BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0013.p (336 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9KET5.1 FABH2_BACHD 3-oxoacyl-[acyl-carrier-protein] synthase 3... 426 e-117 C0ZAJ5.1 C0ZAJ5_BREBN 3-oxoacyl-[acyl-carrier-protein] synthase ... 415 e-114 A7GPQ9.1 A7GPQ9_BACCN 3-oxoacyl-(Acyl-carrier-protein) synthase ... 410 e-112 B3KA44.1 B3KA44_9BACI 3-oxoacyl-(Acyl-carrier-protein) synthase ... 389 e-106 Q4V149.1 Q4V149_BACCZ 3-oxoacyl-[acyl-carrier-protein] synthase ... 377 e-102 >Q9KET5.1 FABH2_BACHD 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 EC=2.3.1.180 Length = 332 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 201/326 (61%), Positives = 257/326 (78%), Gaps = 1/326 (0%) Query: 4 AKITAIGAYVPARRLTNSDLEQMVDTNDEWIVQRTGIRERRISREDEYTSDLCAAAVLDL 63 A+ITAIG+YVP RRLTN DLE+MVDTNDEWIV+RTGIRERRI+ +DE+TSD+ AV DL Sbjct: 6 ARITAIGSYVPERRLTNDDLEKMVDTNDEWIVKRTGIRERRIAADDEFTSDIGYKAVQDL 65 Query: 64 MKRYGKSMHDVDMILVATSTPDFPFPSVASILQNRLGIPATAGAIDMSAACAGFVYALHT 123 + RY KS+ DVDMI+V T TPDF PS AS++Q +LGI T GAID++AACAGF Y LH Sbjct: 66 IARYEKSVDDVDMIIVCTFTPDFKTPSAASLIQAKLGIQNT-GAIDLNAACAGFTYGLHM 124 Query: 124 AHAYVASGLHRKVLVLGADALSKITDYTDRSTCILFGDGAGAVLVESGEQLDGFAGFHLG 183 A+ ++SGLHRK+LV+GA+ +SK+TDYTDR+TCILFGDGAGAVLVE E F F+LG Sbjct: 125 ANGLISSGLHRKILVIGAETISKVTDYTDRTTCILFGDGAGAVLVEYDENEPSFVSFNLG 184 Query: 184 SDGSGAHHVYRTGLSHRVNEVELSDTGKLVQNGREVFRWAVRTVPQGVQQVLNNAGIGLD 243 S+G A+ +Y TGL+ ++N EL +TG LVQ+GREV++WAV TVP G++ VL A + + Sbjct: 185 SEGERANKLYCTGLAEQMNGEELVNTGNLVQSGREVYKWAVNTVPAGMKAVLEKAAMKRN 244 Query: 244 QVDWFIPHSANLRMIEPICERLNYPFEQALYSLEYFGNTSAASIPLALDLGVREGKVVNG 303 ++DWF+PHSANLRMIE IC++ P EQ LYSL +GNTS+A+IPLALD+GVREGK+ +G Sbjct: 245 EIDWFVPHSANLRMIESICDKSGIPLEQTLYSLVQYGNTSSATIPLALDIGVREGKLKHG 304 Query: 304 QQILLYGFGAGLTQAGQLVKLELAPE 329 +LLYGFG GL AG +++ + E Sbjct: 305 DNVLLYGFGGGLAHAGLILRWTVPTE 330 >C0ZAJ5.1 C0ZAJ5_BREBN 3-oxoacyl-[acyl-carrier-protein] synthase III EC=2.3.1.41 Length = 331 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/306 (63%), Positives = 247/306 (80%), Gaps = 1/306 (0%) Query: 4 AKITAIGAYVPARRLTNSDLEQMVDTNDEWIVQRTGIRERRISREDEYTSDLCAAAVLDL 63 ++ITAIG YVP+R LTN+D+E++VDT++EWI+QRTGI ERR++REDE+TSDL AA+ D+ Sbjct: 10 SRITAIGTYVPSRVLTNTDMEKLVDTSNEWILQRTGIHERRMAREDEFTSDLAIAAIHDM 69 Query: 64 MKRYGKSMHDVDMILVATSTPDFPFPSVASILQNRLGIPATAGAIDMSAACAGFVYALHT 123 + YGK + DVDMILVATSTPD+PFPSVAS +Q + AGA+D+SA CAGF YALHT Sbjct: 70 IANYGKDVRDVDMILVATSTPDYPFPSVASQIQAHFQVEQ-AGAMDLSATCAGFTYALHT 128 Query: 124 AHAYVASGLHRKVLVLGADALSKITDYTDRSTCILFGDGAGAVLVESGEQLDGFAGFHLG 183 A+A ++SGLHRKVLV+GA+ L+K+TDYTDR+TCILFGDGAGAVLVE GF +LG Sbjct: 129 ANALISSGLHRKVLVVGAETLTKVTDYTDRTTCILFGDGAGAVLVEQDSTAPGFLSVYLG 188 Query: 184 SDGSGAHHVYRTGLSHRVNEVELSDTGKLVQNGREVFRWAVRTVPQGVQQVLNNAGIGLD 243 S G G HVYR GLS R++ ELS G +VQNGREV++WAV TVP+G+ +V+N AG L+ Sbjct: 189 SKGDGGIHVYRAGLSTRMDGRELSGNGCMVQNGREVYKWAVTTVPKGMLEVVNRAGKTLE 248 Query: 244 QVDWFIPHSANLRMIEPICERLNYPFEQALYSLEYFGNTSAASIPLALDLGVREGKVVNG 303 VDWFIPHSANLRMIE ICE+ +P ++ LYSL ++GNTS+A+IPL+L LG++EGKV G Sbjct: 249 DVDWFIPHSANLRMIESICEKSQFPLDKTLYSLTHYGNTSSATIPLSLALGIKEGKVKAG 308 Query: 304 QQILLY 309 IL+Y Sbjct: 309 DTILVY 314 >A7GPQ9.1 A7GPQ9_BACCN 3-oxoacyl-(Acyl-carrier-protein) synthase III EC=2.3.1.41 Length = 332 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 185/322 (57%), Positives = 252/322 (78%), Gaps = 1/322 (0%) Query: 1 LKGAKITAIGAYVPARRLTNSDLEQMVDTNDEWIVQRTGIRERRISREDEYTSDLCAAAV 60 L A+ITA+G+YVP + L N DLE+MVDTN+EWIV+RTGI+ERRI+ ++T++L AV Sbjct: 8 LSKARITALGSYVPEKILNNDDLEKMVDTNNEWIVRRTGIKERRIASPTQFTTNLGIKAV 67 Query: 61 LDLMKRYGKSMHDVDMILVATSTPDFPFPSVASILQNRLGIPATAGAIDMSAACAGFVYA 120 +LM RY KS+ DVD+ILVATSTPD+ FPSVAS +Q +L IP GA+D++AACAGFVY Sbjct: 68 ENLMNRYNKSIEDVDLILVATSTPDYAFPSVASQIQAQLRIP-NCGALDLNAACAGFVYG 126 Query: 121 LHTAHAYVASGLHRKVLVLGADALSKITDYTDRSTCILFGDGAGAVLVESGEQLDGFAGF 180 L A++ + S +++K+LV+GA+ LSKITDYTDRS CILFGDGAG LVE E F Sbjct: 127 LQLANSLITSKMNKKILVIGAETLSKITDYTDRSNCILFGDGAGVALVEYDENNPSFLSS 186 Query: 181 HLGSDGSGAHHVYRTGLSHRVNEVELSDTGKLVQNGREVFRWAVRTVPQGVQQVLNNAGI 240 H+GS G G H+Y+ GLS ++++++L+DT LVQNGRE+++WAV+ VP GV+ ++N G+ Sbjct: 187 HMGSYGDGGIHLYKVGLSKKMSDIDLTDTPYLVQNGREIYKWAVKNVPIGVKTLINKVGM 246 Query: 241 GLDQVDWFIPHSANLRMIEPICERLNYPFEQALYSLEYFGNTSAASIPLALDLGVREGKV 300 L +++WF+PHSANLRMIE +C+++ YP E+ L S EYFGNTSAASIPLALDL ++E K+ Sbjct: 247 DLHEINWFVPHSANLRMIESMCDKMEYPLEKTLTSAEYFGNTSAASIPLALDLAIKEEKL 306 Query: 301 VNGQQILLYGFGAGLTQAGQLV 322 +N Q+++LYGFG GL AG ++ Sbjct: 307 INNQKLVLYGFGGGLVHAGLII 328 >B3KA44.1 B3KA44_9BACI 3-oxoacyl-(Acyl-carrier-protein) synthase III EC=2.3.1.41 Length = 327 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 187/320 (58%), Positives = 245/320 (76%), Gaps = 2/320 (0%) Query: 4 AKITAIGAYVPARRLTNSDLEQMVDTNDEWIVQRTGIRERRISREDEYTSDLCAAAVLDL 63 ++ITAIG YVP R LTN+DLE+MV+T+DEWIVQRTG+RERRI+ D+Y SDL AV D+ Sbjct: 7 SRITAIGTYVPERILTNADLEKMVETSDEWIVQRTGMRERRIAAPDQYVSDLAIKAVEDM 66 Query: 64 MKRYGKSMHDVDMILVATSTPDFPFPSVASILQNRLGIPATAGAIDMSAACAGFVYALHT 123 ++RYG ++ D DMILVATSTP++ FPS AS +Q++LGI +T GA+D++AACAGFVYAL Sbjct: 67 VERYGVTVQDADMILVATSTPEYSFPSTASRVQSKLGIAST-GALDLNAACAGFVYALQM 125 Query: 124 AHAYVASGLHRKVLVLGADALSKITDYTDRSTCILFGDGAGAVLVESGEQLDGFAGFHLG 183 A ++ G +RK+LV+GA+ LSKITDYTDR+TC+LFGDGAGAVL+E E G G Sbjct: 126 ADGLISGGAYRKILVIGAETLSKITDYTDRTTCVLFGDGAGAVLLERDESSAGIIASVSG 185 Query: 184 SDGSGAHHVYRTGLSHRVNEVELSDTGKLVQNGREVFRWAVRTVPQGVQQVLNNAGIGLD 243 + G G H+Y+T LS +++ EL +G LVQNGRE+++WA+R +P GV+ +L+ G+ D Sbjct: 186 TFGEGGIHLYKTALSEQMDGTELK-SGCLVQNGREIYKWAIRNIPDGVRALLSKGGMTAD 244 Query: 244 QVDWFIPHSANLRMIEPICERLNYPFEQALYSLEYFGNTSAASIPLALDLGVREGKVVNG 303 +VDWF+PHSANLRMIE I ER + ++ L S+EY GNTSAASIPLAL L V EG++ G Sbjct: 245 EVDWFVPHSANLRMIEAINERGPFTMDRTLTSVEYRGNTSAASIPLALQLAVDEGRLKAG 304 Query: 304 QQILLYGFGAGLTQAGQLVK 323 LLYGFG G+T AG +VK Sbjct: 305 DHALLYGFGGGMTYAGSIVK 324 >Q4V149.1 Q4V149_BACCZ 3-oxoacyl-[acyl-carrier-protein] synthase III EC=2.3.1.41 Length = 338 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 185/333 (55%), Positives = 244/333 (73%), Gaps = 1/333 (0%) Query: 4 AKITAIGAYVPARRLTNSDLEQMVDTNDEWIVQRTGIRERRISREDEYTSDLCAAAVLDL 63 A+ITAIG YVP ++LTN DLE++VDTND WIVQRTG++ERRI+ ++EY S L A+ +L Sbjct: 5 ARITAIGTYVPEKKLTNDDLEKLVDTNDAWIVQRTGMKERRITGDNEYASTLAFKAIENL 64 Query: 64 MKRYGKSMHDVDMILVATSTPDFPFPSVASILQNRLGIPATAGAIDMSAACAGFVYALHT 123 ++RY KS+ DVD ILV+T+TPD+ FPSVA +Q I T GA+D +A CAGF Y LH Sbjct: 65 VERYHKSLVDVDCILVSTTTPDYTFPSVACQIQEYFNIQHT-GAVDFNATCAGFTYGLHL 123 Query: 124 AHAYVASGLHRKVLVLGADALSKITDYTDRSTCILFGDGAGAVLVESGEQLDGFAGFHLG 183 A+ + SGLHRK+L++ + LSKITDYTDR+TCILFGDGA AVLVE E+ F H+G Sbjct: 124 ANGLITSGLHRKILIVTTETLSKITDYTDRTTCILFGDGAAAVLVEKDEEESSFIATHIG 183 Query: 184 SDGSGAHHVYRTGLSHRVNEVELSDTGKLVQNGREVFRWAVRTVPQGVQQVLNNAGIGLD 243 ++G G HVYR LS + L GK+VQNGREV++WA RT+P G++++L A + L+ Sbjct: 184 TNGEGGMHVYRKNLSTTMFGNPLRTHGKIVQNGREVYKWAARTLPIGIKKLLCQAELQLE 243 Query: 244 QVDWFIPHSANLRMIEPICERLNYPFEQALYSLEYFGNTSAASIPLALDLGVREGKVVNG 303 +V+WF+PHSANLRMIE ICE+ +P ++ L S+ Y GNTS+ SIPLALD+G+ EG+V G Sbjct: 244 EVNWFVPHSANLRMIESICEKSGFPLDKTLTSVTYMGNTSSVSIPLALDIGMNEGQVKKG 303 Query: 304 QQILLYGFGAGLTQAGQLVKLELAPEVSPPTPL 336 +LLYGFG GLT AG ++K LA E P+ Sbjct: 304 DTLLLYGFGGGLTHAGHIIKWHLAKEWEMKYPI 336 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,063,368,463 Number of extensions: 89611284 Number of successful extensions: 241792 Number of sequences better than 1.0e-05: 2311 Number of HSP's gapped: 236725 Number of HSP's successfully gapped: 2319 Length of query: 336 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 200 Effective length of database: 1,779,438,163 Effective search space: 355887632600 Effective search space used: 355887632600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)