BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0023.p (244 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8T3.1 B3K8T3_9BACI Single-stranded nucleic acid binding R3H d... 285 2e-75 B1DC09.1 B1DC09_9BACL Single-stranded nucleic acid binding R3H d... 230 8e-59 A6CPN6.1 A6CPN6_9BACI SpoIIIJ-associated protein 179 3e-43 B6FVU0.1 B6FVU0_9CLOT Putative uncharacterized protein 169 3e-40 B5CNF4.1 B5CNF4_9FIRM Putative uncharacterized protein 165 3e-39 >B3K8T3.1 B3K8T3_9BACI Single-stranded nucleic acid binding R3H domain protein Length = 262 Score = 285 bits (730), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 148/260 (56%), Positives = 184/260 (70%), Gaps = 16/260 (6%) Query: 1 MSKVVATGKTIEEAVERGLSQLGVHKDRVTVNVLEQPSRGFLGLIGAKGAKVELTL---- 56 MSK+VATGKTIE+AV +GL++LGV +DRV+V VL QPSRGFLGL G K AKVELTL Sbjct: 1 MSKIVATGKTIEDAVAQGLARLGVSQDRVSVEVLSQPSRGFLGLFGVKEAKVELTLLPDG 60 Query: 57 ---------IXXXXXXXXXXXXXXXQQSTRESKQEAAGGVPRQDTGHPVEEA---YQEAV 104 + ++ ++ AG + G E YQEA+ Sbjct: 61 AGGEPSVKEVSPSGTQAVPAKTVQVSHASVATQAAPAGTAIAESPGTASLEGKDPYQEAI 120 Query: 105 HFIVDVAKSMGLEVEVEIVHAKESTVLQIAGPDLGLLIGRRGQTLDALQYLANIVANRYS 164 F+++ ++MGL++ VE+ K+ T LQI+G LGL+IGRRGQTLDALQYLANIVANRYS Sbjct: 121 AFLIETGQAMGLDISVEMEKGKDFTTLQISGAGLGLMIGRRGQTLDALQYLANIVANRYS 180 Query: 165 DSFIRLVLDAENFRERRKKTLEELADRLAGRVVRTRKEVVLEPMSPQERKIIHSRLQDHK 224 DS++R+VLDAENFR+RRKKTLE+LADRLAGRV++TRKE+VLEPM ERK+IH++LQ H Sbjct: 181 DSYLRIVLDAENFRDRRKKTLEDLADRLAGRVLKTRKEIVLEPMPAAERKVIHAKLQSHG 240 Query: 225 QVNTLSKGEEPNRRVVITLK 244 V T SKGEEPNRRVVIT K Sbjct: 241 AVKTYSKGEEPNRRVVITPK 260 >B1DC09.1 B1DC09_9BACL Single-stranded nucleic acid binding R3H domain protein Length = 210 Score = 230 bits (587), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 138/245 (56%), Positives = 170/245 (69%), Gaps = 40/245 (16%) Query: 1 MSKVVATGKTIEEAVERGLSQLGVHKDRVTVNVLEQPSRGFLGLIGAKGAKVELTLIXXX 60 M K+VA+GKTI++AV GL+QL V KDRV V V+EQPS+G GLIG K AKVEL LI Sbjct: 1 MKKIVASGKTIDDAVRSGLTQLNVTKDRVKVLVMEQPSKGLFGLIGVKEAKVELELIP-- 58 Query: 61 XXXXXXXXXXXXQQSTRESKQEAAGGVPRQDTGHPVEEAYQEAVHFIVDVAKSMGLEVEV 120 P EA Q F+ DV+++MGL + + Sbjct: 59 ---------------------------------DPTIEAEQ----FLRDVSEAMGLTIAI 81 Query: 121 EIVHAKESTVLQIAGP-DLGLLIGRRGQTLDALQYLANIVANRYSDSFIRLVLDAENFRE 179 E KE+T L ++G D+G+LIGRRGQTLDALQYL NIVANR+SDS +R+VLDAE+FRE Sbjct: 82 ERKQTKEATYLSVSGGGDIGMLIGRRGQTLDALQYLVNIVANRFSDSHLRIVLDAEDFRE 141 Query: 180 RRKKTLEELADRLAGRVVRTRKEVVLEPMSPQERKIIHSRLQDHKQVNTLSKGEEPNRRV 239 RR++TLEEL++RLAGRVVRT+KEVVLEPMS ERK+IHS+LQ+H +V T SKG+EPNRRV Sbjct: 142 RRRRTLEELSERLAGRVVRTKKEVVLEPMSSHERKVIHSQLQNHPRVKTYSKGDEPNRRV 201 Query: 240 VITLK 244 VI LK Sbjct: 202 VIALK 206 >A6CPN6.1 A6CPN6_9BACI SpoIIIJ-associated protein Length = 206 Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 99/244 (40%), Positives = 142/244 (58%), Gaps = 39/244 (15%) Query: 1 MSKVVATGKTIEEAVERGLSQLGVHKDRVTVNVLEQPSRGFLGLIGAKGAKVELTLIXXX 60 M +V ATG ++EEAVE L+QL + ++ + V ++ +GF GL G++ A V + Sbjct: 1 MREVTATGPSVEEAVESALAQLNITREEAEIAVKDEGKKGFFGLFGSRPATVLV------ 54 Query: 61 XXXXXXXXXXXXQQSTRESKQEAAGGVPRQDTGHPVEEAYQEAVHFIVDVAKSMGLEVEV 120 V + E ++V V+ MG++VEV Sbjct: 55 ---------------------------------KKVINPFDEVKKYLVSVSNMMGIDVEV 81 Query: 121 EIVHAKESTVLQIAGPDLGLLIGRRGQTLDALQYLANIVANRYSDSFIRLVLDAENFRER 180 E+ + Q++G + LLIG+RGQTL++LQ+LA +VANRYSD F+ +VLDAEN+RER Sbjct: 82 EMKVEGRNAEFQLSGEKIALLIGKRGQTLNSLQHLAGLVANRYSDQFLTVVLDAENYRER 141 Query: 181 RKKTLEELADRLAGRVVRTRKEVVLEPMSPQERKIIHSRLQDHKQVNTLSKGEEPNRRVV 240 RK+TL LA+RLA + VRT ++V LEPM ERK+IHS L K+V+T S+G EPNR +V Sbjct: 142 RKQTLSNLAERLAEKAVRTNRKVSLEPMPSYERKVIHSALVRSKKVDTFSEGSEPNRYIV 201 Query: 241 ITLK 244 I K Sbjct: 202 IAPK 205 >B6FVU0.1 B6FVU0_9CLOT Putative uncharacterized protein Length = 269 Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 109/267 (40%), Positives = 155/267 (58%), Gaps = 25/267 (9%) Query: 1 MSKVVATGKTIEEAVERGLSQLGVHKDRVTVNVLEQPSRGFLGLIGAKGA------KVEL 54 M+++ + K + +A+ QLGV + V+E+ S GFLG IG+K A KV Sbjct: 1 MNEIRVSAKNVSDAITEASIQLGVTSSELEYEVIEKGSTGFLG-IGSKQAVIRAWKKVVE 59 Query: 55 TLIXXXXXXXXXXXXXXXQQ---------STRESKQEA-------AGGVPRQDTGHPVEE 98 + QQ S RE K+E V R++ V+E Sbjct: 60 EPVEEVREEVEEVKPSLEQQIEKAKETVESHREVKKEVHVKKEHVKEPVRREEKLSEVQE 119 Query: 99 AYQEAVH-FIVDVAKSMGLEVEV-EIVHAKESTVLQIAGPDLGLLIGRRGQTLDALQYLA 156 + +EA F+ DV K+MG+EVE+ + + +++ G +G+LIG+RGQTLD+LQYL Sbjct: 120 STKEACEKFLHDVLKTMGMEVEITSSIDQDGALCIEMQGEHMGILIGKRGQTLDSLQYLT 179 Query: 157 NIVANRYSDSFIRLVLDAENFRERRKKTLEELADRLAGRVVRTRKEVVLEPMSPQERKII 216 N VAN+ D ++R+ LD EN+R+RRK+TLE LA +A +V RT+K V LEPM+P ER+II Sbjct: 180 NRVANKMQDGYVRVKLDTENYRQRRKETLENLAKNIAYKVKRTKKPVSLEPMNPYERRII 239 Query: 217 HSRLQDHKQVNTLSKGEEPNRRVVITL 243 HS LQ K V+T S+GEEP RRVV+TL Sbjct: 240 HSALQADKYVSTHSEGEEPYRRVVVTL 266 >B5CNF4.1 B5CNF4_9FIRM Putative uncharacterized protein Length = 277 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 106/265 (40%), Positives = 147/265 (55%), Gaps = 30/265 (11%) Query: 7 TGKTIEEAVERGLSQLGVHKDRVTVNVLEQPSRGFLGLIGAKGAKVE------------- 53 + KT+++A+ + QLGV DR+ V+E+ S GFLG IG K A +E Sbjct: 15 SAKTVDDAITEAMIQLGVTSDRLEYEVIEKGSSGFLG-IGMKQAVIEARRKPESEPEVVE 73 Query: 54 LTLIXXXXXXXXXXXXXXXQQSTRESKQEAAGGVPRQDTGHPVEEAYQ------------ 101 + E K+EA V + P EE + Sbjct: 74 EEPFAPVEEIREEKAEEIAEPVKAEVKEEAP--VVEKQEERPAEEPKKARELAEVQPQTV 131 Query: 102 EAVH-FIVDVAKSMGLEVEVEI-VHAKESTVLQIAGPDLGLLIGRRGQTLDALQYLANIV 159 EAV F+ D K+M +EVE+EI + + + G +G+LIG+RGQTLD+LQYLAN V Sbjct: 132 EAVKTFLADTMKAMNMEVEIEISIDEDGALCADLRGEHMGILIGKRGQTLDSLQYLANRV 191 Query: 160 ANRYSDSFIRLVLDAENFRERRKKTLEELADRLAGRVVRTRKEVVLEPMSPQERKIIHSR 219 AN++ D ++R+ LD EN+R RR++TL+ LA +A +V R R+ V LEPM+P ER+IIHS Sbjct: 192 ANKHQDGYVRVKLDTENYRARREETLKHLAKNIAHKVKRNRRPVALEPMNPYERRIIHSA 251 Query: 220 LQDHKQVNTLSKGEEPNRRVVITLK 244 LQ V T S+GEEP R+VVITLK Sbjct: 252 LQSDPYVTTHSEGEEPYRKVVITLK 276 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.133 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,188,600,014 Number of extensions: 42040910 Number of successful extensions: 140015 Number of sequences better than 1.0e-05: 568 Number of HSP's gapped: 139748 Number of HSP's successfully gapped: 660 Length of query: 244 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 112 Effective length of database: 1,817,122,223 Effective search space: 203517688976 Effective search space used: 203517688976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)