BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0005.p
         (129 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B8I8Z9.1 B8I8Z9_CLOCE Putative uncharacterized protein                202   9e-51
B8I119.1 B8I119_CLOCE Putative uncharacterized protein                192   6e-48
Q0TSI2.1 Q0TSI2_CLOP1 Putative uncharacterized protein                169   6e-41
B1RBA6.1 B1RBA6_CLOPE Putative uncharacterized protein                167   4e-40
B7AR40.1 B7AR40_9BACE Putative uncharacterized protein                101   3e-20

>B8I8Z9.1 B8I8Z9_CLOCE Putative uncharacterized protein
          Length = 132

 Score =  202 bits (513), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 92/129 (71%), Positives = 107/129 (82%)

Query: 1   MMTLAAVRDWLKTQVDCQNWYIGKADTSKQQCISLYNINNGTPVLAIGGLDNTSYAVKAV 60
           MMTLA V+DWLKTQ+ C NWYI K D SK+QCI +Y++   TPV+A+GG++NTSYA KA+
Sbjct: 1   MMTLAEVKDWLKTQISCPNWYISKIDGSKEQCIGIYSVAGPTPVIALGGIENTSYATKAI 60

Query: 61  SILVHWSKNADTAERKAQEVYAALFGQSAVIGGKRVINFQLRTPEPVSVGTDDAGIYEYV 120
           SILVHW KNAD AE+KAQEVY  +FGQSA IGGKRVI F +RTPEPVSVGTDD  I+EYV
Sbjct: 61  SILVHWGKNADIAEQKAQEVYNCMFGQSAEIGGKRVIQFNMRTPEPVSVGTDDNNIFEYV 120

Query: 121 IEFTIYYER 129
           IE  IYYER
Sbjct: 121 IETVIYYER 129


>B8I119.1 B8I119_CLOCE Putative uncharacterized protein
          Length = 136

 Score =  192 bits (489), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 88/130 (67%), Positives = 106/130 (81%), Gaps = 1/130 (0%)

Query: 1   MMTLAAVRDWLKTQV-DCQNWYIGKADTSKQQCISLYNINNGTPVLAIGGLDNTSYAVKA 59
           MMTLA V+DWLKTQ+  C NWYIGK D SK+QCI +YN+    P++A+GG++NTSYA KA
Sbjct: 1   MMTLAEVKDWLKTQIISCPNWYIGKIDGSKEQCIGIYNVAGPPPMIALGGIENTSYATKA 60

Query: 60  VSILVHWSKNADTAERKAQEVYAALFGQSAVIGGKRVINFQLRTPEPVSVGTDDAGIYEY 119
           +SIL+HW KNAD AE+KAQEVY  +FGQSA IGGKRVI F +RT EPVSVGTDD  I+EY
Sbjct: 61  ISILIHWGKNADIAEQKAQEVYNCMFGQSAEIGGKRVIQFNMRTSEPVSVGTDDNNIFEY 120

Query: 120 VIEFTIYYER 129
           VIE  I+YE+
Sbjct: 121 VIETVIFYEK 130


>Q0TSI2.1 Q0TSI2_CLOP1 Putative uncharacterized protein
          Length = 128

 Score =  169 bits (429), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 77/128 (60%), Positives = 100/128 (78%)

Query: 2   MTLAAVRDWLKTQVDCQNWYIGKADTSKQQCISLYNINNGTPVLAIGGLDNTSYAVKAVS 61
           M L+ VR++LKT+++C  WYIGK D +K+QCI +Y+I      +A+GGL+NTSY+ KA+S
Sbjct: 1   MLLSEVREYLKTKIECPQWYIGKIDATKEQCIGIYSIRGPRNHIALGGLENTSYSTKAIS 60

Query: 62  ILVHWSKNADTAERKAQEVYAALFGQSAVIGGKRVINFQLRTPEPVSVGTDDAGIYEYVI 121
           ILVHW KNA+ AE+KAQEV+  LFGQ AVIGGKRVI+F++ T EP+ VGTD   IYEYVI
Sbjct: 61  ILVHWGKNANIAEQKAQEVFNVLFGQDAVIGGKRVIDFKMITTEPIGVGTDKNNIYEYVI 120

Query: 122 EFTIYYER 129
           E  I +ER
Sbjct: 121 EVNIIHER 128


>B1RBA6.1 B1RBA6_CLOPE Putative uncharacterized protein
          Length = 128

 Score =  167 bits (422), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 75/128 (58%), Positives = 100/128 (78%)

Query: 2   MTLAAVRDWLKTQVDCQNWYIGKADTSKQQCISLYNINNGTPVLAIGGLDNTSYAVKAVS 61
           M L+ VR++LK++++C  WYIGK D +K+QCI +Y+I      +A+GGL NTSY+ KA+S
Sbjct: 1   MLLSEVREYLKSKIECPQWYIGKIDATKEQCIGIYSIRGPRNHIALGGLGNTSYSTKAIS 60

Query: 62  ILVHWSKNADTAERKAQEVYAALFGQSAVIGGKRVINFQLRTPEPVSVGTDDAGIYEYVI 121
           IL+HW KNA+ AE+KAQEV+ AL GQ+AVIGGKRVI+F++ T EP+ VGTD   IYEYVI
Sbjct: 61  ILIHWGKNANIAEQKAQEVFNALLGQNAVIGGKRVIDFKMITTEPIGVGTDKNNIYEYVI 120

Query: 122 EFTIYYER 129
           E  I +ER
Sbjct: 121 EVNIIHER 128


>B7AR40.1 B7AR40_9BACE Putative uncharacterized protein
          Length = 133

 Score =  101 bits (251), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 2/131 (1%)

Query: 1   MMTLAAVRDWLKTQVDCQNWYIGKADTSKQQCISLYN-INNGTPVLAIGGLDNTSYAVKA 59
           M++L  +R+++ +    +N YIGK D  K + I +YN   +G P   +GG +  +Y +K 
Sbjct: 1   MLSLKDIREYVDSLGIAENVYIGKMDNKKPKSIGVYNRPASGPPRTTLGGPEYGTYRIKP 60

Query: 60  VSILVHWSKNADTAERKAQEVYAALFGQSAV-IGGKRVINFQLRTPEPVSVGTDDAGIYE 118
           VS+L+HW+KN D AE+ A  ++  + G S + I    V   QL+ PEP  VGTDDAGIYE
Sbjct: 61  VSLLIHWNKNKDEAEKAAFSLFEQMEGISGININNTDVRYIQLQVPEPQDVGTDDAGIYE 120

Query: 119 YVIEFTIYYER 129
           YVI     Y +
Sbjct: 121 YVIWLDFIYNK 131


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 785,310,857
Number of extensions: 29322901
Number of successful extensions: 61616
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 61612
Number of HSP's successfully gapped: 6
Length of query: 129
Length of database: 3,060,696,203
Length adjustment: 94
Effective length of query: 35
Effective length of database: 2,175,120,793
Effective search space: 76129227755
Effective search space used: 76129227755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)