BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0030.p
         (81 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DEN1.1 B1DEN1_9BACL Putative uncharacterized protein                 93   6e-18
B8I1Q7.1 B8I1Q7_CLOCE Putative uncharacterized protein                 65   1e-09
A1HSS1.1 A1HSS1_9FIRM Putative uncharacterized protein                 61   3e-08
B1DKS1.1 B1DKS1_9BACL Putative uncharacterized protein                 53   7e-06

>B1DEN1.1 B1DEN1_9BACL Putative uncharacterized protein
          Length = 268

 Score = 93.2 bits (230), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 2/83 (2%)

Query: 1   VLGTYSYFIVNTG--ANPVNTQVEISADGTNYFVDTTGDNPLPAGSVDVIVPSRFLKYTR 58
           V GTYSYF+ N G   N    +VEISA+GTN++ D      +  GSVDV+VP RFLKYTR
Sbjct: 186 VFGTYSYFVYNKGPGTNAATARVEISANGTNWYTDVESVTGIAVGSVDVLVPQRFLKYTR 245

Query: 59  LAYQSATPGAASTLNVIFDAQGT 81
           LAY+S T G+A+T++V F+ QGT
Sbjct: 246 LAYRSTTTGSATTVDVYFNGQGT 268


>B8I1Q7.1 B8I1Q7_CLOCE Putative uncharacterized protein
          Length = 534

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 2/80 (2%)

Query: 2   LGTYSYFIVNTG-ANPVNTQVEISADGTNYFVDTTGDNPLPAGSVDVIVPSRFLKYTRLA 60
           L TY +F+ NTG  N V   VE+S +GT++ VD + + P+  G+  +I  ++FL+Y RL 
Sbjct: 456 LNTYQFFVKNTGDTNSVTLVVELSPNGTDWVVD-SDERPITFGAATIITSNKFLRYIRLG 514

Query: 61  YQSATPGAASTLNVIFDAQG 80
           Y+S + GA++T++ IF  QG
Sbjct: 515 YKSTSTGASTTISAIFQGQG 534


>A1HSS1.1 A1HSS1_9FIRM Putative uncharacterized protein
          Length = 281

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 5   YSYFIVNTGANPVNTQVEISADGTNYFVDTTGDNPLPAGSVDVIVPSRFLKYTRLAYQSA 64
           YS FI+NTGA+     ++IS DG  +  D    N LP G +  IVPS   ++ RLAY SA
Sbjct: 206 YSCFIINTGASSATVSLQISPDGVYWLTDGADRNVLP-GEIITIVPSFITRFARLAYHSA 264

Query: 65  TPGAASTLNV 74
           TPG +++L +
Sbjct: 265 TPGKSTSLAI 274


>B1DKS1.1 B1DKS1_9BACL Putative uncharacterized protein
          Length = 162

 Score = 53.1 bits (126), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 6   SYFIVNTGANPVNTQVEISADGTNYFVDTTGDNPLPAGSVDVIVPSRFLKYTRLAYQSAT 65
           SY ++N G N    ++E+  +G ++  D   ++ +  G + ++ PSRFL +TRL+ +S  
Sbjct: 74  SYSVLNRGGNAAVVRLEVGPNGVDFASDY--ESVVEPGGMIIMTPSRFLHFTRLSIRSQQ 131

Query: 66  PGAASTLNVIFDAQGT 81
           PGA++ + V F AQ T
Sbjct: 132 PGASTLIQVYFQAQRT 147


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 519,855,967
Number of extensions: 19664905
Number of successful extensions: 30284
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 30282
Number of HSP's successfully gapped: 4
Length of query: 81
Length of database: 3,060,696,203
Length adjustment: 51
Effective length of query: 30
Effective length of database: 2,580,224,438
Effective search space: 77406733140
Effective search space used: 77406733140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)