BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0006.p
         (119 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q5WIW8.1 Q5WIW8_BACSK Putative uncharacterized protein                133   6e-30
O34559.1 URHG2_BACSU Unsaturated rhamnogalacturonyl hydrolase yt...   132   1e-29
Q65FY8.1 Q65FY8_BACLD YteR                                            131   2e-29
Q9KFJ4.1 Q9KFJ4_BACHD BH0485 protein                                  129   7e-29
Q8EPL5.1 Q8EPL5_OCEIH Hypothetical conserved protein                  125   2e-27

>Q5WIW8.1 Q5WIW8_BACSK Putative uncharacterized protein
          Length = 370

 Score =  133 bits (334), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 76/100 (76%)

Query: 11  PIEWAKQACDSLMDTYTAGELPPAHRWHYHQGVFLCGMEILWEAVREERYIEYIQQYVDD 70
           P+EW K+AC+++M  Y   E+PPA+RWHYHQGVFLCG+  +WE    E Y +Y++ YVD 
Sbjct: 12  PLEWGKKACEAIMSKYEPVEMPPANRWHYHQGVFLCGVHRIWEMDHNEAYFQYVKDYVDA 71

Query: 71  LVDENGNLYFARDELDAIQAGLLLFTLHKRTGKEKYRIAA 110
           L+DE+GN  F RDELDAIQAGLLL  L +RTG+ +Y+ AA
Sbjct: 72  LIDEDGNFLFRRDELDAIQAGLLLLPLFRRTGEYRYQEAA 111


>O34559.1 URHG2_BACSU Unsaturated rhamnogalacturonyl hydrolase yteR
           EC=3.2.1.-
          Length = 373

 Score =  132 bits (331), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 79/101 (78%)

Query: 10  TPIEWAKQACDSLMDTYTAGELPPAHRWHYHQGVFLCGMEILWEAVREERYIEYIQQYVD 69
           +P+ +A+   +++M+TYT  ELPPA+RWHYHQGVFLCG+  LWEA  E+RY EY + Y D
Sbjct: 12  SPLTYAEALANTIMNTYTVEELPPANRWHYHQGVFLCGVLRLWEATGEKRYFEYAKAYAD 71

Query: 70  DLVDENGNLYFARDELDAIQAGLLLFTLHKRTGKEKYRIAA 110
            L+D+NGNL F RDELDAIQAGL+LF L+++T  E+Y  AA
Sbjct: 72  LLIDDNGNLLFRRDELDAIQAGLILFPLYEQTKDERYVKAA 112


>Q65FY8.1 Q65FY8_BACLD YteR
          Length = 373

 Score =  131 bits (329), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/104 (56%), Positives = 78/104 (75%)

Query: 7   LPATPIEWAKQACDSLMDTYTAGELPPAHRWHYHQGVFLCGMEILWEAVREERYIEYIQQ 66
           +  +P+  A++A  ++M  YT  ELPPA RWHYHQGVFLCG+  LWE   +E Y +Y+++
Sbjct: 6   ITKSPLYIAEEAAKTIMKAYTPKELPPAGRWHYHQGVFLCGLIRLWEETGKEAYFKYVKE 65

Query: 67  YVDDLVDENGNLYFARDELDAIQAGLLLFTLHKRTGKEKYRIAA 110
           Y DDL+D+ GN YF RDELDAIQAGLLL+ L++ TG E+YR AA
Sbjct: 66  YADDLIDDCGNFYFRRDELDAIQAGLLLYPLYEETGDERYRKAA 109


>Q9KFJ4.1 Q9KFJ4_BACHD BH0485 protein
          Length = 365

 Score =  129 bits (325), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 78/107 (72%)

Query: 4   IGSLPATPIEWAKQACDSLMDTYTAGELPPAHRWHYHQGVFLCGMEILWEAVREERYIEY 63
           + +L    +  A+QAC ++M  Y   ELPP +RWHYHQGVFL GM  +WEA ++E Y+ Y
Sbjct: 1   MSTLSVATMAVAEQACQTMMKRYEPLELPPKNRWHYHQGVFLYGMYRVWEATKKEEYLSY 60

Query: 64  IQQYVDDLVDENGNLYFARDELDAIQAGLLLFTLHKRTGKEKYRIAA 110
            + YVD L+DE+GN YFARDELDAIQAGLLLF L+++T   +Y +AA
Sbjct: 61  TKGYVDGLIDEHGNFYFARDELDAIQAGLLLFPLYEKTKDSRYEVAA 107


>Q8EPL5.1 Q8EPL5_OCEIH Hypothetical conserved protein
          Length = 368

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/100 (53%), Positives = 74/100 (74%)

Query: 11  PIEWAKQACDSLMDTYTAGELPPAHRWHYHQGVFLCGMEILWEAVREERYIEYIQQYVDD 70
           P+ WA++AC S+M+ +T  +LPP +RWHYHQGVFL GM  +++  +   Y  Y++ YVD+
Sbjct: 12  PLTWAEKACKSMMNQFTPSQLPPQNRWHYHQGVFLSGMLEVFKETQGNEYYNYVKAYVDN 71

Query: 71  LVDENGNLYFARDELDAIQAGLLLFTLHKRTGKEKYRIAA 110
           L+DE GN  FAR ELDAIQ GLLL  L+K TG ++Y+IA+
Sbjct: 72  LIDEEGNFLFARSELDAIQPGLLLLYLYKHTGDKRYKIAS 111


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.139    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 743,450,643
Number of extensions: 28456840
Number of successful extensions: 139410
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 139427
Number of HSP's successfully gapped: 46
Length of query: 119
Length of database: 3,060,696,203
Length adjustment: 85
Effective length of query: 34
Effective length of database: 2,259,909,928
Effective search space: 76836937552
Effective search space used: 76836937552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)