BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0004.p (322 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D8A6.1 B1D8A6_9BACL Binding-protein-dependent transport system... 490 e-137 Q5WIX2.1 Q5WIX2_BACSK Sugar ABC transporter permease 456 e-126 Q65FY7.1 Q65FY7_BACLD Putative uncharacterized protein 452 e-125 C0SPB3.1 YTEP_BACSU Uncharacterized multiple-sugar transport sys... 448 e-124 B4ANQ8.1 B4ANQ8_BACPU Protein LplB 447 e-124 >B1D8A6.1 B1D8A6_9BACL Binding-protein-dependent transport systems inner membrane component Length = 317 Score = 490 bits (1261), Expect = e-137, Method: Compositional matrix adjust. Identities = 235/291 (80%), Positives = 262/291 (90%) Query: 32 NKLLYVMLLPGVLYFVIFKYLPMYGLIISFQDYKPYQGITGSEWVGMEHFQRLFTEPDFL 91 N LYVM+LPG+LYF+IFKY PM+GLII+FQD+KP++GI GSEWVG EHF RLFTEPDFL Sbjct: 27 NIWLYVMVLPGLLYFLIFKYAPMFGLIIAFQDFKPFKGIKGSEWVGFEHFHRLFTEPDFL 86 Query: 92 NILGNTLILFGMNILFYFPIPIILALMLNELRGTFFKRTFQTLIYLPHFMSWVIVVSISF 151 NIL NTL+LFG NILFYFPIPIILALMLNELR FKR FQTLIYLPHFMSWVI+VSIS+ Sbjct: 87 NILTNTLVLFGFNILFYFPIPIILALMLNELRLNAFKRLFQTLIYLPHFMSWVIIVSISY 146 Query: 152 VMTTMDGGIINELLSYFGFEKINFLLSPGWFRPMYIIQIIWREAGWGTIIYLASIAAIDP 211 VM TMDGGI+N +L GFEKINFLLSP WFRP YIIQ+IWREAGWGTIIYLA++AAIDP Sbjct: 147 VMLTMDGGIVNAVLDSLGFEKINFLLSPEWFRPTYIIQVIWREAGWGTIIYLAAMAAIDP 206 Query: 212 GLYEAARMDGAGRLRQIWHITLPAIRGVIVTLLILKIGSVLDLGFEHVYLLLNSMNREVA 271 LYEAAR+DGAGRL QIWHITLPAIR VI+ LLILKIG VL+LGFEHVYLLLNSMNR+VA Sbjct: 207 QLYEAARIDGAGRLHQIWHITLPAIRSVIIVLLILKIGDVLELGFEHVYLLLNSMNRDVA 266 Query: 272 EIIDTYVYTAGLRQGHFSYSTAIGFFKSIIGLVMVMSVNKLSKKMGEEGVY 322 EIIDTYVYTAGL+QG FSYSTAIG FKS++GL+MV++ NKLSKK G EG+Y Sbjct: 267 EIIDTYVYTAGLKQGKFSYSTAIGLFKSVVGLIMVVAANKLSKKFGSEGIY 317 >Q5WIX2.1 Q5WIX2_BACSK Sugar ABC transporter permease Length = 319 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 209/310 (67%), Positives = 263/310 (84%), Gaps = 4/310 (1%) Query: 17 KSYKSSSELKKRLWR----NKLLYVMLLPGVLYFVIFKYLPMYGLIISFQDYKPYQGITG 72 K ++ +E ++ LWR NK +Y+M+ PG+LYF ++KY+PMYGLII+FQDYKPY GITG Sbjct: 10 KWTRTKAERRQELWRKIKKNKWIYLMIAPGLLYFFVYKYIPMYGLIIAFQDYKPYLGITG 69 Query: 73 SEWVGMEHFQRLFTEPDFLNILGNTLILFGMNILFYFPIPIILALMLNELRGTFFKRTFQ 132 SEWVG++HF+RLF++PDF I NTL+LF + + FP+PIILALMLNELR ++R+ Q Sbjct: 70 SEWVGLDHFRRLFSDPDFWMIFKNTLVLFALQVCISFPVPIILALMLNELRSRAYQRSIQ 129 Query: 133 TLIYLPHFMSWVIVVSISFVMTTMDGGIINELLSYFGFEKINFLLSPGWFRPMYIIQIIW 192 T+IY+PHFMSWV++VSIS+VM T+DGGI+N +L F++INFLL+P WFRPMYI+QIIW Sbjct: 130 TMIYIPHFMSWVVIVSISYVMLTLDGGIVNNILRALQFDQINFLLNPEWFRPMYILQIIW 189 Query: 193 REAGWGTIIYLASIAAIDPGLYEAARMDGAGRLRQIWHITLPAIRGVIVTLLILKIGSVL 252 REAGWGTII+LA+IAA+DP LYEAA+MDGA R RQ+WHITLPAIR VI+ LLILKIG VL Sbjct: 190 REAGWGTIIFLAAIAAVDPQLYEAAKMDGANRFRQMWHITLPAIRSVIIVLLILKIGDVL 249 Query: 253 DLGFEHVYLLLNSMNREVAEIIDTYVYTAGLRQGHFSYSTAIGFFKSIIGLVMVMSVNKL 312 +LGFEHVYLLLN+ NREVAEI DTYVYTAGLRQG FSYSTA+GFFK ++GL++V+ N L Sbjct: 250 ELGFEHVYLLLNASNREVAEIFDTYVYTAGLRQGQFSYSTAVGFFKGVVGLILVVMANWL 309 Query: 313 SKKMGEEGVY 322 +K+ GEEG+Y Sbjct: 310 AKRYGEEGIY 319 >Q65FY7.1 Q65FY7_BACLD Putative uncharacterized protein Length = 321 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 210/322 (65%), Positives = 268/322 (83%), Gaps = 1/322 (0%) Query: 1 MQEVSAQPGVVPELKPKSYKSSSELKKRLWRNKLLYVMLLPGVLYFVIFKYLPMYGLIIS 60 M+ Q G P L K + ++L + K LY+M+LPG++YF++FKY+PM+G++I+ Sbjct: 1 MKAADVQTGKNPALVVGK-KRKTRFWEKLLQQKYLYLMILPGLIYFLLFKYVPMWGIVIA 59 Query: 61 FQDYKPYQGITGSEWVGMEHFQRLFTEPDFLNILGNTLILFGMNILFYFPIPIILALMLN 120 FQDY+P+ GITGSEWVG +HF+RLFTEP F +L NTLILF +N++ +FPIPIILAL+LN Sbjct: 60 FQDYQPFLGITGSEWVGFKHFERLFTEPTFFMLLKNTLILFFLNLVVFFPIPIILALLLN 119 Query: 121 ELRGTFFKRTFQTLIYLPHFMSWVIVVSISFVMTTMDGGIINELLSYFGFEKINFLLSPG 180 E+R FK+ QTLIY+PHFMSWVIVVS+SFV+ T+DGG+INE+++YFG EKINFLL+ Sbjct: 120 EVRVALFKKFVQTLIYIPHFMSWVIVVSLSFVLLTVDGGLINEIIAYFGGEKINFLLNES 179 Query: 181 WFRPMYIIQIIWREAGWGTIIYLASIAAIDPGLYEAARMDGAGRLRQIWHITLPAIRGVI 240 WFRPMYI+Q+IWREAGW TIIYLA+I A+DP LYEAA+MDGA RLR++WH+TLPAIR VI Sbjct: 180 WFRPMYILQVIWREAGWSTIIYLAAITAVDPQLYEAAKMDGANRLRRMWHVTLPAIRSVI 239 Query: 241 VTLLILKIGSVLDLGFEHVYLLLNSMNREVAEIIDTYVYTAGLRQGHFSYSTAIGFFKSI 300 V LLILKIG L+LGFEHVYLLLN+ NREVAEI DTYVYTAGL+QG FSYSTA+G FK+ Sbjct: 240 VVLLILKIGDTLELGFEHVYLLLNATNREVAEIFDTYVYTAGLKQGQFSYSTAVGLFKAA 299 Query: 301 IGLVMVMSVNKLSKKMGEEGVY 322 +GL++V+ N+++KK GEEG+Y Sbjct: 300 VGLILVVFANRMAKKFGEEGIY 321 >C0SPB3.1 YTEP_BACSU Uncharacterized multiple-sugar transport system permease yteP Length = 321 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 211/322 (65%), Positives = 265/322 (82%), Gaps = 1/322 (0%) Query: 1 MQEVSAQPGVVPELKPKSYKSSSELKKRLWRNKLLYVMLLPGVLYFVIFKYLPMYGLIIS 60 M+ AQ V + K K L K L + K LY+M+LPG +YF++FKY+PM+G++I+ Sbjct: 1 MKTAEAQAPAVDAVIFKKEKRKRLLIK-LIQQKYLYLMILPGCIYFLLFKYVPMWGIVIA 59 Query: 61 FQDYKPYQGITGSEWVGMEHFQRLFTEPDFLNILGNTLILFGMNILFYFPIPIILALMLN 120 FQDY+P+ GI GSEWVG++HF RLFTEP F +L NTL+LF +N+ +FP+PI+LAL+LN Sbjct: 60 FQDYQPFLGILGSEWVGLKHFIRLFTEPTFFLLLKNTLVLFALNLAIFFPVPILLALLLN 119 Query: 121 ELRGTFFKRTFQTLIYLPHFMSWVIVVSISFVMTTMDGGIINELLSYFGFEKINFLLSPG 180 E+R FK+ QTLIY+PHFMSWVIVVS+SFV+ T+DGG+INEL+ +FG EKINFLL+ Sbjct: 120 EVRIALFKKFVQTLIYIPHFMSWVIVVSLSFVLLTVDGGLINELIVFFGGEKINFLLNEE 179 Query: 181 WFRPMYIIQIIWREAGWGTIIYLASIAAIDPGLYEAARMDGAGRLRQIWHITLPAIRGVI 240 WFRP+YI+Q+IWREAGW TIIYLA+I A+DP LYEAA+MDGAGRLRQ+WHITLPAI+ VI Sbjct: 180 WFRPLYILQVIWREAGWSTIIYLAAITAVDPQLYEAAKMDGAGRLRQMWHITLPAIKSVI 239 Query: 241 VTLLILKIGSVLDLGFEHVYLLLNSMNREVAEIIDTYVYTAGLRQGHFSYSTAIGFFKSI 300 V LLILKIG L+LGFEHVYLLLN+ NREVAEI DTYVYTAGL+QG FSYSTA+G FK+ Sbjct: 240 VVLLILKIGDTLELGFEHVYLLLNATNREVAEIFDTYVYTAGLKQGQFSYSTAVGVFKAA 299 Query: 301 IGLVMVMSVNKLSKKMGEEGVY 322 +GL++VM N+L+KK GEEG+Y Sbjct: 300 VGLILVMLANRLAKKFGEEGIY 321 >B4ANQ8.1 B4ANQ8_BACPU Protein LplB Length = 321 Score = 447 bits (1149), Expect = e-124, Method: Compositional matrix adjust. Identities = 215/321 (66%), Positives = 268/321 (83%), Gaps = 3/321 (0%) Query: 2 QEVSAQPGVVPELKPKSYKSSSELKKRLWRNKLLYVMLLPGVLYFVIFKYLPMYGLIISF 61 ++V+A+ LK + K L ++ K LYVM+LPG++YF++FKY+PM+GLII+F Sbjct: 4 EDVTAKGVPAAALKKERRK---RLLNQMLSQKFLYVMILPGLIYFLVFKYVPMWGLIIAF 60 Query: 62 QDYKPYQGITGSEWVGMEHFQRLFTEPDFLNILGNTLILFGMNILFYFPIPIILALMLNE 121 QDY+P+ GI GSEWVG +HF RLFTEP F +L NTLILF MN++ +FPIPI+LAL+LNE Sbjct: 61 QDYQPFLGILGSEWVGFKHFIRLFTEPTFFILLKNTLILFAMNVVIFFPIPILLALLLNE 120 Query: 122 LRGTFFKRTFQTLIYLPHFMSWVIVVSISFVMTTMDGGIINELLSYFGFEKINFLLSPGW 181 +R FK+ QT+IY+PHFMSWVIVVS+SFV+ T+DGG+INEL+++FG EKINFLLS W Sbjct: 121 VRLALFKKFVQTMIYIPHFMSWVIVVSLSFVLLTVDGGLINELIAFFGGEKINFLLSQEW 180 Query: 182 FRPMYIIQIIWREAGWGTIIYLASIAAIDPGLYEAARMDGAGRLRQIWHITLPAIRGVIV 241 FRPMYI+Q+IWREAGW TIIYLA+I A+DP LYEAA+MDGAGRLRQ+WHITLPAI+ VIV Sbjct: 181 FRPMYILQVIWREAGWSTIIYLAAITAVDPQLYEAAKMDGAGRLRQMWHITLPAIKSVIV 240 Query: 242 TLLILKIGSVLDLGFEHVYLLLNSMNREVAEIIDTYVYTAGLRQGHFSYSTAIGFFKSII 301 LLILKIG L+LGFEHVYLLLN+ NREVAEI DTYVYTAGL+QG FSYSTA+G FK+ + Sbjct: 241 VLLILKIGDTLELGFEHVYLLLNATNREVAEIFDTYVYTAGLKQGQFSYSTAVGLFKAAV 300 Query: 302 GLVMVMSVNKLSKKMGEEGVY 322 GL++VM N+L+KK GEEG+Y Sbjct: 301 GLILVMLANRLAKKFGEEGIY 321 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.145 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,940,284,765 Number of extensions: 82848059 Number of successful extensions: 271351 Number of sequences better than 1.0e-05: 5278 Number of HSP's gapped: 266226 Number of HSP's successfully gapped: 5278 Length of query: 322 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 186 Effective length of database: 1,779,438,163 Effective search space: 330975498318 Effective search space used: 330975498318 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)