BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0025.p
         (87 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8T5.1 B3K8T5_9BACI Ribonuclease P protein component                130   5e-29
B1DC07.1 B1DC07_9BACL Ribonuclease P protein component                 94   6e-18
A8W2L4.1 A8W2L4_9BACI Toxin secretion/phage lysis holin                82   2e-14
C3EBX6.1 C3EBX6_BACTU Ribonuclease P protein component                 79   1e-13
C2YIS4.1 C2YIS4_BACCE Ribonuclease P protein component                 79   1e-13

>B3K8T5.1 B3K8T5_9BACI Ribonuclease P protein component
          Length = 116

 Score =  130 bits (326), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 74/86 (86%)

Query: 1   VYWFNRKEVERFRLGVSVSKKVGNAVVRNRMRRLVKEIVRHHEPEIAGGLDMVFIVRKGA 60
           VYW  +KEVE+FR+GVS SKK+GNAVVRNRMRRLVKEIVRHH+ +I   +D++FIVRKGA
Sbjct: 30  VYWSRKKEVEQFRVGVSCSKKIGNAVVRNRMRRLVKEIVRHHQHQIIEHIDLIFIVRKGA 89

Query: 61  LSKDYAELEKSVLHVLRKAKLLKASR 86
           L K Y ELEKSVLHVLRK+ LLKA R
Sbjct: 90  LDKSYQELEKSVLHVLRKSSLLKAKR 115


>B1DC07.1 B1DC07_9BACL Ribonuclease P protein component
          Length = 117

 Score = 93.6 bits (231), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 60/83 (72%)

Query: 1   VYWFNRKEVERFRLGVSVSKKVGNAVVRNRMRRLVKEIVRHHEPEIAGGLDMVFIVRKGA 60
           VYW  +   E FRLGVS SKK+GNAVVRNRMRR++KEIVR +  +I    D + IVRK A
Sbjct: 30  VYWSRQPVAEPFRLGVSASKKIGNAVVRNRMRRVIKEIVRLNGEKIVPNTDFILIVRKPA 89

Query: 61  LSKDYAELEKSVLHVLRKAKLLK 83
           +  +  +LEKS+ HVL+KA LLK
Sbjct: 90  VEMESKQLEKSIFHVLKKAGLLK 112


>A8W2L4.1 A8W2L4_9BACI Toxin secretion/phage lysis holin
          Length = 120

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 56/82 (68%)

Query: 1   VYWFNRKEVERFRLGVSVSKKVGNAVVRNRMRRLVKEIVRHHEPEIAGGLDMVFIVRKGA 60
           VY F+R + +  R G+S+SKK+GNAV RNR++RLVKE++RH    +  G D+V I RK  
Sbjct: 30  VYTFDRNDQDPSRFGLSISKKIGNAVTRNRIKRLVKEVIRHQLDHLPLGQDVVIIARKPV 89

Query: 61  LSKDYAELEKSVLHVLRKAKLL 82
            + D+ ++ KS+ HV R A L+
Sbjct: 90  ATMDFHDVNKSIHHVFRVAGLM 111


>C3EBX6.1 C3EBX6_BACTU Ribonuclease P protein component
          Length = 119

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 56/79 (70%)

Query: 1   VYWFNRKEVERFRLGVSVSKKVGNAVVRNRMRRLVKEIVRHHEPEIAGGLDMVFIVRKGA 60
           VY  +++E   FR+G+SVSKK+GNAVVRNR++R+V++ +   + EIA G D V I RK  
Sbjct: 34  VYQLDKEEQPNFRIGLSVSKKIGNAVVRNRIKRMVRQAITELKDEIASGKDFVIIARKPC 93

Query: 61  LSKDYAELEKSVLHVLRKA 79
               Y E++KS++HV +++
Sbjct: 94  AEMTYEEVKKSLIHVFKRS 112


>C2YIS4.1 C2YIS4_BACCE Ribonuclease P protein component
          Length = 119

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 56/79 (70%)

Query: 1   VYWFNRKEVERFRLGVSVSKKVGNAVVRNRMRRLVKEIVRHHEPEIAGGLDMVFIVRKGA 60
           VY  +++E   FR+G+SVSKK+GNAVVRNR++R+V++ +   + EIA G D V I RK  
Sbjct: 34  VYQLDKEEQPNFRIGLSVSKKIGNAVVRNRIKRMVRQAITELKDEIASGKDFVIIARKPC 93

Query: 61  LSKDYAELEKSVLHVLRKA 79
               Y E++KS++HV +++
Sbjct: 94  AEMTYEEVKKSLIHVFKRS 112


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.137    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 439,743,904
Number of extensions: 13797047
Number of successful extensions: 38210
Number of sequences better than 1.0e-05: 385
Number of HSP's gapped: 38210
Number of HSP's successfully gapped: 385
Length of query: 87
Length of database: 3,060,696,203
Length adjustment: 57
Effective length of query: 30
Effective length of database: 2,523,698,348
Effective search space: 75710950440
Effective search space used: 75710950440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)