BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0010.p (336 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A7GKN2.1 A7GKN2_BACCN Transport system permease protein 350 2e-94 C3AGU7.1 C3AGU7_BACMY Iron compound ABC transporter, permease pr... 347 8e-94 C3AYH5.1 C3AYH5_BACMY Iron compound ABC transporter, permease pr... 347 1e-93 C3BF65.1 C3BF65_9BACI Iron compound ABC transporter, permease pr... 345 5e-93 B1DCV9.1 B1DCV9_9BACL Transport system permease protein 332 2e-89 >A7GKN2.1 A7GKN2_BACCN Transport system permease protein Length = 336 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 178/336 (52%), Positives = 222/336 (66%) Query: 1 MMKTKQASIPFLYKLLGSMLAMVLSFLIAMIFGAKETTLHDLWLAVASGSLADNXXXXXX 60 M K S F+YK + ++ +L F+ +M+FGA +TT+ D+WLA+ S + D Sbjct: 1 MTKNTLRSTSFIYKFILGIIVFLLIFMASMVFGAADTTIKDVWLALTSSAKGDKISIIRE 60 Query: 61 XXXXXXXXXXXIGAAFAVSGAIMQGVTRNPLADPGLLGLTSGANMALALTFVFLPGLNYF 120 +GA AVSGAIMQG+TRNPLADPGLLGLT GAN ALA+T F+P NYF Sbjct: 61 IRLPREVAAIFVGAGLAVSGAIMQGLTRNPLADPGLLGLTGGANAALAITIAFIPSANYF 120 Query: 121 ATMIACFXXXXXXXXXXXXXXXXRQGGLSPIRIVLAGAAVSAFLYAIASGVSIAFKISKD 180 MIACF +QGGLSP RIVLAGAAVSAFL A++ G+ I FKIS+D Sbjct: 121 YIMIACFIGAAIGAIMVFGIGMMKQGGLSPFRIVLAGAAVSAFLIAVSEGIGIYFKISQD 180 Query: 181 VSMWTAGGLIGTTWGQLQTIAPVXXXXXXXXXXXXXXXXXXXXSDEVAIGLGQRXXXXXX 240 VSMWTAGG+IGTTWGQLQ I PV S+EVAIGLGQ+ Sbjct: 181 VSMWTAGGVIGTTWGQLQLIIPVISINVLIAILFSKKLTVLSLSEEVAIGLGQKIIVIKI 240 Query: 241 XXXXXXXXXTGASVALIGDMAFVGLMIPHIVRKIVGTDYRYILPVSVFIGATFMLLADTL 300 GASVAL+G+MAF+GLM+PH+VR +VG DYR+++P+S GA+FMLLADT+ Sbjct: 241 ILFIIIILLAGASVALVGNMAFIGLMVPHMVRPLVGPDYRFVIPMSALAGASFMLLADTI 300 Query: 301 GRTINAPYETPVVAVVAMLGLPFFLFVVRKGGKALS 336 GRT+NAPYETP+VA+VA++GLPFFLF+VRKGG+ S Sbjct: 301 GRTMNAPYETPLVAIVAIVGLPFFLFIVRKGGQTFS 336 >C3AGU7.1 C3AGU7_BACMY Iron compound ABC transporter, permease protein Length = 358 Score = 347 bits (890), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 176/336 (52%), Positives = 222/336 (66%) Query: 1 MMKTKQASIPFLYKLLGSMLAMVLSFLIAMIFGAKETTLHDLWLAVASGSLADNXXXXXX 60 M K S F+YKL+ + + F++AM+FGA +TT+ D+W+A+ S + + Sbjct: 23 MTKDNLRSTSFVYKLILGTIVFFIIFMVAMVFGAADTTIKDVWIALTSNANGEKFSIIRE 82 Query: 61 XXXXXXXXXXXIGAAFAVSGAIMQGVTRNPLADPGLLGLTSGANMALALTFVFLPGLNYF 120 +GA AVSGAIMQG+TRNPLADPGLLGLT GAN ALA+T +P +NYF Sbjct: 83 LRLPREIAAIFVGAGLAVSGAIMQGITRNPLADPGLLGLTGGANAALAITLALIPSVNYF 142 Query: 121 ATMIACFXXXXXXXXXXXXXXXXRQGGLSPIRIVLAGAAVSAFLYAIASGVSIAFKISKD 180 MIACF ++GGLSP+RIVLAGAAVSAFL AI+ G+ I FKIS+D Sbjct: 143 YIMIACFIGAAIGAIMVFGIGMMKKGGLSPLRIVLAGAAVSAFLVAISEGIGIYFKISQD 202 Query: 181 VSMWTAGGLIGTTWGQLQTIAPVXXXXXXXXXXXXXXXXXXXXSDEVAIGLGQRXXXXXX 240 VSMWTAGG+IGT+W QLQ I PV S+EVAIGLGQ+ Sbjct: 203 VSMWTAGGVIGTSWSQLQVIVPVISISIFIAILFSKKLTILSLSEEVAIGLGQKIIVIKI 262 Query: 241 XXXXXXXXXTGASVALIGDMAFVGLMIPHIVRKIVGTDYRYILPVSVFIGATFMLLADTL 300 GASVAL+G+MAF+GLM+PH+VR IVG DYR++LP+S GA+FMLLADTL Sbjct: 263 ILFIVIILLAGASVALVGNMAFIGLMVPHMVRPIVGPDYRFVLPMSAIAGASFMLLADTL 322 Query: 301 GRTINAPYETPVVAVVAMLGLPFFLFVVRKGGKALS 336 GRTINAPYETP+ A++A++GLPFFLF+VRKGG++ S Sbjct: 323 GRTINAPYETPIAAIIAIVGLPFFLFIVRKGGRSFS 358 >C3AYH5.1 C3AYH5_BACMY Iron compound ABC transporter, permease protein Length = 344 Score = 347 bits (889), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 176/336 (52%), Positives = 222/336 (66%) Query: 1 MMKTKQASIPFLYKLLGSMLAMVLSFLIAMIFGAKETTLHDLWLAVASGSLADNXXXXXX 60 M K S F+YKL+ + + F++AM+FGA +TT+ D+W+A+ S + + Sbjct: 9 MTKDNLRSTSFVYKLILGTIVFFIIFMVAMVFGAADTTIKDVWIALTSNANGEKFSIIRE 68 Query: 61 XXXXXXXXXXXIGAAFAVSGAIMQGVTRNPLADPGLLGLTSGANMALALTFVFLPGLNYF 120 +GA AVSGAIMQG+TRNPLADPGLLGLT GAN ALA+T +P +NYF Sbjct: 69 LRLPREIAAIFVGAGLAVSGAIMQGITRNPLADPGLLGLTGGANAALAITLALIPSVNYF 128 Query: 121 ATMIACFXXXXXXXXXXXXXXXXRQGGLSPIRIVLAGAAVSAFLYAIASGVSIAFKISKD 180 MIACF ++GGLSP+RIVLAGAAVSAFL AI+ G+ I FKIS+D Sbjct: 129 YIMIACFIGAAIGAIMVFGIGMMKKGGLSPLRIVLAGAAVSAFLVAISEGIGIYFKISQD 188 Query: 181 VSMWTAGGLIGTTWGQLQTIAPVXXXXXXXXXXXXXXXXXXXXSDEVAIGLGQRXXXXXX 240 VSMWTAGG+IGT+W QLQ I PV S+EVAIGLGQ+ Sbjct: 189 VSMWTAGGVIGTSWSQLQVIVPVISISIFIAILFSKKLTILSLSEEVAIGLGQKIIVIKI 248 Query: 241 XXXXXXXXXTGASVALIGDMAFVGLMIPHIVRKIVGTDYRYILPVSVFIGATFMLLADTL 300 GASVAL+G+MAF+GLM+PH+VR IVG DYR++LP+S GA+FMLLADTL Sbjct: 249 ILFIVIILLAGASVALVGNMAFIGLMVPHMVRPIVGPDYRFVLPMSAIAGASFMLLADTL 308 Query: 301 GRTINAPYETPVVAVVAMLGLPFFLFVVRKGGKALS 336 GRTINAPYETP+ A++A++GLPFFLF+VRKGG++ S Sbjct: 309 GRTINAPYETPIAAIIAIVGLPFFLFIVRKGGRSFS 344 >C3BF65.1 C3BF65_9BACI Iron compound ABC transporter, permease protein Length = 344 Score = 345 bits (884), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 175/336 (52%), Positives = 222/336 (66%) Query: 1 MMKTKQASIPFLYKLLGSMLAMVLSFLIAMIFGAKETTLHDLWLAVASGSLADNXXXXXX 60 M K S F+YKL+ ++ + F++AM+FGA +T++ D+W+A+ S + Sbjct: 9 MTKDNLRSTSFVYKLILGIIVFFIIFMVAMVFGAADTSIKDVWIALTSNVNGEKFSIIRE 68 Query: 61 XXXXXXXXXXXIGAAFAVSGAIMQGVTRNPLADPGLLGLTSGANMALALTFVFLPGLNYF 120 +GA AVSGAIMQG+TRNPLADPGLLGLT GAN ALA+T +P +NYF Sbjct: 69 LRFPREIAAIFVGAGLAVSGAIMQGITRNPLADPGLLGLTGGANAALAITLALIPSVNYF 128 Query: 121 ATMIACFXXXXXXXXXXXXXXXXRQGGLSPIRIVLAGAAVSAFLYAIASGVSIAFKISKD 180 MIACF ++GGLSP+RIVLAGAAVSAFL AI+ G+ I FKIS+D Sbjct: 129 YIMIACFIGAAIGAIMVFGIGMMKKGGLSPLRIVLAGAAVSAFLVAISEGIGIYFKISQD 188 Query: 181 VSMWTAGGLIGTTWGQLQTIAPVXXXXXXXXXXXXXXXXXXXXSDEVAIGLGQRXXXXXX 240 VSMWTAGG+IGT+W QLQ I PV S+EVAIGLGQ+ Sbjct: 189 VSMWTAGGVIGTSWSQLQVIVPVISISIFIAILFSKKLTILSLSEEVAIGLGQKIIVIKI 248 Query: 241 XXXXXXXXXTGASVALIGDMAFVGLMIPHIVRKIVGTDYRYILPVSVFIGATFMLLADTL 300 GASVAL+G+MAF+GLM+PH+VR IVG DYR++LP+S GA+FMLLADTL Sbjct: 249 ILFIVIILLAGASVALVGNMAFIGLMVPHMVRPIVGPDYRFVLPMSAIAGASFMLLADTL 308 Query: 301 GRTINAPYETPVVAVVAMLGLPFFLFVVRKGGKALS 336 GRTINAPYETP+ A++A++GLPFFLF+VRKGG++ S Sbjct: 309 GRTINAPYETPIAAIIAIVGLPFFLFIVRKGGRSFS 344 >B1DCV9.1 B1DCV9_9BACL Transport system permease protein Length = 337 Score = 332 bits (852), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 179/337 (53%), Positives = 220/337 (65%), Gaps = 1/337 (0%) Query: 1 MMKTKQASIPFLYKLLGSMLAMVLSFLIAMIFGAKETTLHDLWLAVAS-GSLADNXXXXX 59 M++ + IPF+YKL ++ V F +AM+FGA +TT+HD WLA+ S ++ Sbjct: 1 MIQETRRRIPFVYKLFAGIVFFVAIFFLAMVFGAADTTVHDTWLALTSPHDTSEKVTLLR 60 Query: 60 XXXXXXXXXXXXIGAAFAVSGAIMQGVTRNPLADPGLLGLTSGANMALALTFVFLPGLNY 119 +GAA AVSGAIMQGVTRN LADPGLLGL++GAN ALA T P +NY Sbjct: 61 EIRLPREIAAIFVGAALAVSGAIMQGVTRNALADPGLLGLSAGANAALAATVALFPHINY 120 Query: 120 FATMIACFXXXXXXXXXXXXXXXXRQGGLSPIRIVLAGAAVSAFLYAIASGVSIAFKISK 179 F MIACF ++GG SPIRIVLAGAAVS FLYA+A G+ + FK+SK Sbjct: 121 FGIMIACFIGAALGSILVIGIGAAKRGGFSPIRIVLAGAAVSTFLYAVAEGIGLTFKVSK 180 Query: 180 DVSMWTAGGLIGTTWGQLQTIAPVXXXXXXXXXXXXXXXXXXXXSDEVAIGLGQRXXXXX 239 DV+MWTAGGLIGT+WGQLQTI PV S++VA LGQ+ Sbjct: 181 DVNMWTAGGLIGTSWGQLQTIVPVIVAGILIAIVMSKQLTILSLSEDVATSLGQKTGLIK 240 Query: 240 XXXXXXXXXXTGASVALIGDMAFVGLMIPHIVRKIVGTDYRYILPVSVFIGATFMLLADT 299 GASVAL+G++AF+GLMIPHIVR IVG DYRY +P+SV GA+FMLLAD Sbjct: 241 VILFTVTILLAGASVALVGNLAFLGLMIPHIVRAIVGQDYRYSIPMSVIAGASFMLLADL 300 Query: 300 LGRTINAPYETPVVAVVAMLGLPFFLFVVRKGGKALS 336 +GRTINAPYETPV AV+A++GLPFFL +VR+GGKAL Sbjct: 301 IGRTINAPYETPVAAVIAVVGLPFFLIIVRRGGKALK 337 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.140 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,449,591,684 Number of extensions: 46951854 Number of successful extensions: 165640 Number of sequences better than 1.0e-05: 5096 Number of HSP's gapped: 155989 Number of HSP's successfully gapped: 5539 Length of query: 336 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 200 Effective length of database: 1,779,438,163 Effective search space: 355887632600 Effective search space used: 355887632600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)