BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0018.p (399 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DDZ7.1 B1DDZ7_9BACL Glycine betaine/L-proline ABC transporter,... 587 e-166 B3KE19.1 B3KE19_9BACI Glycine betaine/L-proline ABC transporter,... 561 e-158 C0Z5E2.1 C0Z5E2_BREBN Glycine betaine ABC transporter ATP-bindin... 517 e-145 A4J9F8.1 A4J9F8_DESRM Glycine betaine/L-proline ABC transporter,... 515 e-144 A8MIC6.1 A8MIC6_ALKOO Glycine betaine/L-proline ABC transporter,... 513 e-143 >B1DDZ7.1 B1DDZ7_9BACL Glycine betaine/L-proline ABC transporter, ATPase subunit Length = 399 Score = 587 bits (1514), Expect = e-166, Method: Compositional matrix adjust. Identities = 282/399 (70%), Positives = 340/399 (85%) Query: 1 MAIIEVKQLTKVFGHDAVRALPLLAQGWSKEKIAREAKLTVGVNRADFRIEEGEIFVIMG 60 M+IIE KQLTK+FG +A+ L QGW+KE+I +E ++TVGVN+A F IE G+IFVIMG Sbjct: 1 MSIIEAKQLTKIFGSHPEQAMQFLKQGWTKERILKETRMTVGVNQASFTIEAGQIFVIMG 60 Query: 61 LSGSGKSTLVRLLNRLIEPTGGQVLFRDKDVVKMNPEQLRQFRRKNIGMVFQKFALFPHR 120 LSGSGKSTL+RLLNRLIEPT GQ+LF +D+V+M+ ++LRQFRRK +GMVFQKFALFPHR Sbjct: 61 LSGSGKSTLIRLLNRLIEPTSGQLLFEGRDIVQMSAKELRQFRRKKMGMVFQKFALFPHR 120 Query: 121 TVLANAEYGLEVQGVEKKERTRLAMQALELVGLKGWEHHHPDQLSGGMQQRVGLARGLAN 180 TVL N EYGLE+QG+EK+ R ++A QAL+LVGL GWE+ +PDQLSGGMQQRVGLARGLAN Sbjct: 121 TVLQNVEYGLEIQGIEKQSRRQMAEQALQLVGLGGWENSYPDQLSGGMQQRVGLARGLAN 180 Query: 181 DPDILLMDEAFSALDPLIRKDMQQELLELQSKMKKTIVFITHDLDEALRIGDRIALMKDG 240 DPDILLMDEAFSALDPLIRKDMQ ELL+LQS MKKTI+FITHDLDEALRIGD+IALMKDG Sbjct: 181 DPDILLMDEAFSALDPLIRKDMQDELLQLQSTMKKTIIFITHDLDEALRIGDKIALMKDG 240 Query: 241 VIVQIGTPEEILIQPANKYVERFVEDVDLSKVLTAAHVMRQPEMIRPERGPRVALQLMRD 300 VIVQIGTP+EILI+PA YVE+F+EDVDLSKVLTAAHVMR+P I ERGPRVALQLM++ Sbjct: 241 VIVQIGTPDEILIKPATPYVEKFIEDVDLSKVLTAAHVMRKPATITLERGPRVALQLMKE 300 Query: 301 SGVSSLYVADKEMKLQGVVTAEDAAQALKENRPILEVMRREIPRVSPDTLLNDLFELMSE 360 GVSSLYV DK KL GV+TAE A+ ALKEN I +++ +E+P + T +N+LFE M+ Sbjct: 301 QGVSSLYVTDKGKKLLGVITAELASAALKENLSIGDILIKEVPTIDSATPINELFEPMAA 360 Query: 361 THLPVAVVDEADKLKGIVIKGAVLSALAGNAVPEGEGMR 399 + +P+AV D+ ++L GIVI+GAV +ALAGNA+PE G R Sbjct: 361 SSIPLAVTDDTNRLLGIVIRGAVFAALAGNAIPEAGGAR 399 >B3KE19.1 B3KE19_9BACI Glycine betaine/L-proline ABC transporter, ATPase subunit Length = 400 Score = 561 bits (1446), Expect = e-158, Method: Compositional matrix adjust. Identities = 274/394 (69%), Positives = 327/394 (82%) Query: 1 MAIIEVKQLTKVFGHDAVRALPLLAQGWSKEKIAREAKLTVGVNRADFRIEEGEIFVIMG 60 MAI++V +++K+FG + + L LL QGWSK +IA+E +TVGVNR F I+EGEIFVIMG Sbjct: 1 MAILQVNKVSKLFGANPEQGLQLLEQGWSKARIAKEKNITVGVNRVSFDIQEGEIFVIMG 60 Query: 61 LSGSGKSTLVRLLNRLIEPTGGQVLFRDKDVVKMNPEQLRQFRRKNIGMVFQKFALFPHR 120 LSGSGKSTLVRLLNRLIEPT G++L KD+ KMN EQLR+ RRK I MVFQKFALFPHR Sbjct: 61 LSGSGKSTLVRLLNRLIEPTSGEILIHGKDLRKMNKEQLREVRRKKISMVFQKFALFPHR 120 Query: 121 TVLANAEYGLEVQGVEKKERTRLAMQALELVGLKGWEHHHPDQLSGGMQQRVGLARGLAN 180 TV+ N EYGLE+Q V+K +R AM++LELVGLKGWE PDQLSGGMQQRVGLAR LAN Sbjct: 121 TVVDNVEYGLEIQKVDKSKRREAAMKSLELVGLKGWEEKMPDQLSGGMQQRVGLARALAN 180 Query: 181 DPDILLMDEAFSALDPLIRKDMQQELLELQSKMKKTIVFITHDLDEALRIGDRIALMKDG 240 DP+ILLMDEAFSALDPLIR+DMQ EL+ELQ KMKKTIVFITHDLDEALRIGDRIALMKDG Sbjct: 181 DPEILLMDEAFSALDPLIRRDMQDELIELQDKMKKTIVFITHDLDEALRIGDRIALMKDG 240 Query: 241 VIVQIGTPEEILIQPANKYVERFVEDVDLSKVLTAAHVMRQPEMIRPERGPRVALQLMRD 300 IVQIGTPEEIL QPAN YVERFVEDVDLSKVLTA+ VMR+PE I +RGPRVAL+LMR+ Sbjct: 241 SIVQIGTPEEILTQPANDYVERFVEDVDLSKVLTASRVMRRPETITMDRGPRVALELMRE 300 Query: 301 SGVSSLYVADKEMKLQGVVTAEDAAQALKENRPILEVMRREIPRVSPDTLLNDLFELMSE 360 G+S+L+V D+ KL GV+TAEDA+ A+K NR + +++ + P V PDTLLN+LFE+ S Sbjct: 301 RGISNLFVIDRSKKLLGVITAEDASDAMKNNRKLADILITDGPSVGPDTLLNELFEITSM 360 Query: 361 THLPVAVVDEADKLKGIVIKGAVLSALAGNAVPE 394 + +P+AVVD+ +L G++++GAVL ALAG E Sbjct: 361 SKVPLAVVDDTGRLMGVIVRGAVLGALAGETKSE 394 >C0Z5E2.1 C0Z5E2_BREBN Glycine betaine ABC transporter ATP-binding protein EC=3.6.3.32 Length = 408 Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust. Identities = 263/398 (66%), Positives = 315/398 (79%), Gaps = 5/398 (1%) Query: 1 MAIIEVKQLTKVFGHDAVRALPLLAQGWSKEKIAREAKLTVGVNRADFRIEEGEIFVIMG 60 M I+V+ LTK+FG RAL + QG +K++I +E LT+GVN+A F + GEIFVIMG Sbjct: 1 MPKIKVENLTKIFGRQPQRALSQVKQGKTKQEILKETGLTLGVNQASFEVHAGEIFVIMG 60 Query: 61 LSGSGKSTLVRLLNRLIEPTGGQVLFRDKDVVKMNPEQLRQFRRKNIGMVFQKFALFPHR 120 LSGSGKSTLVRLLNRLIEPT G++L D+V MN EQL++ RRK +GMVFQKFALFPHR Sbjct: 61 LSGSGKSTLVRLLNRLIEPTEGKILIDGTDIVSMNTEQLQEVRRKKLGMVFQKFALFPHR 120 Query: 121 TVLANAEYGLEVQGVEKKERTRLAMQALELVGLKGWEHHHPDQLSGGMQQRVGLARGLAN 180 TVL NAEYGLE+QG+ K ER A ++L LVGL GWE +PDQLSGGMQQRVGLAR LAN Sbjct: 121 TVLENAEYGLEIQGMPKAEREAKAKKSLTLVGLGGWEASYPDQLSGGMQQRVGLARALAN 180 Query: 181 DPDILLMDEAFSALDPLIRKDMQQELLELQSKMKKTIVFITHDLDEALRIGDRIALMKDG 240 +PD+LLMDEAFSALDPLIRKDMQ ELLELQS M+KTI+FITHDLDEAL+IGDRIALMKDG Sbjct: 181 EPDVLLMDEAFSALDPLIRKDMQDELLELQSTMQKTIIFITHDLDEALKIGDRIALMKDG 240 Query: 241 VIVQIGTPEEILIQPANKYVERFVEDVDLSKVLTAAHVMRQPEMIRPERGPRVALQLMRD 300 IVQIG+PEEI+ PAN+YVERFVEDVD SKVL+A VM++ E I +RGPRVALQ+MR+ Sbjct: 241 AIVQIGSPEEIMTNPANEYVERFVEDVDRSKVLSAEKVMKRAETITLDRGPRVALQMMRE 300 Query: 301 SGVSSLYVADKEMKLQGVVTAEDAAQALKENRPILE-VMRREIPRVSPDTLLNDLFELMS 359 GVSSLYV DK L GV+TA DA KE LE V+R E+P V P TLLN++F+L++ Sbjct: 301 RGVSSLYVVDKRKTLLGVLTA-DAVNGAKEAGQSLESVLRTEVPTVGPQTLLNEMFDLVA 359 Query: 360 ETHLPVAVVDEADKLKGIVIKGAVLSALAGNA---VPE 394 + +PVAV+ E ++L G+++KGAVL LAG VPE Sbjct: 360 FSDIPVAVIGEQNRLLGVIVKGAVLGGLAGKVNQQVPE 397 >A4J9F8.1 A4J9F8_DESRM Glycine betaine/L-proline ABC transporter, ATPase subunit Length = 398 Score = 515 bits (1326), Expect = e-144, Method: Compositional matrix adjust. Identities = 254/389 (65%), Positives = 314/389 (80%) Query: 1 MAIIEVKQLTKVFGHDAVRALPLLAQGWSKEKIAREAKLTVGVNRADFRIEEGEIFVIMG 60 M I+V+ L K+FG +A+ LL +G +K++I +E LTVGVN+A+F++ GEIFVIMG Sbjct: 1 MTKIKVENLIKIFGPKPNKAIELLQKGKTKQEILQETGLTVGVNQANFQVYAGEIFVIMG 60 Query: 61 LSGSGKSTLVRLLNRLIEPTGGQVLFRDKDVVKMNPEQLRQFRRKNIGMVFQKFALFPHR 120 LSGSGKSTLVRLLNRLIEPT G++ +D+ M+ EQLR+ RRK + MVFQ+FALFPHR Sbjct: 61 LSGSGKSTLVRLLNRLIEPTSGKIEIDGEDIATMSKEQLREVRRKKLSMVFQRFALFPHR 120 Query: 121 TVLANAEYGLEVQGVEKKERTRLAMQALELVGLKGWEHHHPDQLSGGMQQRVGLARGLAN 180 TV N EYGLEVQGV +ER A+Q+L LVGL GWE+ +P QLSGGMQQRVGLAR LAN Sbjct: 121 TVQQNVEYGLEVQGVSPEERREKAVQSLALVGLAGWENSYPGQLSGGMQQRVGLARALAN 180 Query: 181 DPDILLMDEAFSALDPLIRKDMQQELLELQSKMKKTIVFITHDLDEALRIGDRIALMKDG 240 DPD+LLMDEAFSALDPLIRKDMQ ELLELQS M KTI+FITHDLDEAL+IGDRIALMKDG Sbjct: 181 DPDVLLMDEAFSALDPLIRKDMQDELLELQSTMHKTIIFITHDLDEALKIGDRIALMKDG 240 Query: 241 VIVQIGTPEEILIQPANKYVERFVEDVDLSKVLTAAHVMRQPEMIRPERGPRVALQLMRD 300 IVQIGTPEEIL PAN+YVE+FVEDVD+SKVLTA HVM++PE I +GPRVALQLM+D Sbjct: 241 KIVQIGTPEEILTNPANEYVEKFVEDVDMSKVLTAEHVMKRPETITLNKGPRVALQLMKD 300 Query: 301 SGVSSLYVADKEMKLQGVVTAEDAAQALKENRPILEVMRREIPRVSPDTLLNDLFELMSE 360 SGVSSLYV D + L GVV A+ ++A +E + EVM ++P V+PDT L+DLF++++ Sbjct: 301 SGVSSLYVVDSKKTLLGVVKADAVSKAKQEGLTLEEVMETDVPVVAPDTRLHDLFDIIAF 360 Query: 361 THLPVAVVDEADKLKGIVIKGAVLSALAG 389 + +P+AVV+E +L G++++GAVL LAG Sbjct: 361 SPVPLAVVNEQRRLSGVIVRGAVLGGLAG 389 >A8MIC6.1 A8MIC6_ALKOO Glycine betaine/L-proline ABC transporter, ATPase subunit Length = 404 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 259/396 (65%), Positives = 319/396 (80%), Gaps = 3/396 (0%) Query: 1 MAIIEVKQLTKVFGHDAVRALPLLAQGWSKEKIAREAKLTVGVNRADFRIEEGEIFVIMG 60 M IEVK LTKVFG + + + LL +G +KE+I +E +TVGVNRA F + GEIFVIMG Sbjct: 1 MIKIEVKDLTKVFGKNPSQGIKLLQEGKTKEQILKETGMTVGVNRASFEVYTGEIFVIMG 60 Query: 61 LSGSGKSTLVRLLNRLIEPTGGQVLFRDKDVVKMNPEQLRQFRRKNIGMVFQKFALFPHR 120 LSGSGKSTLVRL+NRLIEP+ G V +D+ KM+ EQLR+ RRK +GMVFQKF LFPHR Sbjct: 61 LSGSGKSTLVRLINRLIEPSAGSVFVDGEDLAKMDKEQLRKTRRKKLGMVFQKFGLFPHR 120 Query: 121 TVLANAEYGLEVQGVEKKERTRLAMQALELVGLKGWEHHHPDQLSGGMQQRVGLARGLAN 180 T+L N YGLEVQG++K E AM++L+LVGL+G+E +P QLSGGMQQRVGLAR LAN Sbjct: 121 TILENVGYGLEVQGMQKDEIRSRAMESLKLVGLEGYEDQYPSQLSGGMQQRVGLARALAN 180 Query: 181 DPDILLMDEAFSALDPLIRKDMQQELLELQSKMKKTIVFITHDLDEALRIGDRIALMKDG 240 PDILLMDEAFSALDPLIRK+MQ EL+ELQS M+KTI+FITHDLDEAL+IGDRIALMKDG Sbjct: 181 KPDILLMDEAFSALDPLIRKEMQDELIELQSTMQKTIIFITHDLDEALKIGDRIALMKDG 240 Query: 241 VIVQIGTPEEILIQPANKYVERFVEDVDLSKVLTAAHVMRQPEMIRPER-GPRVALQLMR 299 VIVQIGTPEEI+ PAN YV++FVEDVD SKV +A HVM++PE I E+ GPRVALQ M+ Sbjct: 241 VIVQIGTPEEIMTNPANDYVKKFVEDVDRSKVFSAQHVMKRPETIDVEKHGPRVALQNMK 300 Query: 300 DSGVSSLYVADKEMKLQGVVTAEDAAQALKE-NRPILEVMRREIPRVSPDTLLNDLFELM 358 +G+SS+YV +K +L GVVTA+ A++A+K+ N+ I +VM +E+P V PD LNDLFE++ Sbjct: 301 QAGISSIYVINKNKELLGVVTADAASKAVKDGNKNIYDVMEKEVPIVPPDLSLNDLFEVI 360 Query: 359 SETHLPVAVVDEADKLKGIVIKGAVLSALAGNAVPE 394 + +PVAVV E LKGI+++GAVL+ALAGN V E Sbjct: 361 HNSPVPVAVV-ENKILKGIIVRGAVLAALAGNEVNE 395 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,213,512,712 Number of extensions: 89476939 Number of successful extensions: 644028 Number of sequences better than 1.0e-05: 90919 Number of HSP's gapped: 519105 Number of HSP's successfully gapped: 97474 Length of query: 399 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 261 Effective length of database: 1,760,596,133 Effective search space: 459515590713 Effective search space used: 459515590713 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)