BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0017.p (185 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DDZ8.1 B1DDZ8_9BACL Transcriptional regulator 263 5e-69 B3KE18.1 B3KE18_9BACI Transcriptional regulator 200 5e-50 A4J9F9.1 A4J9F9_DESRM Transcriptional regulator 198 2e-49 C0Z5E3.1 C0Z5E3_BREBN Putative uncharacterized protein 182 2e-44 Q2BCS1.1 Q2BCS1_9BACI Transcriptional regulator 174 4e-42 >B1DDZ8.1 B1DDZ8_9BACL Transcriptional regulator Length = 186 Score = 263 bits (672), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 118/179 (65%), Positives = 149/179 (83%) Query: 6 GLAPEQVERISKARERVIDSIGKNMDLYGITLSIGHLYGYMYFNQGPVTLDELSRTMGMS 65 GL PEQ + +R+RVIDSIGKNMDLYGITLSIGHLYGYMYF P+TLD++S+ MGMS Sbjct: 7 GLTPEQSRSLHVSRQRVIDSIGKNMDLYGITLSIGHLYGYMYFQNDPITLDQMSQQMGMS 66 Query: 66 KTSMSTGVRTLLDLKMIDKVWGKGTRKDLFEVVPDWHQNFSDYFSIKWRKAVEGNMSALS 125 KTSMSTG+RTL+DLKMIDKVWGKG+RKD +EVVPDW+QNF+D+FSIKWRKAVE NM++L Sbjct: 67 KTSMSTGMRTLMDLKMIDKVWGKGSRKDFYEVVPDWYQNFTDFFSIKWRKAVESNMASLQ 126 Query: 126 KSLNEIRQMKSDYADEPGVEQLLNTDEVKIEEAIKYYRWLLKLIEALETGKIFELIPKE 184 KSL EI +++ D ++++ + DE KI EA+ YYRWL +LI++ E+G+IF+ IPKE Sbjct: 127 KSLKEIHALQTSDPDNSTLQEITSVDEQKINEALNYYRWLHRLIDSFESGEIFDFIPKE 185 >B3KE18.1 B3KE18_9BACI Transcriptional regulator Length = 189 Score = 200 bits (508), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 94/181 (51%), Positives = 129/181 (71%) Query: 4 LVGLAPEQVERISKARERVIDSIGKNMDLYGITLSIGHLYGYMYFNQGPVTLDELSRTMG 63 L L E+ + K R+RVI++IG+NMDLYGI S GHLYG +YF P+ LDE+ + M Sbjct: 3 LYHLDDERQAAVQKIRKRVIENIGRNMDLYGIPHSTGHLYGLLYFADKPMNLDEMGQEMK 62 Query: 64 MSKTSMSTGVRTLLDLKMIDKVWGKGTRKDLFEVVPDWHQNFSDYFSIKWRKAVEGNMSA 123 MSKTSMSTGVRTLLD KM++KVW KG+RKDL+EV DW+Q F D+F IKWRK+VE N+ Sbjct: 63 MSKTSMSTGVRTLLDYKMVNKVWEKGSRKDLYEVEYDWYQTFFDFFDIKWRKSVESNILV 122 Query: 124 LSKSLNEIRQMKSDYADEPGVEQLLNTDEVKIEEAIKYYRWLLKLIEALETGKIFELIPK 183 L K+L+E +++ + D+ + +L D+ K+ EA+ YY+WL +LI+ G+IF +PK Sbjct: 123 LRKALDETEKLRKAHEDDEELVAVLQEDQAKMREAVAYYKWLERLIDTFVDGEIFNYVPK 182 Query: 184 E 184 E Sbjct: 183 E 183 >A4J9F9.1 A4J9F9_DESRM Transcriptional regulator Length = 189 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 94/175 (53%), Positives = 131/175 (74%), Gaps = 2/175 (1%) Query: 10 EQVERISKARERVIDSIGKNMDLYGITLSIGHLYGYMYFNQGPVTLDELSRTMGMSKTSM 69 EQ+ I KAR RVIDS+ +N+DLYGIT+SIGHLYG + F P+TLDE+ +GMSKTSM Sbjct: 13 EQI--IYKARHRVIDSLARNIDLYGITMSIGHLYGTLLFQDKPMTLDEMGEALGMSKTSM 70 Query: 70 STGVRTLLDLKMIDKVWGKGTRKDLFEVVPDWHQNFSDYFSIKWRKAVEGNMSALSKSLN 129 STGVRTLLDL M++KVW KGTRKD +E+ DW+QNF DYFSIKWRK ++ N+ +L KSL Sbjct: 71 STGVRTLLDLNMVNKVWMKGTRKDHYEIEQDWYQNFIDYFSIKWRKGIDDNIQSLRKSLQ 130 Query: 130 EIRQMKSDYADEPGVEQLLNTDEVKIEEAIKYYRWLLKLIEALETGKIFELIPKE 184 E++ + S +++++ D KI+ +++YY WL +LI+ E+ +IF+ +PK+ Sbjct: 131 ELKTLLSKDDLPTPLQEMVQADIEKIKNSLEYYDWLNRLIDTFESHEIFKYVPKK 185 >C0Z5E3.1 C0Z5E3_BREBN Putative uncharacterized protein Length = 182 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 86/170 (50%), Positives = 120/170 (70%) Query: 15 ISKARERVIDSIGKNMDLYGITLSIGHLYGYMYFNQGPVTLDELSRTMGMSKTSMSTGVR 74 + KA+ERVI+++ +NMDLYGIT+S G LYG + F +TLDE+ +GMSKTSMSTGVR Sbjct: 9 LEKAQERVIETLARNMDLYGITMSTGLLYGTLLFQDKSMTLDEMGEALGMSKTSMSTGVR 68 Query: 75 TLLDLKMIDKVWGKGTRKDLFEVVPDWHQNFSDYFSIKWRKAVEGNMSALSKSLNEIRQM 134 TL+DL M++K+W KGTRKD +EV DW+QNF D FS+KWR A E N AL KSL E+R + Sbjct: 69 TLMDLNMVEKIWKKGTRKDHYEVNLDWYQNFIDLFSVKWRHACEHNAHALKKSLLELRAL 128 Query: 135 KSDYADEPGVEQLLNTDEVKIEEAIKYYRWLLKLIEALETGKIFELIPKE 184 + V + ++ +IE ++YY WL +LI++ E+ IF+ +PK+ Sbjct: 129 QQSEELSEEVSERVDLSIKRIENGLEYYLWLSRLIDSFESHDIFQFVPKK 178 >Q2BCS1.1 Q2BCS1_9BACI Transcriptional regulator Length = 181 Score = 174 bits (440), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 86/172 (50%), Positives = 120/172 (69%), Gaps = 1/172 (0%) Query: 13 ERISKARERVIDSIGKNMDLYGITLSIGHLYGYMYFNQGPVTLDELSRTMGMSKTSMSTG 72 E +++ARERVI+S+ +NM LYG+ SIG +YG +YF P+TLDEL + MSKTSMSTG Sbjct: 5 ELVAQARERVIESVARNMHLYGVPASIGRIYGTLYFENKPMTLDELKEELEMSKTSMSTG 64 Query: 73 VRTLLDLKMIDKVWGKGTRKDLFEVVPDWHQNFSDYFSIKWRKAVEGNMSALSKSLNEIR 132 VRTLL+L M++KVW KG RKDL++V DW+QNF D F +WRK + N+ A +SL ++ Sbjct: 65 VRTLLELNMVEKVWRKGERKDLYQVKGDWYQNFIDRFCTQWRKGTQMNLDASLRSLKDLE 124 Query: 133 QMKSDYADEPGVEQLLNTDEVKIEEAIKYYRWLLKLIEALETGKIFELIPKE 184 ++ S D+ V++ N + KI AI+YY WL K+I+ E+ +IFEL E Sbjct: 125 EVLSHTEDDETVKKAENHLQ-KITYAIEYYTWLNKVIDLFESREIFELTKSE 175 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,077,596,179 Number of extensions: 40787215 Number of successful extensions: 133361 Number of sequences better than 1.0e-05: 69 Number of HSP's gapped: 133298 Number of HSP's successfully gapped: 69 Length of query: 185 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 58 Effective length of database: 1,864,227,298 Effective search space: 108125183284 Effective search space used: 108125183284 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)