BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0008.p (194 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3HC46.1 C3HC46_BACTU Transcriptional regulator, TetR 348 1e-94 C3C4G0.1 C3C4G0_BACTU Transcriptional regulator, TetR 346 5e-94 A0RAI9.1 A0RAI9_BACAH Transcriptional regulator, TetR family 346 6e-94 C2NDJ7.1 C2NDJ7_BACCE Transcriptional regulator, TetR 346 6e-94 C2QV92.1 C2QV92_BACCE Transcriptional regulator, TetR 346 7e-94 >C3HC46.1 C3HC46_BACTU Transcriptional regulator, TetR Length = 194 Score = 348 bits (893), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 165/194 (85%), Positives = 180/194 (92%) Query: 1 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFADKEELLAGVVD 60 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHF++KE+LL GVVD Sbjct: 1 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFSNKEQLLEGVVD 60 Query: 61 YWIETYERAMDQILSQNQLSVEDRVQMFLKHLSQGVQSREYKGSCPFITLYIQTPAQATH 120 YWIE Y+ A+D +LSQNQ VEDR+Q+FLK LSQGVQSREYKGSCPFITLYIQ+P QAT Sbjct: 61 YWIEMYQSAIDDVLSQNQFLVEDRIQLFLKQLSQGVQSREYKGSCPFITLYIQSPTQATQ 120 Query: 121 IKEKIGLFFTGLQMKISLLLQQGAEKGEFRDTIHIDEVAALFITNLEGALFLAETLKDAT 180 IKEKIGLFFTGLQ K+SLLL+QG E GEFR+TIHIDEVA+LFITNLEGALF++ETLKDAT Sbjct: 121 IKEKIGLFFTGLQEKVSLLLKQGVENGEFRNTIHIDEVASLFITNLEGALFISETLKDAT 180 Query: 181 VITKTASHFFNLLR 194 VITKTA HFF LLR Sbjct: 181 VITKTADHFFKLLR 194 >C3C4G0.1 C3C4G0_BACTU Transcriptional regulator, TetR Length = 194 Score = 346 bits (888), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 165/194 (85%), Positives = 179/194 (92%) Query: 1 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFADKEELLAGVVD 60 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHF++KE+LL GVVD Sbjct: 1 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFSNKEQLLEGVVD 60 Query: 61 YWIETYERAMDQILSQNQLSVEDRVQMFLKHLSQGVQSREYKGSCPFITLYIQTPAQATH 120 YWIE Y+ A+D ILSQNQ VEDR+Q+FLK LSQGVQSREYKGSCPFITLYIQ+P QAT Sbjct: 61 YWIEMYQSAIDDILSQNQFLVEDRIQLFLKQLSQGVQSREYKGSCPFITLYIQSPTQATQ 120 Query: 121 IKEKIGLFFTGLQMKISLLLQQGAEKGEFRDTIHIDEVAALFITNLEGALFLAETLKDAT 180 IKEKIGLFFTGLQ K+SLLL+QG E GEFR+TIHIDEVA+LFITNLEGALF++ETLKDAT Sbjct: 121 IKEKIGLFFTGLQKKMSLLLKQGVENGEFRNTIHIDEVASLFITNLEGALFISETLKDAT 180 Query: 181 VITKTASHFFNLLR 194 VITKTA HF LLR Sbjct: 181 VITKTADHFLKLLR 194 >A0RAI9.1 A0RAI9_BACAH Transcriptional regulator, TetR family Length = 194 Score = 346 bits (888), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 164/194 (84%), Positives = 179/194 (92%) Query: 1 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFADKEELLAGVVD 60 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHF++KE+LL GVVD Sbjct: 1 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFSNKEQLLEGVVD 60 Query: 61 YWIETYERAMDQILSQNQLSVEDRVQMFLKHLSQGVQSREYKGSCPFITLYIQTPAQATH 120 YWIE Y+ A+D +LSQNQ VEDR+Q+FLK LSQGVQSREYKGSCPFITLYIQ+P QAT Sbjct: 61 YWIEMYQSAIDDVLSQNQFLVEDRIQLFLKQLSQGVQSREYKGSCPFITLYIQSPTQATQ 120 Query: 121 IKEKIGLFFTGLQMKISLLLQQGAEKGEFRDTIHIDEVAALFITNLEGALFLAETLKDAT 180 IKEKIGLFFTGLQ K+SLLL+QG E GEFR+TIHIDEVA+LFITNLEGALF++ETLKDAT Sbjct: 121 IKEKIGLFFTGLQEKVSLLLKQGVENGEFRNTIHIDEVASLFITNLEGALFISETLKDAT 180 Query: 181 VITKTASHFFNLLR 194 VITKTA HF LLR Sbjct: 181 VITKTADHFLKLLR 194 >C2NDJ7.1 C2NDJ7_BACCE Transcriptional regulator, TetR Length = 194 Score = 346 bits (888), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 164/194 (84%), Positives = 179/194 (92%) Query: 1 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFADKEELLAGVVD 60 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHF++KE+LL GVVD Sbjct: 1 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFSNKEQLLEGVVD 60 Query: 61 YWIETYERAMDQILSQNQLSVEDRVQMFLKHLSQGVQSREYKGSCPFITLYIQTPAQATH 120 YWIE Y+ A+D +LSQNQ VEDR+Q+FLK LSQGVQSREYKGSCPFITLYIQ+P QAT Sbjct: 61 YWIEMYQSAIDDVLSQNQFLVEDRIQLFLKQLSQGVQSREYKGSCPFITLYIQSPTQATQ 120 Query: 121 IKEKIGLFFTGLQMKISLLLQQGAEKGEFRDTIHIDEVAALFITNLEGALFLAETLKDAT 180 IKEKIGLFFTGLQ K+SLLL+QG E GEFR+TIHIDEVA+LFITNLEGALF++ETLKDAT Sbjct: 121 IKEKIGLFFTGLQEKVSLLLKQGVENGEFRNTIHIDEVASLFITNLEGALFISETLKDAT 180 Query: 181 VITKTASHFFNLLR 194 VITKTA HF LLR Sbjct: 181 VITKTADHFLKLLR 194 >C2QV92.1 C2QV92_BACCE Transcriptional regulator, TetR Length = 194 Score = 346 bits (887), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 164/194 (84%), Positives = 179/194 (92%) Query: 1 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFADKEELLAGVVD 60 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHF++KE+LL GVVD Sbjct: 1 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFSNKEQLLEGVVD 60 Query: 61 YWIETYERAMDQILSQNQLSVEDRVQMFLKHLSQGVQSREYKGSCPFITLYIQTPAQATH 120 YWIE Y+ A+D +LSQNQ VEDR+Q+FLK LSQGVQSREYKGSCPFITLYIQ+P QAT Sbjct: 61 YWIEMYQSAIDDVLSQNQFLVEDRIQLFLKQLSQGVQSREYKGSCPFITLYIQSPTQATQ 120 Query: 121 IKEKIGLFFTGLQMKISLLLQQGAEKGEFRDTIHIDEVAALFITNLEGALFLAETLKDAT 180 IKEKIGLFFTGLQ K+SLLL+QG E GEFR+TIHIDEVA+LFITNLEGALF++ETLKDAT Sbjct: 121 IKEKIGLFFTGLQKKMSLLLKQGVENGEFRNTIHIDEVASLFITNLEGALFISETLKDAT 180 Query: 181 VITKTASHFFNLLR 194 VITKTA HF LLR Sbjct: 181 VITKTADHFLKLLR 194 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.135 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 960,818,285 Number of extensions: 34035569 Number of successful extensions: 104411 Number of sequences better than 1.0e-05: 654 Number of HSP's gapped: 104957 Number of HSP's successfully gapped: 654 Length of query: 194 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 66 Effective length of database: 1,854,806,283 Effective search space: 122417214678 Effective search space used: 122417214678 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)