BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0020.p (289 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DDZ5.1 B1DDZ5_9BACL Substrate-binding region of ABC-type glyci... 377 e-103 C1STD1.1 C1STD1_9DELT ABC-type proline/glycine betaine transport... 273 1e-71 Q0AAP9.1 Q0AAP9_ALHEH Response regulator receiver protein 272 3e-71 Q1QWA5.1 Q1QWA5_CHRSD Substrate-binding region of ABC-type glyci... 271 6e-71 A8VR11.1 A8VR11_9BACI Binding-protein-dependent transport system... 270 1e-70 >B1DDZ5.1 B1DDZ5_9BACL Substrate-binding region of ABC-type glycine betaine transport system Length = 291 Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/256 (72%), Positives = 208/256 (81%), Gaps = 1/256 (0%) Query: 35 YVAWDSEIASTNVVKEVLESKLGASVEMLQVDAGPMWAGIADGSADAMVAAWLPSTHASY 94 YVAWDSEIASTNVVK VLESKL SVE+LQVDAGPMWAG++DGSADAMVAAWLP+THASY Sbjct: 36 YVAWDSEIASTNVVKYVLESKLDYSVELLQVDAGPMWAGVSDGSADAMVAAWLPTTHASY 95 Query: 95 LEKYGQDMEDLGANLEGTKTGLAVPAYMDIKSIEDLKNAGVAKSLNNQIIGIEPGAGIMT 154 LEKYG +EDLG NLEGTKTGL +P+YM SIEDL N KS++ QIIGIEPGAGIM Sbjct: 96 LEKYGSSVEDLGPNLEGTKTGLVIPSYMKENSIEDLNNEATGKSVDYQIIGIEPGAGIMQ 155 Query: 155 ASQKAIDAYGLS-DYTLLESSSAAMAQELQKAYTDNKPIVVTGWTPHWMFANMDLKYLDD 213 ++ KA+ YGL + L+ESSSAAMA ELQKAY KPIVVTGWTPHWMFANMDLKYL+D Sbjct: 156 STDKALKDYGLDGKWKLIESSSAAMATELQKAYEAKKPIVVTGWTPHWMFANMDLKYLED 215 Query: 214 PKGVYGGAEQIHTMVRKGLKEDMPDVYRFLDQFQWTPEDMAQVMGEIQGGKSPEDAAKAW 273 PKGVYGG E IHT+ RK LK D D Y LDQF WT +DMAQVM IQGG+SPE+AAKAW Sbjct: 216 PKGVYGGEESIHTIARKDLKSDKSDAYALLDQFTWTADDMAQVMVAIQGGQSPEEAAKAW 275 Query: 274 VSEHEDQVNTWIAGIE 289 H DQV+ W+ GI+ Sbjct: 276 ADSHSDQVDKWLEGIK 291 >C1STD1.1 C1STD1_9DELT ABC-type proline/glycine betaine transport system, periplasmic component Length = 281 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 132/251 (52%), Positives = 172/251 (68%), Gaps = 2/251 (0%) Query: 35 YVAWDSEIASTNVVKEVLESKLGASVEMLQVDAGPMWAGIADGSADAMVAAWLPSTHASY 94 YV W SE+ASTNVV+ VL+ K+G E+ V MW A G D +VAAWLP+TH Y Sbjct: 32 YVEWSSEVASTNVVQAVLQEKMGYECEITPVSGAAMWQATATGDVDGLVAAWLPTTHGHY 91 Query: 95 LEKYGQDMEDLGANLEGTKTGLAVPAYMDIKSIEDLKNAGVAKSLNNQIIGIEPGAGIMT 154 LEK ++ DLG NLEGT+ GL VP Y+ I SI+ + A+ + QIIGI+PGAGIM+ Sbjct: 92 LEKVKDEVVDLGPNLEGTRIGLVVPEYVSIDSIDQINE--YAEKFDEQIIGIDPGAGIMS 149 Query: 155 ASQKAIDAYGLSDYTLLESSSAAMAQELQKAYTDNKPIVVTGWTPHWMFANMDLKYLDDP 214 A+++A++ Y + + L+E S A M L+ D + +VVTGWTPHW FA DLKYL+DP Sbjct: 150 ATEEAVEEYNMDNIELMEGSGATMTAVLKNRIEDKEWVVVTGWTPHWKFAKWDLKYLNDP 209 Query: 215 KGVYGGAEQIHTMVRKGLKEDMPDVYRFLDQFQWTPEDMAQVMGEIQGGKSPEDAAKAWV 274 KGVYGG E I T+VR+GLKEDMP+VY FLD F W PEDMA+VM Q G P ++AK W+ Sbjct: 210 KGVYGGEEFISTIVRQGLKEDMPEVYEFLDNFYWAPEDMAEVMVWNQDGMDPYESAKKWI 269 Query: 275 SEHEDQVNTWI 285 SE+ ++V W+ Sbjct: 270 SENPEKVEKWL 280 >Q0AAP9.1 Q0AAP9_ALHEH Response regulator receiver protein Length = 282 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 136/251 (54%), Positives = 174/251 (69%), Gaps = 3/251 (1%) Query: 35 YVAWDSEIASTNVVKEVLESKLGASVEMLQVDAGPMWAGIADGSADAMVAAWLPSTHASY 94 YV WDSE+ASTNVV+ VLE + G V V A MW +A G DAMVAAWLP+THASY Sbjct: 34 YVEWDSEVASTNVVRVVLE-EAGYDVRTTSVSAAAMWQAVASGDQDAMVAAWLPTTHASY 92 Query: 95 LEKYGQDMEDLGANLEGTKTGLAVPAYMDIKSIEDLKNAGVAKSLNNQIIGIEPGAGIMT 154 LE+ + DLG NLEGT+ GL VPAY++I SIE+L + A + +I+GI+PGAGIM+ Sbjct: 93 LEQTRDRVVDLGPNLEGTRIGLVVPAYVEIDSIEELNDH--ADRFDGRIVGIDPGAGIMS 150 Query: 155 ASQKAIDAYGLSDYTLLESSSAAMAQELQKAYTDNKPIVVTGWTPHWMFANMDLKYLDDP 214 ++ AI+ YGL++ L++ SSA MA L+ A + +VVTGWTPHW DLKYL+DP Sbjct: 151 TTETAIEEYGLTNLRLVDGSSATMAAALRDAIRNEDWVVVTGWTPHWKEGRWDLKYLEDP 210 Query: 215 KGVYGGAEQIHTMVRKGLKEDMPDVYRFLDQFQWTPEDMAQVMGEIQGGKSPEDAAKAWV 274 KG+YGG E+IHT+VR+GL+ED P Y LD FQWTPE MA+VM + G P + AK WV Sbjct: 211 KGIYGGEEEIHTIVRQGLEEDHPTAYAILDNFQWTPEHMAEVMVMNEEGGDPYENAKKWV 270 Query: 275 SEHEDQVNTWI 285 E+ D V W+ Sbjct: 271 EENRDLVEQWL 281 >Q1QWA5.1 Q1QWA5_CHRSD Substrate-binding region of ABC-type glycine betaine transport system Length = 294 Score = 271 bits (692), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 141/255 (55%), Positives = 175/255 (68%), Gaps = 5/255 (1%) Query: 35 YVAWDSEIASTNVVKEVLESKLGASVEMLQVDAGPMWAGIADGSADAMVAAWLPSTHASY 94 YV W SE+ASTNVV+ VLE + G +VEM + A MW +A G AD MVAAWLPSTH Y Sbjct: 41 YVEWSSEVASTNVVRAVLEEQ-GYNVEMSSLSAAAMWQAVAYGDADGMVAAWLPSTHEQY 99 Query: 95 LEKYGQDMEDLGANLEGTKTGLAVPAYMDIKSIEDLKNAGVAKSLNNQIIGIEPGAGIMT 154 L + G +EDLGANL GTK GL VP+Y DI SI++L + A +N++I+GI+PGAG+M Sbjct: 100 LNEVGDKVEDLGANLNGTKLGLVVPSYTDISSIDELDDK--ADMVNDEIVGIDPGAGLMN 157 Query: 155 ASQKAIDAYGLSDYTLLESSSAA-MAQELQKAYTDNKPIVVTGWTPHWMFANMDLKYLDD 213 ++KAI+ Y L D L+S S A M L A +++ IVV GWTPHWMFA DLKYL+D Sbjct: 158 LTEKAIEEYDLGDEINLQSGSGATMTAALDSAIKNDEDIVVAGWTPHWMFARWDLKYLED 217 Query: 214 PKGVYGGAEQIHTMVRKGLKEDMPDVYRFLDQFQWTPEDMAQVMGEIQ-GGKSPEDAAKA 272 PK VYGGAE I+T+VR+GLKEDMP+ Y LD F+WTPE M +VM Q G P + AK Sbjct: 218 PKNVYGGAEHINTVVRQGLKEDMPEAYAILDNFEWTPEQMGEVMLMNQEEGSDPYENAKK 277 Query: 273 WVSEHEDQVNTWIAG 287 WV H D V W+ G Sbjct: 278 WVENHPDVVAEWVNG 292 >A8VR11.1 A8VR11_9BACI Binding-protein-dependent transport systems inner membrane component Length = 320 Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 136/255 (53%), Positives = 172/255 (67%), Gaps = 3/255 (1%) Query: 35 YVAWDSEIASTNVVKEVLESKLGASVEMLQVDAGPMWAGIADGSADAMVAAWLPSTHASY 94 YV WDSEIAST+VV VLES+ G V + +D MW +A+G AD MVAAWLP+TH Sbjct: 69 YVEWDSEIASTHVVANVLESQ-GYDVTITPIDNAIMWQSVANGEADGMVAAWLPATHGDL 127 Query: 95 LEKYGQDMEDLGANLEGTKTGLAVPAYMDIKSIEDLKNAGVAKSLNNQIIGIEPGAGIMT 154 +Y D+ DLG NLEG GL VP YM I SI DL L I GIEPGAG++ Sbjct: 128 FAEYEDDLVDLGVNLEGALVGLVVPEYMTIDSIADLDQ--YEDELGGTITGIEPGAGVVQ 185 Query: 155 ASQKAIDAYGLSDYTLLESSSAAMAQELQKAYTDNKPIVVTGWTPHWMFANMDLKYLDDP 214 A++ +++ YGL +++ SSS AMA L +A + +PIVVTGWTPHW F+ DLKYL+DP Sbjct: 186 AAEASVEDYGLDGFSVETSSSGAMATALGEAVGNEEPIVVTGWTPHWKFSAYDLKYLEDP 245 Query: 215 KGVYGGAEQIHTMVRKGLKEDMPDVYRFLDQFQWTPEDMAQVMGEIQGGKSPEDAAKAWV 274 +G +G AE I TMVR+GL+EDMP+ +R LDQF WT EDM +M EIQ G PEDAA WV Sbjct: 246 EGSFGEAEVIQTMVRQGLEEDMPNAFRILDQFFWTTEDMESIMLEIQEGTDPEDAAADWV 305 Query: 275 SEHEDQVNTWIAGIE 289 ++D V+ W+ G+E Sbjct: 306 EANQDVVDGWLEGVE 320 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.129 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,605,841,002 Number of extensions: 64465413 Number of successful extensions: 145151 Number of sequences better than 1.0e-05: 871 Number of HSP's gapped: 143364 Number of HSP's successfully gapped: 917 Length of query: 289 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 155 Effective length of database: 1,798,280,193 Effective search space: 278733429915 Effective search space used: 278733429915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)