BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0008.p
         (100 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B8I116.1 B8I116_CLOCE Putative uncharacterized protein                150   3e-35
B8I8Z6.1 B8I8Z6_CLOCE Putative uncharacterized protein                150   3e-35
B1RBA3.1 B1RBA3_CLOPE Putative uncharacterized protein                100   5e-20
Q0TSH9.1 Q0TSH9_CLOP1 Putative uncharacterized protein                 80   6e-14
C2KWF8.1 C2KWF8_9FIRM Putative uncharacterized protein                 75   2e-12

>B8I116.1 B8I116_CLOCE Putative uncharacterized protein
          Length = 128

 Score =  150 bits (380), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/99 (70%), Positives = 82/99 (82%)

Query: 1   VEASLAKQYGIRIRQHGDMPWDEFCSLIAGLMPDTPLGSIVTIRSEKDPKVIKSFSADQR 60
           +EASLA QYGIRIRQH DMPWDEFC+L+AGLMPDTPLG+IVTIRSEKD KVIK+F+  QR
Sbjct: 27  IEASLATQYGIRIRQHTDMPWDEFCTLVAGLMPDTPLGNIVTIRSEKDRKVIKNFTPSQR 86

Query: 61  RIYNDWRNRQAKLKLLDEVALDNQMKRLEATMARMFGGG 99
           +IYNDWR ++A  +L +   LD +MK LE   ARMFGGG
Sbjct: 87  KIYNDWRLKRANKQLDNPNVLDQKMKDLEMEFARMFGGG 125


>B8I8Z6.1 B8I8Z6_CLOCE Putative uncharacterized protein
          Length = 136

 Score =  150 bits (379), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/99 (70%), Positives = 82/99 (82%)

Query: 1   VEASLAKQYGIRIRQHGDMPWDEFCSLIAGLMPDTPLGSIVTIRSEKDPKVIKSFSADQR 60
           +EASLA QYGIRIRQH DMPWDEFC+L+AGLMPDTPLG+IVTIRSEKD KVIK+F+  QR
Sbjct: 35  IEASLATQYGIRIRQHTDMPWDEFCTLVAGLMPDTPLGNIVTIRSEKDRKVIKNFTPSQR 94

Query: 61  RIYNDWRNRQAKLKLLDEVALDNQMKRLEATMARMFGGG 99
           +IYNDWR ++A  +L +   LD +MK LE   ARMFGGG
Sbjct: 95  KIYNDWRLKRANKQLDNPNVLDQKMKDLEMEFARMFGGG 133


>B1RBA3.1 B1RBA3_CLOPE Putative uncharacterized protein
          Length = 120

 Score =  100 bits (249), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 56/72 (77%)

Query: 1  VEASLAKQYGIRIRQHGDMPWDEFCSLIAGLMPDTPLGSIVTIRSEKDPKVIKSFSADQR 60
          +EAS   QYGIR+R   DM WDEFC+L++G+M  TPLG IV+IRSE+D  ++K+F+ +Q 
Sbjct: 26 IEASFTAQYGIRLRNESDMTWDEFCTLLSGIMSKTPLGQIVSIRSEEDENMLKNFTEEQH 85

Query: 61 RIYNDWRNRQAK 72
          RI N+WR+RQ +
Sbjct: 86 RIRNEWRSRQVE 97


>Q0TSH9.1 Q0TSH9_CLOP1 Putative uncharacterized protein
          Length = 77

 Score = 80.1 bits (196), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 45/54 (83%)

Query: 19 MPWDEFCSLIAGLMPDTPLGSIVTIRSEKDPKVIKSFSADQRRIYNDWRNRQAK 72
          M WDEFC+L++G+MP TPLG IV+IRSE+D  ++K+F+ +Q RI N+WR+RQ +
Sbjct: 1  MTWDEFCTLLSGIMPKTPLGQIVSIRSEEDENMLKNFTEEQHRIRNEWRSRQVE 54


>C2KWF8.1 C2KWF8_9FIRM Putative uncharacterized protein
          Length = 98

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 3  ASLAKQYGIRI--RQHGDMPWDEFCSLIAGLMPDTPLGSIVTIRSEKDPKVIKSFSADQR 60
          +S   QYG+R+  +    + W EF +L++GL  DT LG +V IRSE D + IK FS+ Q+
Sbjct: 4  SSFLSQYGLRLSTKDFKTVDWAEFSALLSGLSADTALGKVVAIRSETDQETIKRFSSYQK 63

Query: 61 RIYNDWRNRQAKLKLLDEVALD 82
          +IY+DWR +Q++    +E A +
Sbjct: 64 KIYDDWRTKQSERMTEEEYAAE 85


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 562,625,162
Number of extensions: 18822581
Number of successful extensions: 46338
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 46338
Number of HSP's successfully gapped: 6
Length of query: 100
Length of database: 3,060,696,203
Length adjustment: 69
Effective length of query: 31
Effective length of database: 2,410,646,168
Effective search space: 74730031208
Effective search space used: 74730031208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)