BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0007.p
         (102 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B8I117.1 B8I117_CLOCE Putative uncharacterized protein                 97   4e-19

>B8I117.1 B8I117_CLOCE Putative uncharacterized protein
          Length = 101

 Score = 97.4 bits (241), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 71/102 (69%), Gaps = 1/102 (0%)

Query: 1   MTNIVNITDKFTKEDKGILQIGNKKYEIDKSVEAVMRFEELADDQRVKAVVAALEGALGE 60
           M+ ++NITDK +KE   I QIG+K Y +D ++  V++FEELA+     A+V A+  ALG 
Sbjct: 1   MSKVINITDKLSKEKPSI-QIGDKTYSVDDTITNVLKFEELANIGTSSAMVEAISLALGS 59

Query: 61  KASKEIGVRKMGAENLKVLLSGVTAAMQGISFEEVAARFQQQ 102
           KA+KE+ V KM  ++ KVL + V AAMQ + +EE AARFQ++
Sbjct: 60  KAAKELSVEKMTIQSFKVLATAVIAAMQDMEYEEAAARFQKK 101


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.130    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 463,211,831
Number of extensions: 14785740
Number of successful extensions: 46063
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 46062
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 3,060,696,203
Length adjustment: 70
Effective length of query: 32
Effective length of database: 2,401,225,153
Effective search space: 76839204896
Effective search space used: 76839204896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)