BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0001.p (316 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7GIP5.1 B7GIP5_ANOFW L-alanoyl-D-glutamate peptidase-related pr... 175 6e-42 Q2B7L2.1 Q2B7L2_9BACI L-alanoyl-D-glutamate peptidase 173 2e-41 B1D4U2.1 B1D4U2_9BACL Peptidase M15B and M15C DD-carboxypeptidas... 168 7e-40 Q5QL26.1 Q5QL26_GEOKA Putative uncharacterized protein GKP41 166 3e-39 B7YEE2.1 B7YEE2_9BACI Peptidase M15B and M15C DD-carboxypeptidas... 165 5e-39 >B7GIP5.1 B7GIP5_ANOFW L-alanoyl-D-glutamate peptidase-related protein containing SLH domain Length = 213 Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 87/154 (56%), Positives = 107/154 (69%), Gaps = 9/154 (5%) Query: 2 LTLEQVKAKSAKRLDGLQPVVKAAATALIERCYAREVNIVITQGLRTIAEQDALYAQGRT 61 + L+++ K+ K+L G+ P V A A L+ Y + I+ITQGLRTI EQ+ALYAQGR Sbjct: 3 IGLKELLEKADKKLQGVHPTVAAKARQLVSLAYKEGIPIIITQGLRTIEEQNALYAQGRA 62 Query: 62 KPGQIVTNAKGGTSYHNYGLAIDFALLLPNGSSVSWDTTRDGDGDKVADWSEVVQEAKAL 121 KPG+IVTNAKGG SYHN+GLA DFA+L NG SV+W+ DK W V K+L Sbjct: 63 KPGKIVTNAKGGYSYHNFGLAFDFAILNANG-SVNWNVD-----DK---WKRVGAIGKSL 113 Query: 122 GFEWGGDWTNFKDLPHFQMVFGLSTAQLRAGKEP 155 G EWGGDWT+FKD PHFQ FGLS A LR+GK+P Sbjct: 114 GLEWGGDWTSFKDYPHFQYTFGLSLADLRSGKKP 147 >Q2B7L2.1 Q2B7L2_9BACI L-alanoyl-D-glutamate peptidase Length = 205 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 84/138 (60%), Positives = 98/138 (71%), Gaps = 1/138 (0%) Query: 18 LQPVVKAAATALIERCYAREVNIVITQGLRTIAEQDALYAQGRTKPGQIVTNAKGGTSYH 77 L PVV A LI + +NIVITQ R+I EQ+ LYA+GRT G+IVTNAKGG SYH Sbjct: 65 LHPVVSAKKDELISLAADKGINIVITQDFRSIEEQNELYAKGRTAEGEIVTNAKGGESYH 124 Query: 78 NYGLAIDFALLLPNGSSVSWDTTRDGDGDKVADWSEVVQEAKALGFEWGGDWTNFKDLPH 137 N+GLAIDFALL NG +V WD DG+G+ ADW EVV+ AK LGFEWGGDW +FKD PH Sbjct: 125 NFGLAIDFALLSLNG-AVIWDMNYDGNGNSRADWDEVVEIAKGLGFEWGGDWRSFKDYPH 183 Query: 138 FQMVFGLSTAQLRAGKEP 155 Q FGLS +L+ GK P Sbjct: 184 LQYDFGLSIWELQRGKRP 201 >B1D4U2.1 B1D4U2_9BACL Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin Length = 212 Score = 168 bits (425), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 81/155 (52%), Positives = 102/155 (65%), Gaps = 2/155 (1%) Query: 5 EQVKAKSAKRLDGLQPVVKAAATALIERCYAREVNIVITQGLRTIAEQDALYAQGRTKPG 64 EQ AKS + GL P+V A L+ + + I+IT R+ EQ+ LY +GR++PG Sbjct: 60 EQAPAKSTA-IAGLHPIVAEKADELVAQTGKLGIKIMITDDFRSSEEQNTLYKKGRSEPG 118 Query: 65 QIVTNAKGGTSYHNYGLAIDFALLLPNGSSVSWDTTRDGDGDKVADWSEVVQEAKALGFE 124 Q+VTN KGG SYHNYGLA+DFAL+ P+G V WD DG+G+ +DW EVV AK LGF Sbjct: 119 QVVTNVKGGASYHNYGLAVDFALVKPDG-DVIWDMEYDGNGNGKSDWMEVVSAAKKLGFA 177 Query: 125 WGGDWTNFKDLPHFQMVFGLSTAQLRAGKEPTAAQ 159 WGGDWT+FKD PH QM FG S L+ GK P A + Sbjct: 178 WGGDWTSFKDYPHLQMDFGYSIKDLQNGKRPPATE 212 >Q5QL26.1 Q5QL26_GEOKA Putative uncharacterized protein GKP41 Length = 156 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 83/161 (51%), Positives = 104/161 (64%), Gaps = 10/161 (6%) Query: 2 LTLEQVKAKSAKRLDGLQPVVKAAATALIERCYAREVNIVITQGLRTIAEQDALYAQGRT 61 + L ++ ++ KRL GL P+V A ALI + Y + I+ITQG RT+ EQ+ LYA GRT Sbjct: 1 MELVELLFRAEKRLSGLHPLVADKARALIRKAYEEGIYIIITQGFRTVEEQNRLYALGRT 60 Query: 62 KPGQIVTNAKGGTSYHNYGLAIDFALL-LPNGSSV-SWDTTRDGDGDKVADWSEVVQEAK 119 KPG+IVTNA+GG SYHN+GLA D + + G+ + SW R W V Q K Sbjct: 61 KPGRIVTNARGGYSYHNFGLAFDVCVCNVFKGTLIPSWSLDR--------RWFRVGQIGK 112 Query: 120 ALGFEWGGDWTNFKDLPHFQMVFGLSTAQLRAGKEPTAAQI 160 +LG EWGGDW +FKD PHFQ FGLS AQLRAGK P AA + Sbjct: 113 SLGLEWGGDWKSFKDYPHFQYTFGLSLAQLRAGKRPPAAVV 153 >B7YEE2.1 B7YEE2_9BACI Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin Length = 156 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 83/159 (52%), Positives = 102/159 (64%), Gaps = 10/159 (6%) Query: 2 LTLEQVKAKSAKRLDGLQPVVKAAATALIERCYAREVNIVITQGLRTIAEQDALYAQGRT 61 + L ++ ++ KRL GL P+V A ALI + Y + I+ITQG RTI EQ+ LYA GRT Sbjct: 1 MELVELLFRAEKRLSGLHPLVADKARALIRKAYEEGIYIIITQGFRTIEEQNRLYALGRT 60 Query: 62 KPGQIVTNAKGGTSYHNYGLAIDFALL-LPNGSSV-SWDTTRDGDGDKVADWSEVVQEAK 119 KPG+IVTNA+GG SYHN+GLA D + + G+ + SW R W V Q K Sbjct: 61 KPGRIVTNARGGYSYHNFGLAFDICVCNVFKGTLIPSWSLDR--------RWFRVGQIGK 112 Query: 120 ALGFEWGGDWTNFKDLPHFQMVFGLSTAQLRAGKEPTAA 158 +LG EWGGDW +FKD PHFQ FGLS AQLRAGK P A Sbjct: 113 SLGLEWGGDWKSFKDYPHFQYTFGLSLAQLRAGKRPPTA 151 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.127 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,542,686,923 Number of extensions: 57735696 Number of successful extensions: 195397 Number of sequences better than 1.0e-05: 100 Number of HSP's gapped: 195341 Number of HSP's successfully gapped: 100 Length of query: 316 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 181 Effective length of database: 1,788,859,178 Effective search space: 323783511218 Effective search space used: 323783511218 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)