BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0026.p
         (44 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DC06.1 B1DC06_9BACL 50S ribosomal protein L34                        80   5e-14
C0ZA72.1 RL34_BREBN 50S ribosomal protein L34                          70   5e-11
Q9RCA3.1 RL34_BACHD 50S ribosomal protein L34                          68   2e-10
B7DUM7.1 B7DUM7_9BACL 50S ribosomal protein L34                        68   3e-10
C2H8P9.1 C2H8P9_ENTFC 50S ribosomal protein L34                        68   3e-10

>B1DC06.1 B1DC06_9BACL 50S ribosomal protein L34
          Length = 44

 Score = 80.1 bits (196), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/44 (93%), Positives = 42/44 (95%)

Query: 1  MRPTFKPNVSKRKKVHGFRKRMSTKNGRKVLAARRLKGRKVLSA 44
          MRPTFKPNVSKR KVHGFRKRMS+KNGRKVLAARR KGRKVLSA
Sbjct: 1  MRPTFKPNVSKRSKVHGFRKRMSSKNGRKVLAARRQKGRKVLSA 44


>C0ZA72.1 RL34_BREBN 50S ribosomal protein L34
          Length = 44

 Score = 70.1 bits (170), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 39/44 (88%)

Query: 1  MRPTFKPNVSKRKKVHGFRKRMSTKNGRKVLAARRLKGRKVLSA 44
          M+P+F PN  KRKK HGFRKRMSTKNGRK+LAARR +GRKVLSA
Sbjct: 1  MKPSFNPNNRKRKKDHGFRKRMSTKNGRKILAARRQRGRKVLSA 44


>Q9RCA3.1 RL34_BACHD 50S ribosomal protein L34
          Length = 45

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/43 (83%), Positives = 38/43 (88%)

Query: 2  RPTFKPNVSKRKKVHGFRKRMSTKNGRKVLAARRLKGRKVLSA 44
          +PTF+PN  KRKKVHGFR RMSTKNGRKVLA RR KGRKVLSA
Sbjct: 3  KPTFQPNNRKRKKVHGFRARMSTKNGRKVLARRRKKGRKVLSA 45


>B7DUM7.1 B7DUM7_9BACL 50S ribosomal protein L34
          Length = 72

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 39/44 (88%)

Query: 1  MRPTFKPNVSKRKKVHGFRKRMSTKNGRKVLAARRLKGRKVLSA 44
          M+PT++PNV KRKK HGFRKRM+TK GR+VLA RR KGRKVLSA
Sbjct: 29 MKPTYQPNVRKRKKNHGFRKRMATKGGRRVLARRRAKGRKVLSA 72


>C2H8P9.1 C2H8P9_ENTFC 50S ribosomal protein L34
          Length = 44

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 40/44 (90%)

Query: 1  MRPTFKPNVSKRKKVHGFRKRMSTKNGRKVLAARRLKGRKVLSA 44
          M+ T++PN  KR+KVHGFRKRMSTKNGR+VLA+RR KGRKVLSA
Sbjct: 1  MKRTYQPNKRKRQKVHGFRKRMSTKNGRRVLASRRRKGRKVLSA 44


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 227,973,751
Number of extensions: 5034361
Number of successful extensions: 11030
Number of sequences better than 1.0e-05: 987
Number of HSP's gapped: 11032
Number of HSP's successfully gapped: 987
Length of query: 44
Length of database: 3,060,696,203
Length adjustment: 18
Effective length of query: 26
Effective length of database: 2,891,117,933
Effective search space: 75169066258
Effective search space used: 75169066258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)