BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0005.p (291 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D8A5.1 B1D8A5_9BACL Binding-protein-dependent transport system... 449 e-124 B3KFU4.1 B3KFU4_9BACI Binding-protein-dependent transport system... 442 e-122 A8FGF7.1 A8FGF7_BACP2 ABC superfamily ATP binding cassette trans... 402 e-110 B4ANQ2.1 B4ANQ2_BACPU Protein LplC 400 e-110 Q9KFJ8.1 Q9KFJ8_BACHD ABC transporter (Permiase) 398 e-109 >B1D8A5.1 B1D8A5_9BACL Binding-protein-dependent transport systems inner membrane component Length = 288 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/282 (75%), Positives = 244/282 (86%) Query: 1 MVEDRTIGGRLFAAVNFXXXXXXXXXXVLPFIHVVAGSFTTSAELAANKFVLFPKVWSFE 60 M++DRT+G RLF VNF VLPFIHVVAGS TTSAE+A KF++FP SFE Sbjct: 1 MIQDRTMGSRLFGIVNFTLLAIFSLATVLPFIHVVAGSLTTSAEMAVKKFIVFPTDISFE 60 Query: 61 AYTFIFSTNTIIKSMGVSIGVTLVGTLFSMLITALMAYGLSRRDLDGRNVFNFLVVFTML 120 AY F+FSTNTI +S+ VSIGVTL+GT+FSML+T++MAYGLSR+DLDGR F+VVFTML Sbjct: 61 AYRFVFSTNTIFRSIAVSIGVTLIGTVFSMLVTSMMAYGLSRKDLDGRKTIMFMVVFTML 120 Query: 121 FHGGMIPTFLVVKELGLIDSYAALILPSAISAFNMIILKNFFQNIPEGLEESAKIDGCND 180 FHGG+IPTFLVVKEL LID+YAALILP ISAFNMIIL+NFFQNIPEGLEESAK+DGC+D Sbjct: 121 FHGGLIPTFLVVKELHLIDTYAALILPLTISAFNMIILRNFFQNIPEGLEESAKMDGCSD 180 Query: 181 FGILFRIVLPLSLPAIATISLFYAVTYWNTYMSAILYLDDSAKWPIQVLLRQIVVLASGM 240 FGILFRIVLPLS+PAIATISLFYAVTYWNTY++AILYL+DS WPIQVLLRQIVVLASG Sbjct: 181 FGILFRIVLPLSMPAIATISLFYAVTYWNTYLNAILYLNDSKMWPIQVLLRQIVVLASGF 240 Query: 241 DYSASLDATNPPPDQTIKMAVIVVATLPILMIYPFLQKHFAK 282 DYS+SLD PPPDQ +KMAVIVVATLPIL++YPFLQKH + Sbjct: 241 DYSSSLDGAVPPPDQAVKMAVIVVATLPILLVYPFLQKHLLR 282 >B3KFU4.1 B3KFU4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 292 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 209/292 (71%), Positives = 252/292 (86%), Gaps = 1/292 (0%) Query: 1 MVEDRTIGGRLFAAVNFXXXXXXXXXXVLPFIHVVAGSFTTSAELAANKFVLFPKVWSFE 60 MV+D+TI R+F VN+ +LPF+HV+AGSFTT ELA +FVLFP VWS + Sbjct: 1 MVQDKTISSRIFDIVNYTLLSIIGLVTILPFLHVIAGSFTTVTELAQKQFVLFPTVWSLD 60 Query: 61 AYTFIFSTNTIIKSMGVSIGVTLVGTLFSMLITALMAYGLSRRDLDGRNVFNFLVVFTML 120 AY ++FSTNT+ +S+GVSIGVT +GTLFSML+T LMAYGLSRRDLDGRN F+V+FTML Sbjct: 61 AYKYVFSTNTVFRSLGVSIGVTFLGTLFSMLLTCLMAYGLSRRDLDGRNFIMFMVLFTML 120 Query: 121 FHGGMIPTFLVVKELGLIDSYAALILPSAISAFNMIILKNFFQNIPEGLEESAKIDGCND 180 F GGMIPTFLVVKE+GLID+YAALI+P+AI+AFN+II++NFFQN+PEGLEESAKIDG D Sbjct: 121 FSGGMIPTFLVVKEMGLIDTYAALIVPTAINAFNLIIMRNFFQNLPEGLEESAKIDGAGD 180 Query: 181 FGILFRIVLPLSLPAIATISLFYAVTYWNTYMSAILYLDDSAKWPIQVLLRQIVVLASGM 240 +GILFRIV+PLS+PAIATISLFYAVTYWNTYMSAILYL+D+AKWP+QV+LRQIV+LASG+ Sbjct: 181 WGILFRIVIPLSMPAIATISLFYAVTYWNTYMSAILYLNDAAKWPVQVILRQIVILASGL 240 Query: 241 DYSAS-LDATNPPPDQTIKMAVIVVATLPILMIYPFLQKHFAKGAMLGSMKG 291 S +D PP+QT+KMAVIV+ATLPIL +YPFLQKHFAKGA+LGS+KG Sbjct: 241 AADTSGMDEFVRPPEQTVKMAVIVIATLPILCVYPFLQKHFAKGALLGSIKG 292 >A8FGF7.1 A8FGF7_BACP2 ABC superfamily ATP binding cassette transporter, membrane protein Length = 292 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 195/289 (67%), Positives = 235/289 (81%), Gaps = 1/289 (0%) Query: 4 DRTIGGRLFAAVNFXXXXXXXXXXVLPFIHVVAGSFTTSAELAANKFVLFPKVWSFEAYT 63 DR++ GRLF N+ VLPFIHV+A SF T E+ KF+LFP +S EAY Sbjct: 4 DRSMKGRLFNLFNYSFLLMFALICVLPFIHVIAASFATVEEVITKKFILFPTTFSLEAYR 63 Query: 64 FIFSTNTIIKSMGVSIGVTLVGTLFSMLITALMAYGLSRRDLDGRNVFNFLVVFTMLFHG 123 +IFST+ + +S+ VSI VTLVGT SM +++LMAYGLSR++L GR FLVVFTMLF G Sbjct: 64 YIFSTDIVYRSLIVSILVTLVGTAVSMFLSSLMAYGLSRQELKGRRTLMFLVVFTMLFSG 123 Query: 124 GMIPTFLVVKELGLIDSYAALILPSAISAFNMIILKNFFQNIPEGLEESAKIDGCNDFGI 183 GMIPTF+VVK LGL+D+Y +LILP AI+AFN+IILKNFFQNIP LEESAK+DGCND GI Sbjct: 124 GMIPTFIVVKTLGLLDTYWSLILPVAINAFNLIILKNFFQNIPASLEESAKMDGCNDLGI 183 Query: 184 LFRIVLPLSLPAIATISLFYAVTYWNTYMSAILYLDDSAKWPIQVLLRQIVVLASGMDYS 243 F+IVLPLSLPAIATISLFYAVTYWNTYM+AILYL+DS KWPIQVLLRQIV+++SGM Sbjct: 184 FFKIVLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSVKWPIQVLLRQIVIVSSGMQGD 243 Query: 244 AS-LDATNPPPDQTIKMAVIVVATLPILMIYPFLQKHFAKGAMLGSMKG 291 S + ++ PPPDQTIKMAVIVVAT+P+L++YPF+QKHF KGA+LGS+KG Sbjct: 244 MSDMGSSTPPPDQTIKMAVIVVATIPVLLVYPFIQKHFNKGALLGSVKG 292 >B4ANQ2.1 B4ANQ2_BACPU Protein LplC Length = 292 Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust. Identities = 195/289 (67%), Positives = 234/289 (80%), Gaps = 1/289 (0%) Query: 4 DRTIGGRLFAAVNFXXXXXXXXXXVLPFIHVVAGSFTTSAELAANKFVLFPKVWSFEAYT 63 DR+I RLF N+ VLPFIHV+A SF T E+ KF+LFP +S EAY Sbjct: 4 DRSIKDRLFNLFNYSFLLMFALICVLPFIHVIAASFATVEEVITKKFILFPTTFSLEAYR 63 Query: 64 FIFSTNTIIKSMGVSIGVTLVGTLFSMLITALMAYGLSRRDLDGRNVFNFLVVFTMLFHG 123 +IFST+ + +S+ VSI VTLVGT SM +++LMAYGLSR++L GR FLVVFTMLF G Sbjct: 64 YIFSTDIVYRSLIVSILVTLVGTAVSMFLSSLMAYGLSRQELKGRRTLMFLVVFTMLFSG 123 Query: 124 GMIPTFLVVKELGLIDSYAALILPSAISAFNMIILKNFFQNIPEGLEESAKIDGCNDFGI 183 GMIPTF+VVK LGL+D+Y +LILP AI+AFN+IILKNFFQNIP LEESAK+DGCND GI Sbjct: 124 GMIPTFIVVKTLGLLDTYWSLILPVAINAFNLIILKNFFQNIPASLEESAKMDGCNDLGI 183 Query: 184 LFRIVLPLSLPAIATISLFYAVTYWNTYMSAILYLDDSAKWPIQVLLRQIVVLASGMDYS 243 F+IVLPLSLPAIATISLFYAVTYWNTYM+AILYL+DS KWPIQVLLRQIV+++SGM Sbjct: 184 FFKIVLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSVKWPIQVLLRQIVIVSSGMQGD 243 Query: 244 AS-LDATNPPPDQTIKMAVIVVATLPILMIYPFLQKHFAKGAMLGSMKG 291 S + ++ PPPDQTIKMAVIVVAT+P+L++YPF+QKHF KGA+LGS+KG Sbjct: 244 MSDMGSSTPPPDQTIKMAVIVVATIPVLLVYPFIQKHFNKGALLGSVKG 292 >Q9KFJ8.1 Q9KFJ8_BACHD ABC transporter (Permiase) Length = 293 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/293 (65%), Positives = 238/293 (81%), Gaps = 2/293 (0%) Query: 1 MVEDRTIGGRLFAAVNFXXXXXXXXXXVLPFIHVVAGSFTTSAELAANKFVLFPKVWSFE 60 MV D+++G R+F N+ LPF+H+VAGSF + E+ +F+LFP +S + Sbjct: 1 MVHDQSLGSRVFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLD 60 Query: 61 AYTFIFSTNTIIKSMGVSIGVTLVGTLFSMLITALMAYGLSRRDLDGRNVFNFLVVFTML 120 AY +IFST+ I +S+ +SI VT+VGT FSM +T+LMAYGLSR+DLDGR V FLVVFTML Sbjct: 61 AYRYIFSTDIIFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTML 120 Query: 121 FHGGMIPTFLVVKELGLIDSYAALILPSAISAFNMIILKNFFQNIPEGLEESAKIDGCND 180 F GGMIPTFLVV+ LGL+D+Y ALI+P+AI+AFN+IILKNFFQNIPE LEESAKIDGCND Sbjct: 121 FSGGMIPTFLVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCND 180 Query: 181 FGILFRIVLPLSLPAIATISLFYAVTYWNTYMSAILYLDDSAKWPIQVLLRQIVVLASGM 240 GI FRIV PLS+PAIATISLFYAVTYWNT+M AILYL+DS+ WPIQVLLRQIV+++SGM Sbjct: 181 VGIFFRIVFPLSMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIVIMSSGM 240 Query: 241 --DYSASLDATNPPPDQTIKMAVIVVATLPILMIYPFLQKHFAKGAMLGSMKG 291 D + PP+QTIKMAVIVVAT+P+L++YPF+QKHFAKGA+LGS+KG Sbjct: 241 QGDLTELGAGFVMPPEQTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVKG 293 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.141 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,546,622,635 Number of extensions: 59424532 Number of successful extensions: 224494 Number of sequences better than 1.0e-05: 5621 Number of HSP's gapped: 216750 Number of HSP's successfully gapped: 5621 Length of query: 291 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 157 Effective length of database: 1,798,280,193 Effective search space: 282329990301 Effective search space used: 282329990301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)