + M RRG+VL+SL KLKQ+CDHP L+ G Sbjct: 797 CNLTKEQATLYEAIVENMLKSIDKATAMQRRGIVLASLMKLKQVCDHPSLYIKTGAVTDD 856 Query: 793 QRSEASGKMEVMFEVLDSIAGLGESALIFTQYVAMGELLVSRLARRYGKAPLFLHGGVPK 852 + SGK++ + E+L+ G+S LIFTQ+V MGE+L + L + + LFLHGGVP+ Sbjct: 857 KTLIRSGKLKRLTELLEEALAEGDSVLIFTQFVEMGEMLKAYLQSTFDEEALFLHGGVPQ 916 Query: 853 RERDEMVHAFQEGEGPAFFVLSLKAGGVGLNLTRANHVLHYDRWWNPAVENQATDRAFRI 912 + RD+MV F E +GP F++SLKAGGVGLNLT+A+HV H+DRWWNPAVENQATDRA+RI Sbjct: 917 KARDKMVLRFGEKDGPRIFIVSLKAGGVGLNLTKASHVFHFDRWWNPAVENQATDRAYRI 976 Query: 913 GQHKNVQVHKLICQGTLEERIDELIERKKNLSEQVVGSGENWLTEMSNHELKELIELQ 970 GQ KNV VHK +C GTLEE+IDELIE KK LS ++G+GE+W+TE+S +L++++ L+ Sbjct: 977 GQSKNVLVHKFVCAGTLEEKIDELIESKKALSANILGTGEDWITELSTEQLRDMVMLR 1034 >A4FA54.1 A4FA54_SACEN Probable helicase, Snf2/Rad54 family Length = 988 Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust. Identities = 340/741 (45%), Positives = 450/741 (60%), Gaps = 39/741 (5%) Query: 244 PADESEEWRLSFWVESREEGEFWLPAAAIWGSREREFTLWGKRYRNIQQQLLSALGRAAK 303 PAD+ +WRL F +++ E+ + A +W W ++ LL+ LGRA++ Sbjct: 271 PADD--DWRLEFLLQATEDPSVLVSAEEVWRDHGSVLRRW---VSEPEELLLADLGRASR 325 Query: 304 LSPDIQRALAMPAPDGVELAAEQLYLFLKESVQPLRERGITVQMPSRWSREGRRRIGMKM 363 L P + AL P G+ L + Y FL S L + G V +PS W R +G+K+ Sbjct: 326 LYPGLDEALREAHPAGIRLDVDGAYDFLTHSAL-LDQAGYGVLLPSWWGRT--HELGLKL 382 Query: 364 KMQPPAGGIDGPAQAA----LGMEQLISFRIEASLGDSDITEDELNALVEAGVPYVRFRG 419 AGG A G++ L+ +R + +LG +TE EL+ L A VP VR RG Sbjct: 383 T----AGGRGTSGVVAKEDGFGLDALVDYRWDLALGGERLTEAELSDLAAAKVPLVRVRG 438 Query: 420 EWIEIDPKEVRQVLRYMKRNESGEMSAAEWMRLEAEDGNERLWKGMSVTGMETSGLLASL 479 +W+++D K + L ++KR SG+M+A + + A ++ M VTG+ G L L Sbjct: 439 QWVQVDQKRLAAGLAFLKRAGSGQMTAGDVLAQAALHPDDTA-HPMPVTGVSADGWLGDL 497 Query: 480 MQGDMLRHLPVRAVPPDLHGTLRPYQERGFQWLASLSGLGFGVCLADDMGLGKTVQVITC 539 + G + RHL P TLRPYQ RG WLA L LG G CLADDMGLGKTVQ+ Sbjct: 498 LSGQVERHLEPIDPGPAFTATLRPYQRRGLAWLAFLDRLGLGACLADDMGLGKTVQL--- 554 Query: 540 LLDRALTAPPEEQREPVLILCPTSLLGNWQRELQRFAPSLXXXXXXXXXXXXXXXFAQLA 599 L +R P L++CP SL+GNWQRE RFAP L + A Sbjct: 555 -----LALESLARRGPTLLICPMSLVGNWQREAARFAPGLSVHVHHGADRLTGADLVETA 609 Query: 600 ASHEIVLTTYHLAGRDSEDLAGVRWSTVVLDEAQYIKNHRTKQAQSVMKLSAPHRIAMTG 659 A H++V+TTY LA RD+E L V W VVLDEAQ IKN ++Q++ + L A HR+A+TG Sbjct: 610 AEHDLVITTYALATRDAETLGEVGWDRVVLDEAQNIKNSASRQSRVIRALPARHRVALTG 669 Query: 660 TPVENRLGELWSIFHFLNPGYLGTYHSFRQRY---VSGEGG-DRLRELHRLVSPFLLRRL 715 TPVENRL ELWSI F NPG LG+ H+FR R+ V +G D L R+ PF+LRRL Sbjct: 670 TPVENRLAELWSIMDFANPGVLGSVHTFRARFAVPVERDGDTDAAERLRRVTGPFVLRRL 729 Query: 716 KSDPDISKDLPEKLELKQYCTLTETQAALYQGVVNEMLGVIGERSGMARRGLVLSSLTKL 775 K+DP I DLPEK E++Q C LT QA+LYQ VV++ML I E GM RRGLVL++++KL Sbjct: 730 KTDPAIIGDLPEKFEMRQLCNLTAEQASLYQAVVDDMLRRIDESDGMERRGLVLATMSKL 789 Query: 776 KQICDHPQLFRGD----EGRGQRSEASGKMEVMFEVLDSIAGLGESALIFTQYVAMGELL 831 KQ+C+HP F GD GR SGK+ + E+L+ + G+ AL FTQ+ G +L Sbjct: 790 KQVCNHPAQFLGDGSPLAGR------SGKLARLEEILEEVLADGDKALCFTQFAGFGGML 843 Query: 832 VSRLARRYGKAPLFLHGGVPKRERDEMVHAFQEGEGPAFFVLSLKAGGVGLNLTRANHVL 891 V L+ R+ L+LHGG PK++RD MV FQ +GPA F+LSLKAGG GL LT ANHV+ Sbjct: 844 VPHLSARFDTEVLYLHGGTPKKQRDAMVERFQSADGPAVFMLSLKAGGTGLTLTGANHVI 903 Query: 892 HYDRWWNPAVENQATDRAFRIGQHKNVQVHKLICQGTLEERIDELIERKKNLSEQVVGSG 951 H DRWWNPAVE+QATDRAFRIGQ ++VQV KL C GTLEE+ID ++E KK L++ VVG+G Sbjct: 904 HLDRWWNPAVEDQATDRAFRIGQRRDVQVRKLTCIGTLEEKIDRMLEDKKALAQLVVGAG 963 Query: 952 ENWLTEMSNHELKELIELQGQ 972 E+WLTE+S L+EL+ L G+ Sbjct: 964 EHWLTELSTGRLRELLTLSGE 984 >Q8VJQ4.1 Q8VJQ4_MYCTU Helicase, SNF2/RAD54 family Length = 954 Score = 592 bits (1525), Expect = e-167, Method: Compositional matrix adjust. Identities = 331/730 (45%), Positives = 447/730 (61%), Gaps = 25/730 (3%) Query: 251 WRLSFWVESREEGEFWLPAAAIWGSREREFTLWGKRYRNIQQQLLSALGRAAKLSPDIQR 310 WRL F ++S ++ +PA W + W R Q+ LL+ LGRA+++ P++ Sbjct: 232 WRLEFLLQSTQDPSLLVPAEQAWND-DGSLRRWLDRP---QELLLTELGRASRIFPELVP 287 Query: 311 ALAMPAPDGVELAAEQLYLFLKESVQPLRERGITVQMPSRWSREGRRRIGMKMKMQPPAG 370 AL P G+EL A+ Y FL + L E G V +PS W R RR++G+ + P Sbjct: 288 ALRTACPSGLELDADGAYRFLSGTAAVLDEAGFGVLLPSWWDR--RRKLGLVLSAYTPVD 345 Query: 371 GIDGPAQAALGMEQLISFRIEASLGDSDITEDELNALVEAGVPYVRFRGEWIEIDPKEVR 430 G+ G A + G EQL+ FR E ++GD ++E+E+ AL E P +R RG+W+ +D +++R Sbjct: 346 GVVGKA-SKFGREQLVEFRWELAVGDDPLSEEEIAALTETKSPLIRLRGQWVALDTEQLR 404 Query: 431 QVLRYMKRNESGEMSAAEWMRLEAEDGNERLWKGMSVTGMETSGLLASLMQGDMLRHLPV 490 + L +++R +G + AE + L A ++ + + VT + G L L+ G L Sbjct: 405 RGLEFLERKPTGRKTTAEILALAASHPDD-VDTPLEVTAVRADGWLGDLLAGAAAASLQP 463 Query: 491 RAVPPDLHGTLRPYQERGFQWLASLSGLGFGVCLADDMGLGKTVQVITCLLDRALTAPPE 550 P TLRPYQ+RG WLA LS LG G CLADDMGLGKTVQ++ ++ + Sbjct: 464 LDPPDGFTATLRPYQQRGLAWLAFLSSLGLGSCLADDMGLGKTVQLLALETLESVQRHQD 523 Query: 551 EQREPVLILCPTSLLGNWQRELQRFAPSLXXXXXXXXXXXXXXXFAQLAASHEIVLTTYH 610 P L+LCP SL+GNWQ+E RFAP+L ++V++TY Sbjct: 524 RGVGPTLLLCPMSLVGNWQQEAARFAPNLRVYAHHGGARLHGEALRDHLERTDLVVSTYT 583 Query: 611 LAGRDSEDLAGVRWSTVVLDEAQYIKNHRTKQAQSVMKLSAPHRIAMTGTPVENRLGELW 670 A RD ++LA W+ VVLDEAQ +KN ++ A++V +L A HR+A+TGTP+ENRL ELW Sbjct: 584 TATRDIDELAEYEWNRVVLDEAQAVKNSLSRAAKAVRRLRAAHRVALTGTPMENRLAELW 643 Query: 671 SIFHFLNPGYLGTYHSFRQRYV-------SGEGGDRLRELHRLVSPFLLRRLKSDPDISK 723 SI FLNPG LG+ FR RY E +RLR R P++LRRLK+DP I Sbjct: 644 SIMDFLNPGLLGSSERFRTRYAIPIERHGHTEPAERLRASTR---PYILRRLKTDPAIID 700 Query: 724 DLPEKLELKQYCTLTETQAALYQGVVNEMLGVIGERSGMARRGLVLSSLTKLKQICDHP- 782 DLPEK+E+KQYC LT QA+LYQ VV +M+ I G+ RRG VL+++ KLKQ+C+HP Sbjct: 701 DLPEKIEIKQYCQLTTEQASLYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPA 760 Query: 783 QLFRGDEGRGQRSEASGKMEVMFEVLDSIAGLGESALIFTQYVAMGELLVSRLARRYGKA 842 QL G+RS GK+ + E+L+ I G+ L FTQ+ ELLV LA R+G+A Sbjct: 761 QLLHDRSPVGRRS---GKVIRLEEILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRA 817 Query: 843 P---LFLHGGVPKRERDEMVHAFQEGEGPAFFVLSLKAGGVGLNLTRANHVLHYDRWWNP 899 +LHGG P++ RDEMV FQ G+GP F+LSLKAGG GLNLT ANHV+H DRWWNP Sbjct: 818 ARDIAYLHGGTPRKRRDEMVARFQSGDGPPIFLLSLKAGGTGLNLTAANHVVHLDRWWNP 877 Query: 900 AVENQATDRAFRIGQHKNVQVHKLICQGTLEERIDELIERKKNLSEQVVGSGENWLTEMS 959 AVENQATDRAFRIGQ + VQV K IC GTLEE+IDE+IE KK L++ VV GE WLTE+S Sbjct: 878 AVENQATDRAFRIGQRRTVQVRKFICTGTLEEKIDEMIEEKKALADLVVTDGEGWLTELS 937 Query: 960 NHELKELIEL 969 +L+E+ L Sbjct: 938 TRDLREVFAL 947 >A5WP77.1 A5WP77_MYCTF Helicase helZ Length = 1013 Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust. Identities = 331/730 (45%), Positives = 447/730 (61%), Gaps = 25/730 (3%) Query: 251 WRLSFWVESREEGEFWLPAAAIWGSREREFTLWGKRYRNIQQQLLSALGRAAKLSPDIQR 310 WRL F ++S ++ +PA W + W R Q+ LL+ LGRA+++ P++ Sbjct: 291 WRLEFLLQSTQDPSLLVPAEQAWND-DGSLRRWLDRP---QELLLTELGRASRIFPELVP 346 Query: 311 ALAMPAPDGVELAAEQLYLFLKESVQPLRERGITVQMPSRWSREGRRRIGMKMKMQPPAG 370 AL P G+EL A+ Y FL + L E G V +PS W R RR++G+ + P Sbjct: 347 ALRTACPSGLELDADGAYRFLSGTAAVLDEAGFGVLLPSWWDR--RRKLGLVLSAYTPVD 404 Query: 371 GIDGPAQAALGMEQLISFRIEASLGDSDITEDELNALVEAGVPYVRFRGEWIEIDPKEVR 430 G+ G A + G EQL+ FR E ++GD ++E+E+ AL E P +R RG+W+ +D +++R Sbjct: 405 GVVGKA-SKFGREQLVEFRWELAVGDDPLSEEEIAALTETKSPLIRLRGQWVALDTEQLR 463 Query: 431 QVLRYMKRNESGEMSAAEWMRLEAEDGNERLWKGMSVTGMETSGLLASLMQGDMLRHLPV 490 + L +++R +G + AE + L A ++ + + VT + G L L+ G L Sbjct: 464 RGLEFLERKPTGRKTTAEILALAASHPDD-VDTPLEVTAVRADGWLGDLLAGAAAASLQP 522 Query: 491 RAVPPDLHGTLRPYQERGFQWLASLSGLGFGVCLADDMGLGKTVQVITCLLDRALTAPPE 550 P TLRPYQ+RG WLA LS LG G CLADDMGLGKTVQ++ ++ + Sbjct: 523 LDPPDGFTATLRPYQQRGLAWLAFLSSLGLGSCLADDMGLGKTVQLLALETLESVQRHQD 582 Query: 551 EQREPVLILCPTSLLGNWQRELQRFAPSLXXXXXXXXXXXXXXXFAQLAASHEIVLTTYH 610 P L+LCP SL+GNWQ+E RFAP+L ++V++TY Sbjct: 583 RGVGPTLLLCPMSLVGNWQQEAARFAPNLRVYAHHGGARLHGEALRDHLERTDLVVSTYT 642 Query: 611 LAGRDSEDLAGVRWSTVVLDEAQYIKNHRTKQAQSVMKLSAPHRIAMTGTPVENRLGELW 670 A RD ++LA W+ VVLDEAQ +KN ++ A++V +L A HR+A+TGTP+ENRL ELW Sbjct: 643 TATRDIDELAEYEWNRVVLDEAQAVKNSLSRAAKAVRRLRAAHRVALTGTPMENRLAELW 702 Query: 671 SIFHFLNPGYLGTYHSFRQRYV-------SGEGGDRLRELHRLVSPFLLRRLKSDPDISK 723 SI FLNPG LG+ FR RY E +RLR R P++LRRLK+DP I Sbjct: 703 SIMDFLNPGLLGSSERFRTRYAIPIERHGHTEPAERLRASTR---PYILRRLKTDPAIID 759 Query: 724 DLPEKLELKQYCTLTETQAALYQGVVNEMLGVIGERSGMARRGLVLSSLTKLKQICDHP- 782 DLPEK+E+KQYC LT QA+LYQ VV +M+ I G+ RRG VL+++ KLKQ+C+HP Sbjct: 760 DLPEKIEIKQYCQLTTEQASLYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPA 819 Query: 783 QLFRGDEGRGQRSEASGKMEVMFEVLDSIAGLGESALIFTQYVAMGELLVSRLARRYGKA 842 QL G+RS GK+ + E+L+ I G+ L FTQ+ ELLV LA R+G+A Sbjct: 820 QLLHDRSPVGRRS---GKVIRLEEILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRA 876 Query: 843 P---LFLHGGVPKRERDEMVHAFQEGEGPAFFVLSLKAGGVGLNLTRANHVLHYDRWWNP 899 +LHGG P++ RDEMV FQ G+GP F+LSLKAGG GLNLT ANHV+H DRWWNP Sbjct: 877 ARDIAYLHGGTPRKRRDEMVARFQSGDGPPIFLLSLKAGGTGLNLTAANHVVHLDRWWNP 936 Query: 900 AVENQATDRAFRIGQHKNVQVHKLICQGTLEERIDELIERKKNLSEQVVGSGENWLTEMS 959 AVENQATDRAFRIGQ + VQV K IC GTLEE+IDE+IE KK L++ VV GE WLTE+S Sbjct: 937 AVENQATDRAFRIGQRRTVQVRKFICTGTLEEKIDEMIEEKKALADLVVTDGEGWLTELS 996 Query: 960 NHELKELIEL 969 +L+E+ L Sbjct: 997 TRDLREVFAL 1006 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 5,545,252,888 Number of extensions: 227982031 Number of successful extensions: 545928 Number of sequences better than 1.0e-05: 4344 Number of HSP's gapped: 529726 Number of HSP's successfully gapped: 5815 Length of query: 975 Length of database: 3,060,696,203 Length adjustment: 146 Effective length of query: 829 Effective length of database: 1,685,228,013 Effective search space: 1397054022777 Effective search space used: 1397054022777 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 136 (57.0 bits)