BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0029.p
         (82 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8U4.1 B3K8U4_9BACI S4 domain protein YaaA                          112   1e-23
B1DC03.1 B1DC03_9BACL S4 domain protein YaaA                           88   2e-16
B0A626.1 B0A626_9CLOT Putative uncharacterized protein                 83   8e-15
C0ZH39.1 C0ZH39_BREBN Putative uncharacterized protein                 82   2e-14
C3EBY0.1 C3EBY0_BACTU Putative uncharacterized protein                 80   6e-14

>B3K8U4.1 B3K8U4_9BACI S4 domain protein YaaA
          Length = 71

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/68 (80%), Positives = 59/68 (86%)

Query: 8  MKKILIHSEYIKLDQFLKLSDCVSTGGMAKALLQEGYVQVNGEKEDRRGRKLYPGDKVKV 67
          MK+I IHSEYIKLDQFLKLSDCVSTGGMAKALL EG V VN EKE+RRGRKL PGD VKV
Sbjct: 1  MKQIFIHSEYIKLDQFLKLSDCVSTGGMAKALLAEGAVLVNDEKEERRGRKLVPGDIVKV 60

Query: 68 QDNGVFEV 75
          +D G F+V
Sbjct: 61 EDCGTFQV 68


>B1DC03.1 B1DC03_9BACL S4 domain protein YaaA
          Length = 71

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 52/71 (73%)

Query: 8  MKKILIHSEYIKLDQFLKLSDCVSTGGMAKALLQEGYVQVNGEKEDRRGRKLYPGDKVKV 67
          MK+I I  EYI L QFLKL+DC+STGG AK  LQE  V +NG  ++RRGRKLY GD+V+V
Sbjct: 1  MKEIAIRDEYITLGQFLKLADCISTGGHAKFFLQENEVHINGVVDNRRGRKLYVGDRVEV 60

Query: 68 QDNGVFEVEGG 78
          +  GVF V G 
Sbjct: 61 EGCGVFTVTGA 71


>B0A626.1 B0A626_9CLOT Putative uncharacterized protein
          Length = 68

 Score = 83.2 bits (204), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 51/65 (78%)

Query: 8  MKKILIHSEYIKLDQFLKLSDCVSTGGMAKALLQEGYVQVNGEKEDRRGRKLYPGDKVKV 67
          M ++ I SEYIKLDQFLKL+D  STGG AK L+QEG V+VNGE E RRG+KL PGD V+V
Sbjct: 1  MLELKIESEYIKLDQFLKLADIASTGGHAKYLIQEGVVKVNGEVEMRRGKKLVPGDIVEV 60

Query: 68 QDNGV 72
          + N +
Sbjct: 61 EGNQI 65


>C0ZH39.1 C0ZH39_BREBN Putative uncharacterized protein
          Length = 71

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 53/68 (77%)

Query: 8  MKKILIHSEYIKLDQFLKLSDCVSTGGMAKALLQEGYVQVNGEKEDRRGRKLYPGDKVKV 67
          M+++ I ++YI L QFLKL++ + TGGMAKA L E  +Q+NGE ++RRGRKLYPGD+V +
Sbjct: 1  MREVSISTDYIALGQFLKLAEIIDTGGMAKAFLAEVPIQINGELDNRRGRKLYPGDEVAI 60

Query: 68 QDNGVFEV 75
          +  G ++V
Sbjct: 61 EGYGRYQV 68


>C3EBY0.1 C3EBY0_BACTU Putative uncharacterized protein
          Length = 74

 Score = 80.1 bits (196), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 50/73 (68%)

Query: 5  TKFMKKILIHSEYIKLDQFLKLSDCVSTGGMAKALLQEGYVQVNGEKEDRRGRKLYPGDK 64
          + FMK+I I +EYI L QFLKL+D + TGG  K  LQE  V VN E E+RRGRKLY  D 
Sbjct: 2  SDFMKRIKISTEYITLGQFLKLADVIDTGGAVKWFLQEYEVYVNNELENRRGRKLYANDV 61

Query: 65 VKVQDNGVFEVEG 77
          +++  +G F+V+ 
Sbjct: 62 IEIPGSGTFQVQA 74


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.138    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 491,234,528
Number of extensions: 17281450
Number of successful extensions: 32638
Number of sequences better than 1.0e-05: 352
Number of HSP's gapped: 32637
Number of HSP's successfully gapped: 352
Length of query: 82
Length of database: 3,060,696,203
Length adjustment: 52
Effective length of query: 30
Effective length of database: 2,570,803,423
Effective search space: 77124102690
Effective search space used: 77124102690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)