BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0004.p
         (130 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B8I900.1 B8I900_CLOCE Putative uncharacterized protein                138   1e-31
B8I120.1 B8I120_CLOCE Putative uncharacterized protein                136   6e-31
B1RBA7.1 B1RBA7_CLOPE Putative uncharacterized protein                124   4e-27
Q0TSI3.1 Q0TSI3_CLOP1 Putative uncharacterized protein                121   2e-26
B7AR41.1 B7AR41_9BACE Putative uncharacterized protein                100   6e-20

>B8I900.1 B8I900_CLOCE Putative uncharacterized protein
          Length = 127

 Score =  138 bits (348), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/129 (48%), Positives = 89/129 (68%), Gaps = 4/129 (3%)

Query: 2   VKVKTKMNPRAMQRLSGAPARALELTIQGAKDSILSDIMAAEVVPKQTGELERSATIDAS 61
           ++V  KMN  A+ RLS A  +ALE+T +  K    SD+  +  +PKQTGELERSA +D S
Sbjct: 3   IRVNVKMNHAALGRLSNAQKQALEMTAEAVK----SDVTLSGTIPKQTGELERSAYVDTS 58

Query: 62  KSKRGKVTITYDTPYARRLYWHPEYSFRKDKNRHAQGEWLRAWAEGKKTRGVTKAFKELL 121
           +  +GK +I +DTPYAR+LYWHPEY FR DKN +AQG+W++ + +G K      AF++L 
Sbjct: 59  QISKGKTSIGFDTPYARKLYWHPEYDFRTDKNSNAQGKWMQTYVDGPKKNFAKNAFRKLY 118

Query: 122 KKLAGGFIR 130
           +KL GG ++
Sbjct: 119 RKLTGGVVK 127


>B8I120.1 B8I120_CLOCE Putative uncharacterized protein
          Length = 127

 Score =  136 bits (342), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 62/129 (48%), Positives = 89/129 (68%), Gaps = 4/129 (3%)

Query: 2   VKVKTKMNPRAMQRLSGAPARALELTIQGAKDSILSDIMAAEVVPKQTGELERSATIDAS 61
           ++V  KMN  A+ RLS A  +ALE+T +  K    SD+  +  +PK+TGELERSA +D S
Sbjct: 3   IRVNVKMNHAALGRLSNAQKQALEMTTEAVK----SDVTLSGTIPKETGELERSAYVDIS 58

Query: 62  KSKRGKVTITYDTPYARRLYWHPEYSFRKDKNRHAQGEWLRAWAEGKKTRGVTKAFKELL 121
           +  +GK +I +DTPYAR+LYWHPEY FR DKN +AQG+W++ + +G K      AF++L 
Sbjct: 59  QISKGKTSIGFDTPYARKLYWHPEYDFRTDKNPNAQGKWMQTYVDGPKKNFAKNAFRKLY 118

Query: 122 KKLAGGFIR 130
           +KL GG ++
Sbjct: 119 RKLTGGVVK 127


>B1RBA7.1 B1RBA7_CLOPE Putative uncharacterized protein
          Length = 127

 Score =  124 bits (310), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/128 (46%), Positives = 84/128 (65%), Gaps = 4/128 (3%)

Query: 3   KVKTKMNPRAMQRLSGAPARALELTIQGAKDSILSDIMAAEVVPKQTGELERSATIDASK 62
           KV  K++   +  L  A  +ALE T +    +ILSDI  + VVPK TGELERS  +D SK
Sbjct: 4   KVTIKLDRTKINTLINARNKALEETTE----AILSDIKTSAVVPKDTGELERSGFVDLSK 59

Query: 63  SKRGKVTITYDTPYARRLYWHPEYSFRKDKNRHAQGEWLRAWAEGKKTRGVTKAFKELLK 122
              G  +I +DTPYARRLYWHPEY+FR+DKN +AQG+W++++ +G     VT+ + + LK
Sbjct: 60  LDDGIASIIFDTPYARRLYWHPEYNFRQDKNINAQGKWMQSYIDGDNKEFVTETYFKFLK 119

Query: 123 KLAGGFIR 130
             + G I+
Sbjct: 120 IFSKGLIK 127


>Q0TSI3.1 Q0TSI3_CLOP1 Putative uncharacterized protein
          Length = 127

 Score =  121 bits (304), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/128 (45%), Positives = 84/128 (65%), Gaps = 4/128 (3%)

Query: 3   KVKTKMNPRAMQRLSGAPARALELTIQGAKDSILSDIMAAEVVPKQTGELERSATIDASK 62
           KV  K++   +  L  A  +ALE T +    ++LSDI  + +VPK TGELERS  +D SK
Sbjct: 4   KVTIKLDRTKINTLINARNKALEETTE----AMLSDIKTSAIVPKDTGELERSGFVDLSK 59

Query: 63  SKRGKVTITYDTPYARRLYWHPEYSFRKDKNRHAQGEWLRAWAEGKKTRGVTKAFKELLK 122
              G  +I +DTPYARRLYWHPEY+FR+DKN +AQG+W++++ +G     VT+ + + LK
Sbjct: 60  LDDGIASIIFDTPYARRLYWHPEYNFRQDKNINAQGKWMQSYIDGDNKEFVTETYFKFLK 119

Query: 123 KLAGGFIR 130
             + G I+
Sbjct: 120 IFSKGLIK 127


>B7AR41.1 B7AR41_9BACE Putative uncharacterized protein
          Length = 127

 Score =  100 bits (248), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/130 (41%), Positives = 81/130 (62%), Gaps = 8/130 (6%)

Query: 1   MVKVKT--KMNPRAMQRLSGAPARALELTIQGAKDSILSDIMAAEVVPKQTGELERSAT- 57
           MVKV +  K+N   + RL+ A ++ALE T     +++ ++++ A+V+P+ TG ++  +T 
Sbjct: 1   MVKVSSTVKINTGMINRLNAAVSKALEQT----GEALHTEVVQAQVMPRDTGAMQNESTF 56

Query: 58  IDASKSKRGKVTITYDTPYARRLYWHPEYSFRKDKNRHAQGEWLRAWAE-GKKTRGVTKA 116
           +D S+S  GKV+I   TPYARRLY+HPEY F K +N  A+G W   W E G +   V KA
Sbjct: 57  VDYSQSDSGKVSIVTSTPYARRLYYHPEYHFDKSENPDAKGNWYEDWMETGNRADFVPKA 116

Query: 117 FKELLKKLAG 126
           F    K+ AG
Sbjct: 117 FSSFYKREAG 126


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 720,811,599
Number of extensions: 25453259
Number of successful extensions: 72991
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 72984
Number of HSP's successfully gapped: 10
Length of query: 130
Length of database: 3,060,696,203
Length adjustment: 95
Effective length of query: 35
Effective length of database: 2,165,699,778
Effective search space: 75799492230
Effective search space used: 75799492230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)