BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0011.p (322 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2V6K3.1 C2V6K3_BACCE Ferrichrome-binding periplasmic protein 388 e-106 C2UQ79.1 C2UQ79_BACCE Ferrichrome-binding periplasmic protein 388 e-106 C2TS24.1 C2TS24_BACCE Ferrichrome-binding periplasmic protein 388 e-106 B7H7D5.1 B7H7D5_BACC4 Iron compound ABC transporter, iron compou... 388 e-106 C2X6I5.1 C2X6I5_BACCE Ferrichrome-binding periplasmic protein 388 e-106 >C2V6K3.1 C2V6K3_BACCE Ferrichrome-binding periplasmic protein Length = 305 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 194/322 (60%), Positives = 238/322 (73%), Gaps = 17/322 (5%) Query: 1 MKKIFIPFVLILGIVLSACGGNQAKVPXXXXXXXXXXXXXXXXXXXXXXXXXXFTYESEN 60 MKK+FI ++ +V+SAC TY+SEN Sbjct: 1 MKKLFISLTVLFVLVMSACSNGST----------------DKKNDAKGSKSETITYQSEN 44 Query: 61 GPVEVPKNPQRVVVLTRFLTGNVMALGVPVVGVDEMSKTNPRFEEKLKDVEAVSDESLEK 120 G VEVP NP+RVVVL+ F GNVM+LGV VVGVD SK NPRF+ KLKDV VSDE++EK Sbjct: 45 GKVEVPANPKRVVVLSSF-AGNVMSLGVNVVGVDSWSKQNPRFDSKLKDVAEVSDENVEK 103 Query: 121 IIELQPDLIIGLSDIKNIDKFKQIAPTVTYTYNKVDYLTLQLQVGKLLNKEKEAQAWVDD 180 I EL PDLIIGLS+IKN+DK K+IAPTVTYTY KVDYLT L++GKLLNKEKEA+ W+DD Sbjct: 104 IAELNPDLIIGLSNIKNVDKLKKIAPTVTYTYGKVDYLTQHLEIGKLLNKEKEAKTWIDD 163 Query: 181 FKARTEKAGEEIRAKIGKEATVSVIETFNKQLYVYGYNFGRGTELLYGAFKLGMPEKVKE 240 FK R ++AG+EI+AKIG++ATVSV+E FNKQLYVYG N+GRGTE+LY KL MPEKVKE Sbjct: 164 FKKRAQEAGKEIKAKIGEDATVSVVENFNKQLYVYGENWGRGTEILYQEMKLKMPEKVKE 223 Query: 241 GTKTDGYLAVSTEVLKDYLGDYVIFSKNAEEDNSFQNTDIYKSIPAVQNNHVFEADAKAF 300 +GY A+STEVL ++ GDY+I SKN + DNSFQ T+ YK+IPAV+NN V+EA+ F Sbjct: 224 KALKEGYYALSTEVLPEFAGDYLIVSKNKDTDNSFQETESYKNIPAVKNNRVYEANMMEF 283 Query: 301 YFNDPLSLEYQLEFFEHSFLGK 322 YFNDPL+L++QL+FF+ SFLGK Sbjct: 284 YFNDPLTLDFQLDFFKKSFLGK 305 >C2UQ79.1 C2UQ79_BACCE Ferrichrome-binding periplasmic protein Length = 305 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 194/322 (60%), Positives = 238/322 (73%), Gaps = 17/322 (5%) Query: 1 MKKIFIPFVLILGIVLSACGGNQAKVPXXXXXXXXXXXXXXXXXXXXXXXXXXFTYESEN 60 MKK+FI ++ +V+SAC TY+SEN Sbjct: 1 MKKLFISLTVLFVLVMSACSNGST----------------DKKNDAKGSKSETITYQSEN 44 Query: 61 GPVEVPKNPQRVVVLTRFLTGNVMALGVPVVGVDEMSKTNPRFEEKLKDVEAVSDESLEK 120 G VEVP NP+RVVVL+ F GNVM+LGV VVGVD SK NPRF+ KLKDV VSDE++EK Sbjct: 45 GKVEVPANPKRVVVLSSF-AGNVMSLGVNVVGVDSWSKQNPRFDSKLKDVAEVSDENVEK 103 Query: 121 IIELQPDLIIGLSDIKNIDKFKQIAPTVTYTYNKVDYLTLQLQVGKLLNKEKEAQAWVDD 180 I EL PDLIIGLS+IKN+DK K+IAPTVTYTY KVDYLT L++GKLLNKEKEA+ W+DD Sbjct: 104 IAELNPDLIIGLSNIKNVDKLKKIAPTVTYTYGKVDYLTQHLEIGKLLNKEKEAKTWIDD 163 Query: 181 FKARTEKAGEEIRAKIGKEATVSVIETFNKQLYVYGYNFGRGTELLYGAFKLGMPEKVKE 240 FK R ++AG+EI+AKIG++ATVSV+E FNKQLYVYG N+GRGTE+LY KL MPEKVKE Sbjct: 164 FKKRAQEAGKEIKAKIGEDATVSVVENFNKQLYVYGENWGRGTEILYQEMKLKMPEKVKE 223 Query: 241 GTKTDGYLAVSTEVLKDYLGDYVIFSKNAEEDNSFQNTDIYKSIPAVQNNHVFEADAKAF 300 +GY A+STEVL ++ GDY+I SKN + DNSFQ T+ YK+IPAV+NN V+EA+ F Sbjct: 224 KALKEGYYALSTEVLPEFAGDYLIVSKNKDTDNSFQETESYKNIPAVKNNRVYEANMMEF 283 Query: 301 YFNDPLSLEYQLEFFEHSFLGK 322 YFNDPL+L++QL+FF+ SFLGK Sbjct: 284 YFNDPLTLDFQLDFFKKSFLGK 305 >C2TS24.1 C2TS24_BACCE Ferrichrome-binding periplasmic protein Length = 305 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 194/322 (60%), Positives = 238/322 (73%), Gaps = 17/322 (5%) Query: 1 MKKIFIPFVLILGIVLSACGGNQAKVPXXXXXXXXXXXXXXXXXXXXXXXXXXFTYESEN 60 MKK+FI ++ +V+SAC TY+SEN Sbjct: 1 MKKLFISLTVLFVLVMSACSNGST----------------DKKNDAKGSKSETITYQSEN 44 Query: 61 GPVEVPKNPQRVVVLTRFLTGNVMALGVPVVGVDEMSKTNPRFEEKLKDVEAVSDESLEK 120 G VEVP NP+RVVVL+ F GNVM+LGV VVGVD SK NPRF+ KLKDV VSDE++EK Sbjct: 45 GKVEVPANPKRVVVLSSF-AGNVMSLGVNVVGVDSWSKQNPRFDSKLKDVAEVSDENVEK 103 Query: 121 IIELQPDLIIGLSDIKNIDKFKQIAPTVTYTYNKVDYLTLQLQVGKLLNKEKEAQAWVDD 180 I EL PDLIIGLS+IKN+DK K+IAPTVTYTY KVDYLT L++GKLLNKEKEA+ W+DD Sbjct: 104 IAELNPDLIIGLSNIKNVDKLKKIAPTVTYTYGKVDYLTQHLEIGKLLNKEKEAKTWIDD 163 Query: 181 FKARTEKAGEEIRAKIGKEATVSVIETFNKQLYVYGYNFGRGTELLYGAFKLGMPEKVKE 240 FK R ++AG+EI+AKIG++ATVSV+E FNKQLYVYG N+GRGTE+LY KL MPEKVKE Sbjct: 164 FKKRAQEAGKEIKAKIGEDATVSVVENFNKQLYVYGENWGRGTEILYQEMKLKMPEKVKE 223 Query: 241 GTKTDGYLAVSTEVLKDYLGDYVIFSKNAEEDNSFQNTDIYKSIPAVQNNHVFEADAKAF 300 +GY A+STEVL ++ GDY+I SKN + DNSFQ T+ YK+IPAV+NN V+EA+ F Sbjct: 224 KALKEGYYALSTEVLPEFAGDYLIVSKNKDTDNSFQETESYKNIPAVKNNRVYEANMMEF 283 Query: 301 YFNDPLSLEYQLEFFEHSFLGK 322 YFNDPL+L++QL+FF+ SFLGK Sbjct: 284 YFNDPLTLDFQLDFFKKSFLGK 305 >B7H7D5.1 B7H7D5_BACC4 Iron compound ABC transporter, iron compound-binding protein Length = 305 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 194/322 (60%), Positives = 239/322 (74%), Gaps = 17/322 (5%) Query: 1 MKKIFIPFVLILGIVLSACGGNQAKVPXXXXXXXXXXXXXXXXXXXXXXXXXXFTYESEN 60 MKK+FI ++ +V+SAC + TY+SEN Sbjct: 1 MKKLFISLTVLFVLVMSACSNSST----------------DKKDDAKGSKSETITYQSEN 44 Query: 61 GPVEVPKNPQRVVVLTRFLTGNVMALGVPVVGVDEMSKTNPRFEEKLKDVEAVSDESLEK 120 G VEVP NP+RVVVL+ F GNVM+LGV +VGVD SK NPRF+ KLKDV VSDE++EK Sbjct: 45 GKVEVPANPKRVVVLSSF-AGNVMSLGVNLVGVDSWSKQNPRFDSKLKDVAEVSDENVEK 103 Query: 121 IIELQPDLIIGLSDIKNIDKFKQIAPTVTYTYNKVDYLTLQLQVGKLLNKEKEAQAWVDD 180 I EL PDLIIGLS+IKN+DK K+IAPTVTYTY KVDYLT L++GKLLNKEKEA+ WVDD Sbjct: 104 IAELNPDLIIGLSNIKNVDKLKKIAPTVTYTYGKVDYLTQHLEIGKLLNKEKEAKTWVDD 163 Query: 181 FKARTEKAGEEIRAKIGKEATVSVIETFNKQLYVYGYNFGRGTELLYGAFKLGMPEKVKE 240 FK R ++AG+EI+AKIG++ATVSV+E FNKQLYVYG N+GRGTE+LY KL MPEKVKE Sbjct: 164 FKKRAQEAGKEIKAKIGEDATVSVVENFNKQLYVYGENWGRGTEILYQEMKLKMPEKVKE 223 Query: 241 GTKTDGYLAVSTEVLKDYLGDYVIFSKNAEEDNSFQNTDIYKSIPAVQNNHVFEADAKAF 300 +GY A+STEVL ++ GDY+I SKN + DNSFQ T+ YK+IPAV+NN V+EA+ F Sbjct: 224 KALKEGYYALSTEVLPEFAGDYLIVSKNKDTDNSFQETESYKNIPAVKNNRVYEANMMEF 283 Query: 301 YFNDPLSLEYQLEFFEHSFLGK 322 YFNDPL+L++QL+FF+ SFLGK Sbjct: 284 YFNDPLTLDFQLDFFKKSFLGK 305 >C2X6I5.1 C2X6I5_BACCE Ferrichrome-binding periplasmic protein Length = 305 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 194/322 (60%), Positives = 239/322 (74%), Gaps = 17/322 (5%) Query: 1 MKKIFIPFVLILGIVLSACGGNQAKVPXXXXXXXXXXXXXXXXXXXXXXXXXXFTYESEN 60 MKK+FI ++ +V+SAC + TY+SEN Sbjct: 1 MKKLFISLTVLFVLVMSACSNSST----------------DKKDDAKGSKSETITYQSEN 44 Query: 61 GPVEVPKNPQRVVVLTRFLTGNVMALGVPVVGVDEMSKTNPRFEEKLKDVEAVSDESLEK 120 G VEVP NP+RVVVL+ F GNVM+LGV +VGVD SK NPRF+ KLKDV VSDE++EK Sbjct: 45 GKVEVPANPKRVVVLSSF-AGNVMSLGVNLVGVDSWSKQNPRFDSKLKDVAEVSDENVEK 103 Query: 121 IIELQPDLIIGLSDIKNIDKFKQIAPTVTYTYNKVDYLTLQLQVGKLLNKEKEAQAWVDD 180 I EL PDLIIGLS+IKN+DK K+IAPTVTYTY KVDYLT L++GKLLNKEKEA+ WVDD Sbjct: 104 IAELNPDLIIGLSNIKNVDKLKKIAPTVTYTYGKVDYLTQHLEIGKLLNKEKEAKTWVDD 163 Query: 181 FKARTEKAGEEIRAKIGKEATVSVIETFNKQLYVYGYNFGRGTELLYGAFKLGMPEKVKE 240 FK R ++AG+EI+AKIG++ATVSV+E FNKQLYVYG N+GRGTE+LY KL MPEKVKE Sbjct: 164 FKKRAQEAGKEIKAKIGEDATVSVVENFNKQLYVYGENWGRGTEILYQEMKLKMPEKVKE 223 Query: 241 GTKTDGYLAVSTEVLKDYLGDYVIFSKNAEEDNSFQNTDIYKSIPAVQNNHVFEADAKAF 300 +GY A+STEVL ++ GDY+I SKN + DNSFQ T+ YK+IPAV+NN V+EA+ F Sbjct: 224 KALKEGYYALSTEVLPEFAGDYLIVSKNKDTDNSFQETESYKNIPAVKNNRVYEANMMEF 283 Query: 301 YFNDPLSLEYQLEFFEHSFLGK 322 YFNDPL+L++QL+FF+ SFLGK Sbjct: 284 YFNDPLTLDFQLDFFKKSFLGK 305 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,775,347,014 Number of extensions: 71849779 Number of successful extensions: 235229 Number of sequences better than 1.0e-05: 1232 Number of HSP's gapped: 234227 Number of HSP's successfully gapped: 1234 Length of query: 322 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 186 Effective length of database: 1,779,438,163 Effective search space: 330975498318 Effective search space used: 330975498318 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)