BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0030.p (587 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8Q2.1 B3K8Q2_9BACI Phosphoesterase RecJ domain protein 807 0.0 B1DC38.1 B1DC38_9BACL Diguanylate cyclase and phosphoesterase 645 0.0 Q9K5Q7.1 Q9K5Q7_BACHD BH4031 protein 533 e-149 C0ZA43.1 C0ZA43_BREBN Putative uncharacterized protein yybT 525 e-147 B7GMU5.1 B7GMU5_ANOFW Predicted signaling protein consisting of ... 507 e-141 >B3K8Q2.1 B3K8Q2_9BACI Phosphoesterase RecJ domain protein Length = 666 Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/565 (69%), Positives = 479/565 (84%), Gaps = 2/565 (0%) Query: 2 LLLLLIIVVSFYNWVIGVASLFLAGTLCFSMLQAELSFRRNLVEYINGLSFRIKRVEGEA 61 L+LLL+I +SFYN ++G+ L LA ++ML+AE+ FRR LV+YI LSFRI+RVEGEA Sbjct: 20 LVLLLVIFLSFYNTILGLVGLLLAVVGGYAMLKAEMKFRRELVDYIGDLSFRIQRVEGEA 79 Query: 62 VSMLPLGIILYSEDRKVEWNNRSAGDIFSRKSLVGEEIEELLPDVMPSAAGHVPAKREAS 121 VS+LP GI+LYSED+ VEW+NR ++F ++ LVG ++EL P+++ +A + K++ Sbjct: 80 VSVLPFGIVLYSEDKTVEWHNRFVVNMFPQQPLVGASLQELFPELV-TALKEIQEKKDG- 137 Query: 122 KENALKEIRKEIAVDESHYQVVIIPSERLLYLYDITXXXXXXXXXXXXXXAIGIVMMDNL 181 KE KEIR EI+ ++ +Y +IP ERL+YL +IT A+GI+MMDN+ Sbjct: 138 KEKPPKEIRLEISHEDKYYGATVIPDERLIYLDEITELAVLRQRYEDERLALGIIMMDNI 197 Query: 182 DEAAQGMDDQQRTSLIAKVASEITEWSKQFEVYLRRLSSERYLMLLNHRSLQALEESRFV 241 DEA+QGMDDQQRT+LIAKV SEIT W+++F VYLRRLSS+RYLM+LNHRSL ALE SRF+ Sbjct: 198 DEASQGMDDQQRTALIAKVTSEITNWAREFNVYLRRLSSDRYLMMLNHRSLDALENSRFL 257 Query: 242 ILDEVREMTADLKVPMTLSIGLAYGSESASELGALAQSSLDMALGRGGDQAAVKAGQRLS 301 ILDEVREMTADLKVP+TLS+GLA+GS+ +ELG LAQSSLDMALGRGGDQAAVKAGQRLS Sbjct: 258 ILDEVREMTADLKVPLTLSVGLAFGSDDITELGQLAQSSLDMALGRGGDQAAVKAGQRLS 317 Query: 302 FYGGKSNAAEKRTRVRARVIAHALRDLMQESDRVLIMGHRTPDIDAVGASIGLLKAAQMY 361 FYGGKSNA EKRTRVRARVI+HALRDLMQESD+V+IMGH+ PD+D VGA+IG+LKAAQMY Sbjct: 318 FYGGKSNAVEKRTRVRARVISHALRDLMQESDKVIIMGHKLPDMDVVGAAIGILKAAQMY 377 Query: 362 NVEANIVMETPNPSITRMMEQIRRDEGLNKSFISTEQALQVMTEHTLLIVVDTHKASMTM 421 VEA IVME NPSI+R+ME++R+DE L FISTEQ++Q+MTEHTLL+VVDTHKASMTM Sbjct: 378 KVEAYIVMEGMNPSISRIMEEVRKDEALMSRFISTEQSMQMMTEHTLLVVVDTHKASMTM 437 Query: 422 EPRLVQYASRIVVVDHHRRGEEFINDAVLVYLEPYASSTCELVTELLQYIHDKIKLSPLE 481 EPRLV ASR+VV+DHHRRGEEFINDAVL+YLEPYASSTCELVTE+LQYIHD++ L+P+E Sbjct: 438 EPRLVHRASRVVVMDHHRRGEEFINDAVLIYLEPYASSTCELVTEVLQYIHDRVSLTPVE 497 Query: 482 ATMLLAGITVDTKHFALHTGSRTFEAAGFLRRVGADTILIQRMLKEDLQEYISKAEIIKH 541 AT LLAGITVDTKHFALHTGSRTFEAAGFLRR GADT++IQR+LKEDL E+I+KAEI+KH Sbjct: 498 ATALLAGITVDTKHFALHTGSRTFEAAGFLRRHGADTMMIQRVLKEDLTEFIAKAEIVKH 557 Query: 542 ARMVYDHIALVVTEPGMKIPQLLIA 566 A+MV+DHIA+ V + G +PQLLIA Sbjct: 558 AKMVFDHIAIAVAKSGEPMPQLLIA 582 >B1DC38.1 B1DC38_9BACL Diguanylate cyclase and phosphoesterase Length = 653 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/565 (55%), Positives = 420/565 (74%), Gaps = 15/565 (2%) Query: 2 LLLLLIIVVSFYNWVIGVASLFLAGTLCFSMLQAELSFRRNLVEYINGLSFRIKRVEGEA 61 L++L+ +V++++ WV+G+ +L L + AE +FR++L Y+ LS+R+K+V + Sbjct: 20 LMVLMTVVLTWFWWVLGLIALLLTIAAAVYTVLAERAFRKDLRSYLGTLSYRVKKVGNDV 79 Query: 62 VSMLPLGIILYSEDRKVEWNNRSAGDIFSRKSLVGEEIEELLPDVMPSAAGHVPAKREAS 121 + LP G+ILY+EDR VEW+N I +S++G + EL P A Sbjct: 80 IGELPFGVILYNEDRTVEWHNPYIAQIAGEESVIGMPLTELFP---------------AL 124 Query: 122 KENALKEIRKEIAVDESHYQVVIIPSERLLYLYDITXXXXXXXXXXXXXXAIGIVMMDNL 181 ++ KE E VD YQ++ ER+LY+ DIT A+G+VM+D+L Sbjct: 125 QQVKDKEGTVEATVDGHVYQLLFKQKERILYVQDITLLWQLSKRYDEEKLAMGVVMIDSL 184 Query: 182 DEAAQGMDDQQRTSLIAKVASEITEWSKQFEVYLRRLSSERYLMLLNHRSLQALEESRFV 241 +E QGMDD QR+SL +KV +EITEW++++++YL+R++S+R+L++ + ++L+ LE+SRFV Sbjct: 185 EEVTQGMDDHQRSSLQSKVTTEITEWAQRYQLYLKRVTSDRFLLITDQKTLRQLEQSRFV 244 Query: 242 ILDEVREMTADLKVPMTLSIGLAYGSESASELGALAQSSLDMALGRGGDQAAVKAGQRLS 301 ILDEVREMTAD K+P+TLSIG A G+ES ELG AQSSLD+ALGRGGDQA+VK G R S Sbjct: 245 ILDEVREMTADQKIPITLSIGFAAGAESIVELGQWAQSSLDIALGRGGDQASVKVGGRQS 304 Query: 302 FYGGKSNAAEKRTRVRARVIAHALRDLMQESDRVLIMGHRTPDIDAVGASIGLLKAAQMY 361 FYGGK+NA EKRTRVRARV+AHALRDL++ES V+IMGH+ PD+DA+GA+IG+LKAA M+ Sbjct: 305 FYGGKTNAVEKRTRVRARVVAHALRDLIKESGNVVIMGHKMPDMDAIGAAIGILKAALMF 364 Query: 362 NVEANIVMETPNPSITRMMEQIRRDEGLNKSFISTEQALQVMTEHTLLIVVDTHKASMTM 421 EA IV+E NP+I +MME +R DE K FI+ EQAL + TL +VVDTHKASM Sbjct: 365 GKEAYIVLEGINPAIQKMMEMLREDEKFTKRFITPEQALGITDGRTLAVVVDTHKASMVK 424 Query: 422 EPRLVQYASRIVVVDHHRRGEEFINDAVLVYLEPYASSTCELVTELLQYIHDKIKLSPLE 481 EPR++ ++IVVVDHHRRGEEFI++A+LVY+EPYASSTCELVTELLQYIHD++ L E Sbjct: 425 EPRILAQTNKIVVVDHHRRGEEFISNAILVYMEPYASSTCELVTELLQYIHDRVLLDVRE 484 Query: 482 ATMLLAGITVDTKHFALHTGSRTFEAAGFLRRVGADTILIQRMLKEDLQEYISKAEIIKH 541 AT LLAGITVDTK+F+L TG+RTF+AA FLRR GAD+ +IQRMLKEDL+EY+ KAEIIKH Sbjct: 485 ATALLAGITVDTKNFSLRTGARTFDAASFLRRNGADSTMIQRMLKEDLEEYVRKAEIIKH 544 Query: 542 ARMVYDHIALVVTEPGMKIPQLLIA 566 A + YDH+A+ VTEPG K+ QLLIA Sbjct: 545 AEVYYDHVAIAVTEPGRKVAQLLIA 569 >Q9K5Q7.1 Q9K5Q7_BACHD BH4031 protein Length = 654 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 267/566 (47%), Positives = 395/566 (69%), Gaps = 18/566 (3%) Query: 4 LLLIIVVSFYNWVIGVASLFLAGTLCFSMLQAELSFRRNLVEYINGLSFRIKRVEGEAVS 63 L+ +I +SFY W +GV + L + L+A +SF R+L +YI+ LS+R+ + EAV+ Sbjct: 22 LVFLIALSFYQWQLGVIGVLLLLVIAIFSLRARISFERDLEQYISTLSYRVHKAGEEAVT 81 Query: 64 MLPLGIILYSEDRKVEWNNRSAGDIFSRKSLVGEEIEELLPDVMPSAAGHVPAKREASKE 123 LP+G+ILY++ +V+W N A + K+ + +EEL P++ V A E + E Sbjct: 82 QLPVGMILYNDQLRVQWVNPYAAEHLP-KAEIDASLEELSPEL-------VRALEEGTDE 133 Query: 124 NALKEIRKEIAVDESHYQVVIIPSERLLYLYDITXXXXXXXXXXXXXXAIGIVMMDNLDE 183 ++I ++E Y P+ERL+Y +DIT + + +DN DE Sbjct: 134 -------QKIVIEEKTYDCTFKPNERLIYFFDITESERMHQQFEESQPVLTFIYLDNYDE 186 Query: 184 AAQGMDDQQRTSLIAKVASEITEWSKQFEVYLRRLSSERYLMLLNHRSLQALEESRFVIL 243 QGM+DQ R+ L+++V S + +W+ + +++LRR +++R++ ++++ SL A+E+++F IL Sbjct: 187 VTQGMEDQVRSRLMSQVTSSLNQWANEHDLFLRRTAADRFIAVMSYGSLLAIEKTKFGIL 246 Query: 244 DEVREMTADLKVPMTLSIGLAYGSESASELGALAQSSLDMALGRGGDQAAVKAGQ-RLSF 302 DE+RE T K+P+TLSIG+ YG S ELG LAQSSLD+ALGRGGDQ A+K ++ F Sbjct: 247 DEIRETTGKEKIPLTLSIGVGYGDLSLRELGQLAQSSLDLALGRGGDQVAIKQKTGKVRF 306 Query: 303 YGGKSNAAEKRTRVRARVIAHALRDLMQESDRVLIMGHRTPDIDAVGASIGLLKAAQMYN 362 YGGKSNA EKRTRVRARVI+HALRD + ESDRV++MGH+ PD+DAVGA+IG+LK A++ + Sbjct: 307 YGGKSNAMEKRTRVRARVISHALRDFVLESDRVIVMGHKNPDMDAVGAAIGILKIAEVND 366 Query: 363 VEANIVMETP--NPSITRMMEQIRRDEGLNKSFISTEQALQVMTEHTLLIVVDTHKASMT 420 EA +V++ NP ++++ME++ ++E L FI+ E++L++MTE TLL++VDTHK SM Sbjct: 367 REAFVVLDPNDVNPDVSKLMEEVEKNEQLWDKFITPEESLELMTEETLLVIVDTHKPSMV 426 Query: 421 MEPRLVQYASRIVVVDHHRRGEEFINDAVLVYLEPYASSTCELVTELLQYIHDKIKLSPL 480 +EPRL+ Y R+VV+DHHRRGEEFI D VLVY+EPYASST ELVTELL+Y K+K+ L Sbjct: 427 IEPRLLDYVERVVVLDHHRRGEEFIEDPVLVYMEPYASSTAELVTELLEYQPKKLKMDIL 486 Query: 481 EATMLLAGITVDTKHFALHTGSRTFEAAGFLRRVGADTILIQRMLKEDLQEYISKAEIIK 540 E+T LLAG+ VDTK FA+ TG+RTF+AA FLR GADT+L+Q++LKEDL Y+ +A++++ Sbjct: 487 ESTALLAGMIVDTKSFAIRTGARTFDAASFLRSHGADTVLVQKLLKEDLNHYVKRAKLVE 546 Query: 541 HARMVYDHIALVVTEPGMKIPQLLIA 566 A++ D +A+ + QLLIA Sbjct: 547 TAKLYRDGMAIATAREEEAVSQLLIA 572 >C0ZA43.1 C0ZA43_BREBN Putative uncharacterized protein yybT Length = 645 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 265/554 (47%), Positives = 377/554 (68%), Gaps = 17/554 (3%) Query: 13 YNWVIGVASLFLAGTLCFSMLQAELSFRRNLVEYINGLSFRIKRVEGEAVSMLPLGIILY 72 ++W+ G + L LQAE F+R+L Y+ ++ R+K+ + LP+GI+LY Sbjct: 31 FHWMYGAIGMVCLIGLVLYALQAEKGFQRDLRLYLATVTHRVKKAGEGVIQELPIGILLY 90 Query: 73 SEDRKVEWNNRSAGDIFSRKSLVGEEIEELLPDVMPSAAGHVPAKREASKENALKEIRKE 132 +E++ +EW N + ++++G+ ++E+ P ++ P ++ R E Sbjct: 91 NEEKAIEWVNPYMTHMSGDETMIGKSLQEVFPQLVWK-----PEQK-----------RLE 134 Query: 133 IAVDESHYQVVIIPSERLLYLYDITXXXXXXXXXXXXXXAIGIVMMDNLDEAAQGMDDQQ 192 +E Y+V++ ERLLY DIT A+ I+ +DNLDE Q MDDQ Sbjct: 135 FTYNERVYEVIVRSDERLLYFKDITDFKELTTRYHREKAALAIIHLDNLDEVGQVMDDQS 194 Query: 193 RTSLIAKVASEITEWSKQFEVYLRRLSSERYLMLLNHRSLQALEESRFVILDEVREMTAD 252 RT L VA ITEW+ + +YLRR++++++L L+ +L LEESRF ILD VREMTAD Sbjct: 195 RTLLSTSVAGVITEWANKHGIYLRRITADKFLALMEREALDKLEESRFDILDVVREMTAD 254 Query: 253 LKVPMTLSIGLAYGSESASELGALAQSSLDMALGRGGDQAAVKAGQRLSFYGGKSNAAEK 312 K+P+TLSIG+ + + ELG +AQSSLD+ALGRGGDQ AVK G +L+FYGGKSNA EK Sbjct: 255 NKIPITLSIGVGAAATTYIELGQMAQSSLDIALGRGGDQCAVKIGNKLTFYGGKSNAVEK 314 Query: 313 RTRVRARVIAHALRDLMQESDRVLIMGHRTPDIDAVGASIGLLKAAQMYNVEANIVMETP 372 RTRVRARVIAHALRDL+ E++ V++MGH+ PD+D++GAS+G+LKA Q++N A IVM+ Sbjct: 315 RTRVRARVIAHALRDLIHEAEHVIVMGHKQPDMDSIGASLGVLKAVQLHNKTAYIVMDEG 374 Query: 373 NPSITRMMEQIRRDEGLNKSFISTEQALQVMTEHTLLIVVDTHKASMTMEPRLVQYASRI 432 N S+ R+M++I +E L ++FI+ EQA+++++ TLL+VVDTH+ S+ +EP+L+ SRI Sbjct: 375 NHSVERLMKEIYANEELAETFITPEQAIRLISGRTLLVVVDTHRPSLVIEPKLLTETSRI 434 Query: 433 VVVDHHRRGEEFINDAVLVYLEPYASSTCELVTELLQYIHDKIKLSPLEATMLLAGITVD 492 VV+DHHRR EEFI + VL+YLEPYASST ELVTELLQY +++ + L AT LLAGI VD Sbjct: 435 VVIDHHRRSEEFI-EPVLLYLEPYASSTAELVTELLQYQSERLNIDNLIATALLAGIVVD 493 Query: 493 TKHFALHTGSRTFEAAGFLRRVGADTILIQRMLKEDLQEYISKAEIIKHARMVYDHIALV 552 TK FA TGSRTFEAA FLRR GADT +QR+LKEDL +Y+ +A+II + D++A+ Sbjct: 494 TKSFAFRTGSRTFEAASFLRRNGADTAAVQRLLKEDLGQYVKRAKIIMNTETYRDNMAIA 553 Query: 553 VTEPGMKIPQLLIA 566 + +P Q+ +A Sbjct: 554 IGDPSEDYTQVQVA 567 >B7GMU5.1 B7GMU5_ANOFW Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain Length = 657 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 261/568 (45%), Positives = 381/568 (67%), Gaps = 17/568 (2%) Query: 2 LLLLLIIVVSFYNWVIGVASLFLAGTLCFSMLQAELSFRRNLVEYINGLSFRIKRVEGEA 61 + +L+I+V+++ W+IG+ L G F + ++ + + +YI+ LS+RIK+V EA Sbjct: 20 ITFVLLIIVTYFEWMIGIVGAVLLGPTLFHVFRSYKVAQEEIEDYISTLSYRIKKVGEEA 79 Query: 62 VSMLPLGIILYSEDRKVEWNNRSAGDIFSRKSLVGEEIEELLPDVMPSAAGHVPAKREAS 121 + +P+GI+L +++ ++EW N F +LVG+ + ++ ++P K EA+ Sbjct: 80 LMGMPIGIMLINDELEIEWTNSFLSSCFGVDTLVGQSLYDVAEQLVPLI------KTEAT 133 Query: 122 KENALKEIRKEIAVDESHYQVVIIPSERLLYLYDITXXXXXXXXXXXXXXAIGIVMMDNL 181 +E I + ++V+I ERLLY +DIT +G++ +DN Sbjct: 134 EEV--------ITFRDRTFKVIIRREERLLYFFDITEQAELEKKYEQEKIVLGVIFLDNY 185 Query: 182 DEAAQGMDDQQRTSLIAKVASEITEWSKQFEVYLRRLSSERYLMLLNHRSLQALEESRFV 241 D+ QGMDDQ ++ L ++V S + W+ ++ ++L+R SS+R++ +LN L+ LE+++F Sbjct: 186 DDVTQGMDDQTKSQLNSQVTSILNRWASEYGLFLKRTSSDRFVAVLNEHILEKLEKNKFS 245 Query: 242 ILDEVREMTADLKVPMTLSIGLAYGSESASELGALAQSSLDMALGRGGDQAAVK-AGQRL 300 ILDEVRE TA VP+TLSIG+ S S ELGALAQSSLD+ALGRGGDQ A+K ++ Sbjct: 246 ILDEVREQTAKNHVPLTLSIGIGTNSPSLPELGALAQSSLDLALGRGGDQVAIKQPNGKV 305 Query: 301 SFYGGKSNAAEKRTRVRARVIAHALRDLMQESDRVLIMGHRTPDIDAVGASIGLLKAAQM 360 FYGGK+N EKRTRVRARVI+HAL++L+ ES++V IMGH+ PD+DA+G++IG+LK AQM Sbjct: 306 KFYGGKTNPMEKRTRVRARVISHALKELILESEQVFIMGHKYPDMDAIGSAIGILKVAQM 365 Query: 361 YNVEANIVMETP--NPSITRMMEQIRRDEGLNKSFISTEQALQVMTEHTLLIVVDTHKAS 418 EA IV++T + + R++E++++ L FIS EQAL++ TE TLL+VVDTHK S Sbjct: 366 NQKEAFIVIDTSRIDSGVQRLLEEVKKQTELWSRFISPEQALELATEDTLLVVVDTHKPS 425 Query: 419 MTMEPRLVQYASRIVVVDHHRRGEEFINDAVLVYLEPYASSTCELVTELLQYIHDKIKLS 478 + +E RL+ R+VV+DHHRRGEEFI D +LVY+EPYASST ELVTELLQY + KLS Sbjct: 426 LVIEERLLLRLDRVVVIDHHRRGEEFIQDPILVYMEPYASSTSELVTELLQYQPKRSKLS 485 Query: 479 PLEATMLLAGITVDTKHFALHTGSRTFEAAGFLRRVGADTILIQRMLKEDLQEYISKAEI 538 LEAT LLAGI VDTK F L TGSRTF+AA +LR GADT L+Q++LKE+++ YI +A+I Sbjct: 486 MLEATALLAGIVVDTKSFTLRTGSRTFDAASYLRAQGADTTLVQKLLKENIEHYIKRAKI 545 Query: 539 IKHARMVYDHIALVVTEPGMKIPQLLIA 566 I++A + A+ P +LIA Sbjct: 546 IENAIIDEHGFAIAKGSPNETYDPVLIA 573 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,994,522,319 Number of extensions: 112950649 Number of successful extensions: 373823 Number of sequences better than 1.0e-05: 510 Number of HSP's gapped: 373013 Number of HSP's successfully gapped: 510 Length of query: 587 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 445 Effective length of database: 1,722,912,073 Effective search space: 766695872485 Effective search space used: 766695872485 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)