BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0028.p (380 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DC04.1 B1DC04_9BACL DNA polymerase III, beta subunit EC=2.7.7.7 526 e-147 B7GFK9.1 B7GFK9_ANOFW DNA polymerase sliding clamp subunit 403 e-110 A6CPN0.1 A6CPN0_9BACI DNA polymerase III subunit beta EC=2.7.7.7 400 e-110 C0ZH38.1 C0ZH38_BREBN DNA polymerase III beta subunit EC=2.7.7.7 398 e-109 Q2B0H5.1 Q2B0H5_9BACI DNA polymerase III subunit beta EC=2.7.7.7 394 e-107 >B1DC04.1 B1DC04_9BACL DNA polymerase III, beta subunit EC=2.7.7.7 Length = 380 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 263/380 (69%), Positives = 312/380 (82%) Query: 1 MKISILKNELNESIGHVSKAISSRTTIPILTGIKFEVSHQGVTLTASDTDISIQSFIPAE 60 MK+SI K+ELNE+I V+KA SSR TIPIL GIK EV+HQGVTLTASDTDISIQSFIP E Sbjct: 1 MKLSISKHELNEAIQQVAKAASSRPTIPILGGIKIEVTHQGVTLTASDTDISIQSFIPVE 60 Query: 61 DDSQTIVKVEQPGSVVLPAKFFVEIIKKLPSKEIHMEVKEGFQTYISSGSTEIQIVGLDP 120 D I V++PG+VVLPAKFFVEI+KKLPS + +EV FQT I SGST+IQ+VGLDP Sbjct: 61 RDDLVIANVDKPGNVVLPAKFFVEIVKKLPSDNVEIEVGAHFQTLIRSGSTDIQMVGLDP 120 Query: 121 EEFPVLPSIEENDTVSLPGDLLKNMIKQTAFSISTQETTPILTGILWNLSDNEFKFTATD 180 EEFPVLPSIE+N+ +PGDLLK MI+QT + S E TPILTG+LW+L D + KF ATD Sbjct: 121 EEFPVLPSIEQNELFQMPGDLLKAMIRQTVLAASVNEQTPILTGVLWSLQDKQLKFVATD 180 Query: 181 RHRLATRAAHLEGTESVQFANVVIAGKTLNELSKIIPDQNMLVDIVVADNQVLFKIDKVL 240 RHRLA+R A E +F NVVIA KTL ELSK++PDQ+ LVDIVVADNQVLFKI VL Sbjct: 181 RHRLASRIAQAETAADYRFNNVVIAAKTLVELSKLVPDQHGLVDIVVADNQVLFKIGNVL 240 Query: 241 FYTRILDGIYPDTSRIIPTAYKTELTLDTKKLSESIDRAYLLSREEKTNIVRMQTLENGD 300 FYTR+LDG YPDTS+IIP+ +KTEL LDTKKL+++IDRAYL+SREEKTNIVR+ T+E+G Sbjct: 241 FYTRVLDGTYPDTSKIIPSVFKTELVLDTKKLTDAIDRAYLMSREEKTNIVRLATMEDGS 300 Query: 301 VEISSSSSELGKVREELEVIDFKGEPLKISFNSKYMLDVLKVVESEQLVIAFTGMMSPII 360 +EISSSS+ELG+V E+LE F GEPLKI+FNSKYMLDVLKV++SE + I FTG MSPI+ Sbjct: 301 IEISSSSTELGRVTEQLEPKQFDGEPLKIAFNSKYMLDVLKVIDSEHIFIGFTGAMSPIV 360 Query: 361 LKPLDESRSLYVILPYRTTN 380 ++P D S + YVILPYRTTN Sbjct: 361 IRPTDHSYNTYVILPYRTTN 380 >B7GFK9.1 B7GFK9_ANOFW DNA polymerase sliding clamp subunit Length = 378 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 203/378 (53%), Positives = 275/378 (72%), Gaps = 1/378 (0%) Query: 1 MKISILKNELNESIGHVSKAISSRTTIPILTGIKFEVSHQGVTLTASDTDISIQSFIPAE 60 MK+ I + L S+ V KA+SSRTTIPILTGIK S QGVTLT SD+DISI+SFIPAE Sbjct: 1 MKVIIDREHLVRSVQDVMKAVSSRTTIPILTGIKIVASEQGVTLTGSDSDISIESFIPAE 60 Query: 61 DDSQTIVKVEQPGSVVLPAKFFVEIIKKLPSKEIHMEVKEGFQTYISSGSTEIQIVGLDP 120 + + IV V + GSVVL A+FF EI++KLP + + +EVK+ F T I SG E + GLDP Sbjct: 61 EKDRIIVDVIKQGSVVLQARFFSEIVRKLPKETVQIEVKDQFVTTIRSGKAEFHLNGLDP 120 Query: 121 EEFPVLPSIEENDTVSLPGDLLKNMIKQTAFSISTQETTPILTGILWNLSDNEFKFTATD 180 EE+P LP I+E + +P DLLK++I+QT F++ST ET PILTG+ W + +NE ATD Sbjct: 121 EEYPRLPQIQEENMFKVPADLLKHVIRQTVFAVSTSETRPILTGVNWRIENNELTCIATD 180 Query: 181 RHRLATRAAHLEGTESVQFANVVIAGKTLNELSKIIPDQNMLVDIVVADNQVLFKIDKVL 240 HRLA R A +E TES + N+VI GK+LNEL+KI+ + N LV IVV +NQ+LFK +L Sbjct: 181 SHRLAMRKAKVE-TESEAYFNIVIPGKSLNELNKILEESNELVHIVVTENQILFKTKHLL 239 Query: 241 FYTRILDGIYPDTSRIIPTAYKTELTLDTKKLSESIDRAYLLSREEKTNIVRMQTLENGD 300 F++R+LDG YPDTSR+IPT +T++ + TK+ ++IDRA LL+RE + N+VR+ TL + Sbjct: 240 FFSRLLDGNYPDTSRLIPTDSQTDVIVKTKEFLQAIDRASLLAREGRNNVVRLSTLADKI 299 Query: 301 VEISSSSSELGKVREELEVIDFKGEPLKISFNSKYMLDVLKVVESEQLVIAFTGMMSPII 360 VEISS+S E+GKV EE++ +GE LKISF++KYM+D LK +E ++ I+FTG M P + Sbjct: 300 VEISSNSPEIGKVVEEVQCEQVEGEELKISFSAKYMMDALKALEGTEIKISFTGAMRPFL 359 Query: 361 LKPLDESRSLYVILPYRT 378 ++PL + L +ILP RT Sbjct: 360 IRPLHDDSMLQLILPVRT 377 >A6CPN0.1 A6CPN0_9BACI DNA polymerase III subunit beta EC=2.7.7.7 Length = 378 Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust. Identities = 201/378 (53%), Positives = 272/378 (71%), Gaps = 1/378 (0%) Query: 1 MKISILKNELNESIGHVSKAISSRTTIPILTGIKFEVSHQGVTLTASDTDISIQSFIPAE 60 MK I +++L +S+G V KA++SRTTIPILTGIK + +GVTLT SD+DISI+SFIP E Sbjct: 1 MKFVIQRDDLVQSVGDVMKAVTSRTTIPILTGIKIIANEEGVTLTGSDSDISIESFIPKE 60 Query: 61 DDSQTIVKVEQPGSVVLPAKFFVEIIKKLPSKEIHMEVKEGFQTYISSGSTEIQIVGLDP 120 ++ IV+V + G +VL AKFF EI+KKLP + +EV+ QT I SG E + GLDP Sbjct: 61 EEGNEIVEVLETGGIVLQAKFFSEIVKKLPMDTVEIEVQNHLQTVIRSGKAEFNLNGLDP 120 Query: 121 EEFPVLPSIEENDTVSLPGDLLKNMIKQTAFSISTQETTPILTGILWNLSDNEFKFTATD 180 EE+P LP IEE + + +P DLLK MI+QT F++ST ET PILTG+ W + + E ATD Sbjct: 121 EEYPHLPQIEEGNALKVPTDLLKTMIRQTVFAVSTSETRPILTGVNWKVENGELNCIATD 180 Query: 181 RHRLATRAAHLEGTESVQFANVVIAGKTLNELSKIIPDQNMLVDIVVADNQVLFKIDKVL 240 HRLA R A LE ++ N+VI GK+L ELSKI+ D + LV+IV+ DNQVLFK ++ Sbjct: 181 SHRLAMRKAPLENDNGKEY-NIVIPGKSLTELSKILDDNSELVEIVITDNQVLFKAKHLM 239 Query: 241 FYTRILDGIYPDTSRIIPTAYKTELTLDTKKLSESIDRAYLLSREEKTNIVRMQTLENGD 300 F++R+L+G YPDTSR+IP KTELTL TK+ ++IDRA LL+RE + N+V++ T+E G Sbjct: 240 FFSRLLEGNYPDTSRLIPNESKTELTLTTKEFLQAIDRASLLAREGRNNVVKLSTIEQGF 299 Query: 301 VEISSSSSELGKVREELEVIDFKGEPLKISFNSKYMLDVLKVVESEQLVIAFTGMMSPII 360 VEISS++ E+GKV EE++ +GE LKISF++KYM+D LK +E ++ I FTG M P + Sbjct: 300 VEISSNTPEIGKVIEEVQSQSIEGEELKISFSAKYMMDALKALEGTEIHINFTGAMRPFV 359 Query: 361 LKPLDESRSLYVILPYRT 378 +KPL + L +ILP RT Sbjct: 360 IKPLHDDSILQLILPVRT 377 >C0ZH38.1 C0ZH38_BREBN DNA polymerase III beta subunit EC=2.7.7.7 Length = 379 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/378 (51%), Positives = 270/378 (71%) Query: 1 MKISILKNELNESIGHVSKAISSRTTIPILTGIKFEVSHQGVTLTASDTDISIQSFIPAE 60 M I++ + +L+ ++ HVSKA+SSRTTIPILTGIK + +G+TLTASD+D+SI+ IP E Sbjct: 1 MHITVQREKLSNAVSHVSKAVSSRTTIPILTGIKIKTDDEGLTLTASDSDVSIEVQIPME 60 Query: 61 DDSQTIVKVEQPGSVVLPAKFFVEIIKKLPSKEIHMEVKEGFQTYISSGSTEIQIVGLDP 120 + + V V QPGS+VL A+ F EI++KLPS EI ++V + T I SG E I G+D Sbjct: 61 EAGEWGVTVHQPGSIVLTARIFSEIVRKLPSNEIDIQVDDRLATKIRSGQAEFTINGMDA 120 Query: 121 EEFPVLPSIEENDTVSLPGDLLKNMIKQTAFSISTQETTPILTGILWNLSDNEFKFTATD 180 E+P LP +EE+ S+P DLLK MI+QT F +ST E PILTG++W+L + +F ATD Sbjct: 121 NEYPQLPHLEEDKVFSVPCDLLKAMIRQTVFGVSTSEMRPILTGLMWSLDQGKLRFVATD 180 Query: 181 RHRLATRAAHLEGTESVQFANVVIAGKTLNELSKIIPDQNMLVDIVVADNQVLFKIDKVL 240 HRLA+R A +E E + F NVV+ GK+ NEL KI+ D L DIVVADNQ+L K +L Sbjct: 181 SHRLASRTAMVECPEDLSFHNVVVPGKSCNELVKILDDDQNLADIVVADNQILVKSKHIL 240 Query: 241 FYTRILDGIYPDTSRIIPTAYKTELTLDTKKLSESIDRAYLLSREEKTNIVRMQTLENGD 300 FY+R+L+G YPDT+RIIP KTE+T+ TK+ +SI+RA LLSRE K+N+V++ T+ +G Sbjct: 241 FYSRLLEGTYPDTTRIIPQGSKTEITVSTKEFLQSIERASLLSREGKSNVVKLVTMPDGT 300 Query: 301 VEISSSSSELGKVREELEVIDFKGEPLKISFNSKYMLDVLKVVESEQLVIAFTGMMSPII 360 VEI+S++ E+GKV + L GE LKISFN+KYM+D L+ ++S ++ +F+G MSP + Sbjct: 301 VEITSNAPEIGKVTDILMPKAMNGEELKISFNAKYMIDALRAIDSAEIKASFSGPMSPFV 360 Query: 361 LKPLDESRSLYVILPYRT 378 ++P D L++ILP RT Sbjct: 361 IRPTDHDWMLHLILPVRT 378 >Q2B0H5.1 Q2B0H5_9BACI DNA polymerase III subunit beta EC=2.7.7.7 Length = 378 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 194/378 (51%), Positives = 274/378 (72%), Gaps = 1/378 (0%) Query: 1 MKISILKNELNESIGHVSKAISSRTTIPILTGIKFEVSHQGVTLTASDTDISIQSFIPAE 60 MK I ++ L +S+ V KA++SRTTIPILTGIK S +GVTLT SD+DISI+SFIP E Sbjct: 1 MKFQIQRDSLVQSVQDVMKAVTSRTTIPILTGIKIVASEEGVTLTGSDSDISIESFIPKE 60 Query: 61 DDSQTIVKVEQPGSVVLPAKFFVEIIKKLPSKEIHMEVKEGFQTYISSGSTEIQIVGLDP 120 D IV++ + GS+VL AKFF EI+KKLP+ ++ ++V+ QT I SG +E + GLD Sbjct: 61 SDGNEIVEISRTGSIVLQAKFFSEIVKKLPTDKVEIDVQNHLQTVIRSGKSEFNLNGLDA 120 Query: 121 EEFPVLPSIEENDTVSLPGDLLKNMIKQTAFSISTQETTPILTGILWNLSDNEFKFTATD 180 EE+P LP + E +P DLLK M++QT F++ST ET PILTG+ W + D E ATD Sbjct: 121 EEYPHLPQLSEEKIFRIPTDLLKAMVRQTVFAVSTSETRPILTGVNWKVEDAELTCIATD 180 Query: 181 RHRLATRAAHLEGTESVQFANVVIAGKTLNELSKIIPDQNMLVDIVVADNQVLFKIDKVL 240 HRLA R A +E TE+ + NVVI GK+L+ELSKI+ D N L+DIV+ +NQVLFK + +L Sbjct: 181 SHRLALRKAKVE-TEANESYNVVIPGKSLSELSKILDDNNDLIDIVITENQVLFKAENLL 239 Query: 241 FYTRILDGIYPDTSRIIPTAYKTELTLDTKKLSESIDRAYLLSREEKTNIVRMQTLENGD 300 F++R+L+G YPDT+R+IP KTE+ + TK+ ++IDRA LL+RE + N+V+ T+E+G Sbjct: 240 FFSRLLEGNYPDTTRLIPNESKTEIGMQTKEFLQAIDRASLLAREGRNNVVKFSTIEDGV 299 Query: 301 VEISSSSSELGKVREELEVIDFKGEPLKISFNSKYMLDVLKVVESEQLVIAFTGMMSPII 360 VEISS++ E+GKV EE++ +GE LKISF++KYM+D LK +E ++ ++FTG M P + Sbjct: 300 VEISSNTPEIGKVVEEVQSQFIEGEDLKISFSAKYMMDALKALEGTEIKVSFTGAMRPFV 359 Query: 361 LKPLDESRSLYVILPYRT 378 ++P+++ L +ILP RT Sbjct: 360 IRPMNDESILQLILPVRT 377 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.133 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,020,087,015 Number of extensions: 81207384 Number of successful extensions: 195744 Number of sequences better than 1.0e-05: 1749 Number of HSP's gapped: 189355 Number of HSP's successfully gapped: 1749 Length of query: 380 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 243 Effective length of database: 1,770,017,148 Effective search space: 430114166964 Effective search space used: 430114166964 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)