BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0009.p (335 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6CQH1.1 A6CQH1_9BACI Iron compound ABC transporter, permease pr... 419 e-115 B1YEZ9.1 B1YEZ9_EXIS2 Transport system permease protein 399 e-109 A7GKN1.1 A7GKN1_BACCN Transport system permease protein 394 e-108 Q3EK66.1 Q3EK66_BACTI Ferrichrome transport system permease prot... 393 e-107 Q81ZC0.1 Q81ZC0_BACAN Iron compound ABC transporter, permease pr... 393 e-107 >A6CQH1.1 A6CQH1_9BACI Iron compound ABC transporter, permease protein Length = 336 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 206/335 (61%), Positives = 252/335 (75%) Query: 1 MTSSAPVRKQRXXXXXXXXXXXXTAIAGMGLGYSSLSFDRLLPVLFGHGTFKEDFVLFSV 60 M + ++KQR TAI GMG+G+SSLS++RLLP LFG GTFKE+FVLFSV Sbjct: 1 MIHPSIIKKQRRVMLGLLALIILTAIIGMGMGFSSLSYNRLLPTLFGQGTFKEEFVLFSV 60 Query: 61 RLPRILITXXXXXXXXXXXXXXQSVTRNDLADPGIIGINSGAGVAVAVFFLYFPVSTGSF 120 RLPR++IT Q++TRNDLADPGIIGINSGAG A+AVFFL+FP+ GSF Sbjct: 61 RLPRVVITLLAGMALAVSGAILQTITRNDLADPGIIGINSGAGAAIAVFFLFFPIDAGSF 120 Query: 121 IYALPLAAFIGAIMTATLIYLFSYSRTRGLDPIRMVLVGVGFSLALSGVMIVIISSAERA 180 +YA+P AF GA++TA LIYLFSY RT GL P+R+VL GVGFS+ALSGVMIV+ISSAER Sbjct: 121 VYAIPGIAFAGALLTAILIYLFSYKRTAGLQPVRLVLTGVGFSMALSGVMIVLISSAERQ 180 Query: 181 KVDFIAKWIAGNIWGTDYPFIWALLPWLVLLIPFTLFKSSQLNLLSLNEVSAVGVGLNLE 240 KVDFIA+W+AGNIWG D+PFI A+LPWL++LIPFTL+K+++LNLL LNE A+GVG++LE Sbjct: 181 KVDFIARWLAGNIWGGDWPFIVAILPWLLILIPFTLYKANKLNLLGLNEPVAIGVGVSLE 240 Query: 241 RERXXXXXXXXXXXXXXXXXTGGIAFIGLMAPHIAKSLVGPRNQMFIPVXXXXXXXXXXX 300 RER TGGIAFIGLMAPHIAK+LVGPR+Q+++PV Sbjct: 241 RERFILLLAAVALAAAAVSVTGGIAFIGLMAPHIAKALVGPRHQLYLPVAILAGGWLLMF 300 Query: 301 XDTVGRNIADPDGIPAGIMVSLIGVPYFAYLLLRK 335 DT+GRN+ DPDGIPAGIM +LIG PYF YLL++K Sbjct: 301 ADTIGRNLTDPDGIPAGIMTALIGAPYFMYLLMKK 335 >B1YEZ9.1 B1YEZ9_EXIS2 Transport system permease protein Length = 335 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/328 (59%), Positives = 246/328 (75%) Query: 8 RKQRXXXXXXXXXXXXTAIAGMGLGYSSLSFDRLLPVLFGHGTFKEDFVLFSVRLPRILI 67 R+QR T + +GLG +S+S+DRLLP LFG G+FKEDFVLFS+RLPRI+I Sbjct: 8 RRQRLIFLLLSLLLLGTIVVSIGLGPASVSYDRLLPTLFGQGSFKEDFVLFSLRLPRIII 67 Query: 68 TXXXXXXXXXXXXXXQSVTRNDLADPGIIGINSGAGVAVAVFFLYFPVSTGSFIYALPLA 127 T Q +TRN+LADPGIIGIN+GAGVAVA+FFLYFPV GSFIY LP+A Sbjct: 68 TLLAGMALALSGSILQGITRNELADPGIIGINTGAGVAVAIFFLYFPVDVGSFIYGLPVA 127 Query: 128 AFIGAIMTATLIYLFSYSRTRGLDPIRMVLVGVGFSLALSGVMIVIISSAERAKVDFIAK 187 AF+GA++TA IY SY R RGL PIR++L GVGFS+ALSG+M+++ISS +R KVDFIAK Sbjct: 128 AFLGALVTAVAIYALSYDRNRGLQPIRLILTGVGFSMALSGIMVILISSTKREKVDFIAK 187 Query: 188 WIAGNIWGTDYPFIWALLPWLVLLIPFTLFKSSQLNLLSLNEVSAVGVGLNLERERXXXX 247 W+AGNIWGTD+ F++ALLPWL++LIPFTL+K+++LNLL+LNE A+GVG+++E+ER Sbjct: 188 WLAGNIWGTDWTFVYALLPWLIVLIPFTLYKANKLNLLALNEPVAIGVGVSIEKERIQLL 247 Query: 248 XXXXXXXXXXXXXTGGIAFIGLMAPHIAKSLVGPRNQMFIPVXXXXXXXXXXXXDTVGRN 307 TGGI+FIGLMAPHIA++LVGPR+Q F+P+ DT+GRN Sbjct: 248 LTAVALAASAVSVTGGISFIGLMAPHIARALVGPRHQWFLPIALLIGGWLLVLADTIGRN 307 Query: 308 IADPDGIPAGIMVSLIGVPYFAYLLLRK 335 IA PDG+PAGI+V+LIG PYF YLLL+K Sbjct: 308 IAGPDGVPAGIVVALIGAPYFIYLLLKK 335 >A7GKN1.1 A7GKN1_BACCN Transport system permease protein Length = 336 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 199/329 (60%), Positives = 236/329 (71%) Query: 7 VRKQRXXXXXXXXXXXXTAIAGMGLGYSSLSFDRLLPVLFGHGTFKEDFVLFSVRLPRIL 66 +RKQR T MGLG +SLS+DRLLP LFG GTFKE+FVLFS+RLPRI Sbjct: 6 LRKQRLIILALLILIITTITISMGLGAASLSYDRLLPTLFGKGTFKEEFVLFSLRLPRIT 65 Query: 67 ITXXXXXXXXXXXXXXQSVTRNDLADPGIIGINSGAGVAVAVFFLYFPVSTGSFIYALPL 126 IT Q +TRNDLA+PGIIGINSGAGVA+A+FFLYFP+ GSFIY LP+ Sbjct: 66 ITLLAGMALSLSGAILQGITRNDLAEPGIIGINSGAGVAIAIFFLYFPIDAGSFIYLLPV 125 Query: 127 AAFIGAIMTATLIYLFSYSRTRGLDPIRMVLVGVGFSLALSGVMIVIISSAERAKVDFIA 186 FIGA +TA LIY+FSY +T GL PI + L G+GFS ALSG MIVIISSAER KVDFIA Sbjct: 126 VGFIGAFLTACLIYIFSYRKTTGLQPIHLTLTGIGFSFALSGTMIVIISSAERVKVDFIA 185 Query: 187 KWIAGNIWGTDYPFIWALLPWLVLLIPFTLFKSSQLNLLSLNEVSAVGVGLNLERERXXX 246 KWIAGNIWG D+ F+ A+LPWL +LIPF L+K+++LN+L+LNE A+GVG+ LE+ER Sbjct: 186 KWIAGNIWGDDWVFVLAILPWLAILIPFILYKANRLNILALNEPVAIGVGIELEKERRSL 245 Query: 247 XXXXXXXXXXXXXXTGGIAFIGLMAPHIAKSLVGPRNQMFIPVXXXXXXXXXXXXDTVGR 306 TGGIAFIGLMAPHIAKSLVGPR+QMF+PV DT+GR Sbjct: 246 LLAAVALAAAAVSVTGGIAFIGLMAPHIAKSLVGPRHQMFVPVAILIGGWLLSLADTIGR 305 Query: 307 NIADPDGIPAGIMVSLIGVPYFAYLLLRK 335 +I +P GIPAGI+V+LIG PYF YLLL+ Sbjct: 306 HIVEPSGIPAGIVVALIGAPYFMYLLLKS 334 >Q3EK66.1 Q3EK66_BACTI Ferrichrome transport system permease protein fhuG Length = 335 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/329 (58%), Positives = 243/329 (73%) Query: 7 VRKQRXXXXXXXXXXXXTAIAGMGLGYSSLSFDRLLPVLFGHGTFKEDFVLFSVRLPRIL 66 +RKQR T + GMGLG +SLS+DRLLP L G GTFKE+FVL+S+RLPRI+ Sbjct: 6 LRKQRLIILALLILTITTIVVGMGLGSASLSYDRLLPTLMGQGTFKEEFVLYSLRLPRIV 65 Query: 67 ITXXXXXXXXXXXXXXQSVTRNDLADPGIIGINSGAGVAVAVFFLYFPVSTGSFIYALPL 126 IT Q +TRNDLA+PGI+GINSGAGVAVA+FFLYFP+ GSF+Y LP+ Sbjct: 66 ITLLAGMALALSGAIFQGITRNDLAEPGILGINSGAGVAVAIFFLYFPIDVGSFLYLLPV 125 Query: 127 AAFIGAIMTATLIYLFSYSRTRGLDPIRMVLVGVGFSLALSGVMIVIISSAERAKVDFIA 186 FIGA +TA LIY+FSYS++ GL PIR+ L G+GFS ALSG+MIV+ISSA+R KVDFIA Sbjct: 126 VGFIGAFLTAVLIYVFSYSKSTGLQPIRLTLTGIGFSFALSGMMIVLISSADRMKVDFIA 185 Query: 187 KWIAGNIWGTDYPFIWALLPWLVLLIPFTLFKSSQLNLLSLNEVSAVGVGLNLERERXXX 246 KWIAGNIWG D+ F+ A+LPWL++LIPF +K+++LN+L+LNE A+GVG+ +E+ER Sbjct: 186 KWIAGNIWGDDWVFVLAMLPWLIVLIPFVFYKANRLNILALNEPVAIGVGIEIEKERRYL 245 Query: 247 XXXXXXXXXXXXXXTGGIAFIGLMAPHIAKSLVGPRNQMFIPVXXXXXXXXXXXXDTVGR 306 TGGI+FIGLMAPHIAKSLVGPR+Q+F+P+ DT+GR Sbjct: 246 LVAAVALAAAAVSVTGGISFIGLMAPHIAKSLVGPRHQIFMPIAVLIGGWLLLLADTIGR 305 Query: 307 NIADPDGIPAGIMVSLIGVPYFAYLLLRK 335 NI +P+GIPAGI+V+LIG PYF YLLL+K Sbjct: 306 NIVEPNGIPAGIVVALIGAPYFMYLLLKK 334 >Q81ZC0.1 Q81ZC0_BACAN Iron compound ABC transporter, permease protein Length = 335 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/329 (58%), Positives = 245/329 (74%) Query: 7 VRKQRXXXXXXXXXXXXTAIAGMGLGYSSLSFDRLLPVLFGHGTFKEDFVLFSVRLPRIL 66 +RKQR T + GMGLG +SLS+DRLLP+L G GTFKE+FVL+S+RLPRI+ Sbjct: 6 LRKQRLIILALLILTITTIVIGMGLGSASLSYDRLLPILMGQGTFKEEFVLYSLRLPRII 65 Query: 67 ITXXXXXXXXXXXXXXQSVTRNDLADPGIIGINSGAGVAVAVFFLYFPVSTGSFIYALPL 126 IT Q +TRNDLA+PGI+GINSGAGVAVA+FFLYFP+ GSF+Y LP+ Sbjct: 66 ITLLAGMALALSGAILQGITRNDLAEPGILGINSGAGVAVAIFFLYFPIDVGSFLYLLPV 125 Query: 127 AAFIGAIMTATLIYLFSYSRTRGLDPIRMVLVGVGFSLALSGVMIVIISSAERAKVDFIA 186 FIGA +TA LIY+FSYS++ GL P+R+ L G+GF+ ALSG+MIV+ISSA+R KVDFI+ Sbjct: 126 VGFIGAFLTAVLIYVFSYSKSSGLQPVRLTLTGIGFAFALSGMMIVLISSADRMKVDFIS 185 Query: 187 KWIAGNIWGTDYPFIWALLPWLVLLIPFTLFKSSQLNLLSLNEVSAVGVGLNLERERXXX 246 KWIAGNIWG D+ FI+A+LPWL++LIPF +K+++LN+L+LNE A+GVG+ +E+ER Sbjct: 186 KWIAGNIWGDDWIFIFAMLPWLIVLIPFVFYKANRLNILALNEPVAIGVGIEIEKERRYL 245 Query: 247 XXXXXXXXXXXXXXTGGIAFIGLMAPHIAKSLVGPRNQMFIPVXXXXXXXXXXXXDTVGR 306 TGGI+FIGLMAPHIAKSLVGPR+Q+F+P+ DT+GR Sbjct: 246 LVAAVALAAAAVSVTGGISFIGLMAPHIAKSLVGPRHQIFMPIALLIGGWLLLLADTIGR 305 Query: 307 NIADPDGIPAGIMVSLIGVPYFAYLLLRK 335 NI +P+GIPAGI+V+LIG PYF YLLL+K Sbjct: 306 NIVEPNGIPAGIVVALIGAPYFMYLLLKK 334 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.144 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,610,850,650 Number of extensions: 56211612 Number of successful extensions: 234746 Number of sequences better than 1.0e-05: 5181 Number of HSP's gapped: 220975 Number of HSP's successfully gapped: 5518 Length of query: 335 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 199 Effective length of database: 1,779,438,163 Effective search space: 354108194437 Effective search space used: 354108194437 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)