BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0010.p
         (114 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D6X3.1 B1D6X3_9BACL Lj965 prophage protein                          107   5e-22
B9WVE0.1 B9WVE0_STRSU Putative uncharacterized protein                 92   2e-17
Q65PT0.1 Q65PT0_LACJO Lj965 prophage protein                           91   5e-17
Q6SE69.1 Q6SE69_9CAUD Putative uncharacterized protein                 91   5e-17
A5MWJ2.1 A5MWJ2_STRPN Putative uncharacterized protein                 89   1e-16

>B1D6X3.1 B1D6X3_9BACL Lj965 prophage protein
          Length = 108

 Score =  107 bits (266), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 71/105 (67%)

Query: 10  PSPTKYQVYIQDLSKGERNVNGLLLLERIATKRKIDLSWKMLSPSQYATILRLVSPVFFN 69
           PSP  Y V  QDL K  RN  G ++ E IATK KIDL W  LS +  A +L+ VS  FF+
Sbjct: 4   PSPGGYTVTKQDLVKSNRNARGTMIKELIATKDKIDLQWVYLSAADLAKLLQAVSGNFFD 63

Query: 70  VQYQDPEDATTRSGTFYAGDRSIGALNYTNGIVQYNELSFSIIER 114
           V+Y +P++   R+ +FYAGDRS  A++Y NGI++Y ++ F++IER
Sbjct: 64  VKYLNPQNGLFRTASFYAGDRSAPAMDYINGIIRYKDVKFNLIER 108


>B9WVE0.1 B9WVE0_STRSU Putative uncharacterized protein
          Length = 116

 Score = 91.7 bits (226), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 4/113 (3%)

Query: 4   INGVTLPSPTKYQVYIQDLSKGE--RNVNGLLLLERIATKRKIDLSWKMLSPSQYATILR 61
           INGVT+  P  +QV I D+  GE  RN NG ++ +RI TKRK++  W ML+ ++ A I  
Sbjct: 6   INGVTVVPPKSFQVAINDVD-GETGRNANGDMVRDRITTKRKLECDWGMLTQAEMAQIQN 64

Query: 62  LVSPVFFNVQYQDPEDATTRSGTFYAGDRSIGALNYTNGIVQYNELSFSIIER 114
            V PVFF V Y DP    T S TFY GDR+  A ++   +  ++ L FS+IER
Sbjct: 65  AVQPVFFEVSYPDPILGQT-SKTFYVGDRTAPAYSFDEKLKPWSGLKFSLIER 116


>Q65PT0.1 Q65PT0_LACJO Lj965 prophage protein
          Length = 118

 Score = 90.5 bits (223), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 2/115 (1%)

Query: 2   ISINGVTL-PSPTKYQVYIQDL-SKGERNVNGLLLLERIATKRKIDLSWKMLSPSQYATI 59
           + I+G  + P+P   QV IQD+ +K  R+  GLL  +R+ATKRKI L++  L+  + A I
Sbjct: 4   LKISGTVVNPAPQTMQVTIQDIDAKATRDAQGLLHRDRVATKRKITLAFGALTVPECAKI 63

Query: 60  LRLVSPVFFNVQYQDPEDATTRSGTFYAGDRSIGALNYTNGIVQYNELSFSIIER 114
           L  V   FF V Y DP+D   RSGTFY GDR+    ++ + +  +  LSF +IE+
Sbjct: 64  LGAVKSEFFIVDYLDPQDGNMRSGTFYVGDRTTPVYSFVDSVPVWKGLSFDLIEQ 118


>Q6SE69.1 Q6SE69_9CAUD Putative uncharacterized protein
          Length = 118

 Score = 90.5 bits (223), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 2/115 (1%)

Query: 2   ISINGVTL-PSPTKYQVYIQDL-SKGERNVNGLLLLERIATKRKIDLSWKMLSPSQYATI 59
           + I+G  + P+P   QV IQD+ +K  R+  GLL  +R+ATKRKI L++  L+  + A I
Sbjct: 4   LKISGTVVNPAPQTMQVTIQDIDAKATRDAQGLLHRDRVATKRKITLAFGALTVPECAKI 63

Query: 60  LRLVSPVFFNVQYQDPEDATTRSGTFYAGDRSIGALNYTNGIVQYNELSFSIIER 114
           L  V   FF V Y DP+D   RSGTFY GDR+    ++ + +  +  LSF +IE+
Sbjct: 64  LGAVKSEFFIVDYLDPQDGNMRSGTFYVGDRTTPVYSFVDSVPVWKGLSFDLIEQ 118


>A5MWJ2.1 A5MWJ2_STRPN Putative uncharacterized protein
          Length = 116

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 69/115 (60%), Gaps = 4/115 (3%)

Query: 2   ISINGVTLPSPTKYQVYIQDLSKGE--RNVNGLLLLERIATKRKIDLSWKMLSPSQYATI 59
           ++INGV +  P  +QV IQD+  GE  RN NG ++ +RI TKRK+D  W M++  + + +
Sbjct: 4   LTINGVAVKPPKSFQVGIQDID-GETGRNANGDMVRDRITTKRKLDCEWGMMTQGEISQL 62

Query: 60  LRLVSPVFFNVQYQDPEDATTRSGTFYAGDRSIGALNYTNGIVQYNELSFSIIER 114
           L  VS  FF V Y DP D    + TFY GDR+  +  +T  +  ++   F+++ER
Sbjct: 63  LHAVSSKFFEVSYPDPMDGQV-TKTFYVGDRTAPSYTFTEKLKPWSGAKFNLVER 116


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 677,045,039
Number of extensions: 24951305
Number of successful extensions: 50814
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 50796
Number of HSP's successfully gapped: 18
Length of query: 114
Length of database: 3,060,696,203
Length adjustment: 81
Effective length of query: 33
Effective length of database: 2,297,593,988
Effective search space: 75820601604
Effective search space used: 75820601604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)