BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0021.p (628 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8T1.1 B3K8T1_9BACI Glucose inhibited division protein A 1043 0.0 B1DC11.1 B1DC11_9BACL Glucose inhibited division protein A 983 0.0 C0ZA64.1 C0ZA64_BREBN tRNA uridine 5-carboxymethylaminomethyl mo... 853 0.0 Q9RCA8.2 MNMG_BACHD tRNA uridine 5-carboxymethylaminomethyl modi... 847 0.0 Q65CN2.1 MNMG_BACLD tRNA uridine 5-carboxymethylaminomethyl modi... 842 0.0 >B3K8T1.1 B3K8T1_9BACI Glucose inhibited division protein A Length = 628 Score = 1043 bits (2696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/628 (79%), Positives = 546/628 (86%) Query: 1 MSYDGGSYDVVVIXXXXXXXXXXXXXXXXXCRTLMITINLDMVAFMPCNPSIGGPAKGHV 60 MSY GG+YDV+V+ TLM+TINLDMVAFMPCNPSIGGPAKGHV Sbjct: 1 MSYMGGTYDVIVVGAGHAGCEAALASARMGAETLMVTINLDMVAFMPCNPSIGGPAKGHV 60 Query: 61 VREIDALGGEMGRNIDKTFIQLRMLNTGKGPAVHALRAQADKFLYQHAMKETMENTPNLT 120 VREIDALGGEMGRNIDKTFIQ+RMLNTGKGPAVHALRAQADKF YQH MKETME LT Sbjct: 61 VREIDALGGEMGRNIDKTFIQMRMLNTGKGPAVHALRAQADKFSYQHTMKETMEKEEKLT 120 Query: 121 LRQGMVEELIVENGRCAGVITKTGTVYHSKTVILTTGTYLRGKVIMGELTYESGPNNQQP 180 LRQGMV++LIVE+G C G++T+TGT Y +K V+LTTGTYLRGKVIMGEL YESGPNNQQP Sbjct: 121 LRQGMVDQLIVEDGVCVGIVTQTGTEYRAKAVVLTTGTYLRGKVIMGELMYESGPNNQQP 180 Query: 181 SVRLSENLRELGFDLVRFKTGTPPRVHKDTIDFSKTEIQPGDEKPKFFSFETKSSDNEQL 240 SV+L+ NLRELGFDLVRFKTGTPPRVHKDTIDFSKTEIQPGDEKPKFFS+ETKSSDNEQL Sbjct: 181 SVKLAHNLRELGFDLVRFKTGTPPRVHKDTIDFSKTEIQPGDEKPKFFSYETKSSDNEQL 240 Query: 241 PCWLTYTSEVTHQIINDNLHRAPMFTGIIEGTGPRYCPSIEDKVVRFSDKSQHQIFLEPE 300 PCWLTYTS TH+IINDNLHRAPMF+G+IEGTGPRYCPSIEDK+VRF+DK +HQIFLEPE Sbjct: 241 PCWLTYTSVDTHKIINDNLHRAPMFSGVIEGTGPRYCPSIEDKIVRFADKPKHQIFLEPE 300 Query: 301 GKNTAEYYVQGLSTSLPEDVQLAILRSIPGMEKVEMMRNGYAIEYDAMVPTQLWPSLETK 360 GKNT EYYVQGLSTS+PEDVQLA+LRSIPGMEKVEMMRNGYAIEYDAMVPTQLWPSLETK Sbjct: 301 GKNTKEYYVQGLSTSMPEDVQLAVLRSIPGMEKVEMMRNGYAIEYDAMVPTQLWPSLETK 360 Query: 361 RLPGLFTAGQINGTSGYEEXXXXXXXXXXXXXRKVQEKEPVVLDRSQGYIGVLIDDLVTK 420 +LPGLFTAGQINGTSGYEE RKVQ KEPV+LDRSQGYIGVLIDDLVTK Sbjct: 361 KLPGLFTAGQINGTSGYEEAAGQGIMAGINAARKVQGKEPVILDRSQGYIGVLIDDLVTK 420 Query: 421 GTNEPYRLLTSRAEYRLLLRHDNADLRLTPIGYEIGLIPKQRYEAFLDKKXXXXXXXXXX 480 GTNEPYRLLTSRAEYRLLLRHDNADLRLT IG++IGLI ++RY F+ KK Sbjct: 421 GTNEPYRLLTSRAEYRLLLRHDNADLRLTEIGHDIGLISEERYAKFVLKKQLVEQEIERL 480 Query: 481 XXTKVKPVEVNAALAEYESAPIVDGSNLLTLMRRPEVAYSFVDLVSPSPEGLDEEMKEQV 540 TKVKPVEVNA L SAPIVDGSN+LT++RRPE+ ++ V+ +SPSP LDEEMKEQV Sbjct: 481 RQTKVKPVEVNAMLEAAGSAPIVDGSNMLTILRRPEITFAMVESLSPSPYELDEEMKEQV 540 Query: 541 EIQIKYAGYIEKQLLHVEKLQKMEKKKIPDDINYNEIHGLAMEARQKLTKIAPISIGQAS 600 EIQIKYAGYIEKQL HVEKLQKMEKK+IP+DI Y+EI+GLAMEARQKL KI PISIGQAS Sbjct: 541 EIQIKYAGYIEKQLGHVEKLQKMEKKRIPEDIVYDEINGLAMEARQKLNKIRPISIGQAS 600 Query: 601 RIAGVTPADISILLVHLEHYNRVTAAKG 628 RIAGVTPADISILLV+LEHYNRVTAAKG Sbjct: 601 RIAGVTPADISILLVYLEHYNRVTAAKG 628 >B1DC11.1 B1DC11_9BACL Glucose inhibited division protein A Length = 629 Score = 983 bits (2540), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/628 (74%), Positives = 530/628 (84%) Query: 1 MSYDGGSYDVVVIXXXXXXXXXXXXXXXXXCRTLMITINLDMVAFMPCNPSIGGPAKGHV 60 M+Y+ G Y+V+VI C TL++TINLDMVAFMPCNPSIGGPAKGHV Sbjct: 1 MTYEAGQYEVIVIGAGHAGAEAALASARMGCETLLLTINLDMVAFMPCNPSIGGPAKGHV 60 Query: 61 VREIDALGGEMGRNIDKTFIQLRMLNTGKGPAVHALRAQADKFLYQHAMKETMENTPNLT 120 VREIDALGGEMGRNIDKTFIQ+RMLNTGKGPAVHALRAQADKF YQH MK+T+E T +LT Sbjct: 61 VREIDALGGEMGRNIDKTFIQMRMLNTGKGPAVHALRAQADKFSYQHTMKKTIEETDHLT 120 Query: 121 LRQGMVEELIVENGRCAGVITKTGTVYHSKTVILTTGTYLRGKVIMGELTYESGPNNQQP 180 LRQGM E+LIVE+G+ AG++TKTG +Y +K V++TTGTYLRGK+IMGEL YESGPNNQQP Sbjct: 121 LRQGMAEDLIVEDGKIAGIVTKTGAIYRAKAVVITTGTYLRGKIIMGELMYESGPNNQQP 180 Query: 181 SVRLSENLRELGFDLVRFKTGTPPRVHKDTIDFSKTEIQPGDEKPKFFSFETKSSDNEQL 240 SV+LS +L+ELGF L RFKTGTPPRVHKDTIDFSKTEIQPGD+ PKFFS+ETKSSDNEQL Sbjct: 181 SVKLSASLKELGFKLARFKTGTPPRVHKDTIDFSKTEIQPGDDNPKFFSYETKSSDNEQL 240 Query: 241 PCWLTYTSEVTHQIINDNLHRAPMFTGIIEGTGPRYCPSIEDKVVRFSDKSQHQIFLEPE 300 PCWLTYTSE TH+IINDNLHRAPMF+G IEGTGPRYCPSIEDK+VRF+DK +HQIFLEPE Sbjct: 241 PCWLTYTSEATHKIINDNLHRAPMFSGAIEGTGPRYCPSIEDKIVRFADKPKHQIFLEPE 300 Query: 301 GKNTAEYYVQGLSTSLPEDVQLAILRSIPGMEKVEMMRNGYAIEYDAMVPTQLWPSLETK 360 GK+T+EYYVQGLSTS+PEDVQL ILRSIPG+EKVEMMRNGYAIEYDA+VPTQLWPSLETK Sbjct: 301 GKHTSEYYVQGLSTSMPEDVQLGILRSIPGLEKVEMMRNGYAIEYDAVVPTQLWPSLETK 360 Query: 361 RLPGLFTAGQINGTSGYEEXXXXXXXXXXXXXRKVQEKEPVVLDRSQGYIGVLIDDLVTK 420 + GLFTAGQINGTSGYEE RKVQ KEPVV+DRSQGYIGV+IDDLVTK Sbjct: 361 LVDGLFTAGQINGTSGYEEAAGQGIIAGINAARKVQGKEPVVIDRSQGYIGVMIDDLVTK 420 Query: 421 GTNEPYRLLTSRAEYRLLLRHDNADLRLTPIGYEIGLIPKQRYEAFLDKKXXXXXXXXXX 480 GT++PYRLLTSRAEYRLLLRHDNADLRLTP GYEIGLI ++RY+AFL+KK Sbjct: 421 GTSDPYRLLTSRAEYRLLLRHDNADLRLTPTGYEIGLISEERYQAFLNKKELVAQEIERL 480 Query: 481 XXTKVKPVEVNAALAEYESAPIVDGSNLLTLMRRPEVAYSFVDLVSPSPEGLDEEMKEQV 540 K+KP L SAPI + L+L+RRPE++Y+ ++ +SPS L EEMKEQV Sbjct: 481 GTVKIKPEVAQPVLDAANSAPIAFTMDALSLLRRPELSYALLEQLSPSELPLTEEMKEQV 540 Query: 541 EIQIKYAGYIEKQLLHVEKLQKMEKKKIPDDINYNEIHGLAMEARQKLTKIAPISIGQAS 600 EIQIKYAGYIEKQL VE+L KMEKKKIPDDI Y+E+HGLA EA+QKL I P+SIGQAS Sbjct: 541 EIQIKYAGYIEKQLHQVERLSKMEKKKIPDDIVYSEVHGLASEAKQKLADIRPLSIGQAS 600 Query: 601 RIAGVTPADISILLVHLEHYNRVTAAKG 628 RIAGVTPADISILLV+LEHYNRVTAA+G Sbjct: 601 RIAGVTPADISILLVYLEHYNRVTAARG 628 >C0ZA64.1 C0ZA64_BREBN tRNA uridine 5-carboxymethylaminomethyl modification enzyme Length = 632 Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/628 (65%), Positives = 495/628 (78%), Gaps = 3/628 (0%) Query: 2 SYDGGSYDVVVIXXXXXXXXXXXXXXXXXCRTLMITINLDMVAFMPCNPSIGGPAKGHVV 61 +Y+ GS+DV+VI C TL++TINLD VA+MPCNPS+GGPAKGHVV Sbjct: 6 AYEAGSFDVIVIGAGHAGAEAALAAARMGCSTLLLTINLDAVAYMPCNPSVGGPAKGHVV 65 Query: 62 REIDALGGEMGRNIDKTFIQLRMLNTGKGPAVHALRAQADKFLYQHAMKETMENTPNLTL 121 RE+DALGGEMGRN DKT IQ+RMLNTGKGPAVHALRAQADKF YQH MK+T+ENTPNL L Sbjct: 66 RELDALGGEMGRNTDKTHIQMRMLNTGKGPAVHALRAQADKFAYQHEMKKTIENTPNLIL 125 Query: 122 RQGMVEELIVENGRCAGVITKTGTVYHSKTVILTTGTYLRGKVIMGELTYESGPNNQQPS 181 RQ MVEELIV +G C GVIT+TG Y +K+V+LTTGTYLRGK+I+G+L YESGPNN +PS Sbjct: 126 RQAMVEELIVNDGVCEGVITQTGARYMAKSVVLTTGTYLRGKIILGDLQYESGPNNMRPS 185 Query: 182 VRLSENLRELGFDLVRFKTGTPPRVHKDTIDFSKTEIQPGDEKPKFFSFETKSSDNEQLP 241 +RL+ +L+ELGF++ RFKTGTPPRVH ++DFSK EIQPGD P+ FS+ET +QLP Sbjct: 186 IRLAHHLKELGFEMTRFKTGTPPRVHSSSVDFSKMEIQPGDPVPRAFSYETTEFIMDQLP 245 Query: 242 CWLTYTSEVTHQIINDNLHRAPMFTGIIEGTGPRYCPSIEDKVVRFSDKSQHQIFLEPEG 301 CWLTYT+E TH +IN NLHRAPM++G+IEGTGPRYCPSIEDKVVRF+DK +HQIFLEPEG Sbjct: 246 CWLTYTNEETHGLINSNLHRAPMYSGMIEGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEG 305 Query: 302 KNTAEYYVQGLSTSLPEDVQLAILRSIPGMEKVEMMRNGYAIEYDAMVPTQLWPSLETKR 361 +NT E YVQGLSTSLPEDVQL++LRS+ GME+V+MMR GYAIEYD++VPTQLWPSLETK Sbjct: 306 RNTEEMYVQGLSTSLPEDVQLSMLRSMAGMEEVKMMRPGYAIEYDSIVPTQLWPSLETKT 365 Query: 362 LPGLFTAGQINGTSGYEEXXXXXXXXXXXXXRKVQEKEPVVLDRSQGYIGVLIDDLVTKG 421 LPGLFTAGQINGTSGYEE R+VQ K PV+L R + YIGVLIDDLVTKG Sbjct: 366 LPGLFTAGQINGTSGYEEAAGQGLMAGINAARRVQGKPPVILGRDEAYIGVLIDDLVTKG 425 Query: 422 TNEPYRLLTSRAEYRLLLRHDNADLRLTPIGYEIGLIPKQRYEAFLDKKXXXXXXXXXXX 481 T+EPYRLLTSRAEYRLLLRHDNADLRLT IG+EIGLI ++RY F K+ Sbjct: 426 THEPYRLLTSRAEYRLLLRHDNADLRLTDIGHEIGLISEERYHRFNQKRELIEQEKERVA 485 Query: 482 XTKVKP--VEVNAALAEYESAPIVDGSNLLTLMRRPEVAYSFVDLVSPSPEGLDEEMKEQ 539 T+V+P V L S + D L L+RRPE+ YS + + P+PE L E++ EQ Sbjct: 486 NTRVRPEMAHVQEVLRNAGSPELTDVIELAQLLRRPEINYSHIAQMVPAPEALPEDVTEQ 545 Query: 540 VEIQIKYAGYIEKQLLHVEKLQKMEKKKIPDDINYNEIHGLAMEARQKLTKIAPISIGQA 599 VEIQIKY GYI+K L VE+++KME+++IP DI+Y++I GL+ E+R +TKI P++IGQA Sbjct: 546 VEIQIKYDGYIKKSLQQVERMKKMEERRIPTDIDYHQISGLSKESRDNMTKIRPLNIGQA 605 Query: 600 SRIAGVTPADISILLVHLEHYNRVTAAK 627 +RIAGVTPADIS+L+V+LE Y RV A+ Sbjct: 606 ARIAGVTPADISVLMVYLE-YKRVGVAE 632 >Q9RCA8.2 MNMG_BACHD tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG Length = 632 Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/621 (65%), Positives = 486/621 (78%), Gaps = 2/621 (0%) Query: 1 MSYDGGSYDVVVIXXXXXXXXXXXXXXXXXCRTLMITINLDMVAFMPCNPSIGGPAKGHV 60 MSY GG +DV+V+ TLM+T+NLD VAFMPCNPS+GGPAKG V Sbjct: 1 MSYQGGEFDVIVVGAGHAGVEAGLAAARMGANTLMLTLNLDAVAFMPCNPSVGGPAKGIV 60 Query: 61 VREIDALGGEMGRNIDKTFIQLRMLNTGKGPAVHALRAQADKFLYQHAMKETMENTPNLT 120 VREIDALGGEM RNIDKT IQ+RMLNTGKGPAV ALRAQADKFLYQH MK+T+E NL Sbjct: 61 VREIDALGGEMARNIDKTHIQMRMLNTGKGPAVRALRAQADKFLYQHEMKKTIEEEENLL 120 Query: 121 LRQGMVEELIVENGRCAGVITKTGTVYHSKTVILTTGTYLRGKVIMGELTYESGPNNQQP 180 LRQGMVE LI+E+G C GVIT TG Y +K V++TTGTYLRGK+I+G+L YESGPNN QP Sbjct: 121 LRQGMVERLIIEDGECRGVITNTGAEYRAKAVVVTTGTYLRGKIIIGDLAYESGPNNMQP 180 Query: 181 SVRLSENLRELGFDLVRFKTGTPPRVHKDTIDFSKTEIQPGDEKPKFFSFETKSSDNEQL 240 S+ LS +L+ELGF++VRFKTGTPPRV+ +TID+ KTEIQPGDE P+ FS+ET +QL Sbjct: 181 SINLSYHLQELGFEMVRFKTGTPPRVNGETIDYDKTEIQPGDEVPRAFSYETTKYITDQL 240 Query: 241 PCWLTYTSEVTHQIINDNLHRAPMFTGIIEGTGPRYCPSIEDKVVRFSDKSQHQIFLEPE 300 PCWLTYT + THQIINDNL R+PM++G+IEGTGPRYCPSIEDK+VRF+DK +HQIFLEPE Sbjct: 241 PCWLTYTGDKTHQIINDNLGRSPMYSGMIEGTGPRYCPSIEDKIVRFNDKPRHQIFLEPE 300 Query: 301 GKNTAEYYVQGLSTSLPEDVQLAILRSIPGMEKVEMMRNGYAIEYDAMVPTQLWPSLETK 360 G++T+E YVQGLSTSLPEDVQL +L+SIPG+EK MMR GYAIEYDA+VPTQLWP+LETK Sbjct: 301 GRHTSEVYVQGLSTSLPEDVQLDVLKSIPGLEKARMMRPGYAIEYDAIVPTQLWPTLETK 360 Query: 361 RLPGLFTAGQINGTSGYEEXXXXXXXXXXXXXRKVQEKEPVVLDRSQGYIGVLIDDLVTK 420 ++PGLFTAGQINGTSGYEE +VQ K+ ++LDRS+ YIGVLIDDLVTK Sbjct: 361 KVPGLFTAGQINGTSGYEEAAGQGIMAGINAALRVQGKDGLILDRSEAYIGVLIDDLVTK 420 Query: 421 GTNEPYRLLTSRAEYRLLLRHDNADLRLTPIGYEIGLIPKQRYEAFLDKKXXXXXXXXXX 480 GTNEPYRLLTSRAEYRLLLRHDNADLRLT GYEIGLI ++RYE F +KK Sbjct: 421 GTNEPYRLLTSRAEYRLLLRHDNADLRLTEKGYEIGLIARERYERFCEKKAQIAAEKKRL 480 Query: 481 XXTKVKPV-EVNAALAEYESAPIVDGSNLLTLMRRPEVAYSFVDLVSPSPEG-LDEEMKE 538 VKP EVNA L E SAP+ + ++RPEV Y V V P+PE L ++ E Sbjct: 481 ESITVKPSKEVNALLEEVGSAPLKEAVQANVFLKRPEVTYEHVAKVIPAPEQELSADVAE 540 Query: 539 QVEIQIKYAGYIEKQLLHVEKLQKMEKKKIPDDINYNEIHGLAMEARQKLTKIAPISIGQ 598 QVEIQIKY GYI K L VE+ +KM KKIP+D++Y+ I+GLA EA+QKL+++ P+S+GQ Sbjct: 541 QVEIQIKYEGYISKMLQQVERAKKMNDKKIPEDLDYDAINGLATEAKQKLSEVRPLSVGQ 600 Query: 599 ASRIAGVTPADISILLVHLEH 619 ASR++GV P+DISILLV+LE Sbjct: 601 ASRVSGVNPSDISILLVYLEQ 621 >Q65CN2.1 MNMG_BACLD tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG Length = 628 Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/620 (65%), Positives = 484/620 (78%), Gaps = 1/620 (0%) Query: 1 MSYDGGSYDVVVIXXXXXXXXXXXXXXXXXCRTLMITINLDMVAFMPCNPSIGGPAKGHV 60 M Y+ G YDVVV+ +TL++TINLDMVAFMPCNPS+GGPAKG V Sbjct: 1 MGYEAGQYDVVVVGAGHAGVEAALASARQGAKTLVLTINLDMVAFMPCNPSVGGPAKGIV 60 Query: 61 VREIDALGGEMGRNIDKTFIQLRMLNTGKGPAVHALRAQADKFLYQHAMKETMENTPNLT 120 VREIDALGGEM +NIDKT IQ+R+LNTGKGPAV ALRAQADKF YQH MK+T+EN PNLT Sbjct: 61 VREIDALGGEMAKNIDKTHIQMRLLNTGKGPAVRALRAQADKFQYQHEMKKTLENEPNLT 120 Query: 121 LRQGMVEELIVENGRCAGVITKTGTVYHSKTVILTTGTYLRGKVIMGELTYESGPNNQQP 180 + QGMVE L++E+G C GVIT+TG Y SKTV+LTTGT+LRGK+I+G+L+Y SGPNNQQP Sbjct: 121 MLQGMVERLLIEDGECRGVITQTGAEYRSKTVVLTTGTFLRGKIILGDLSYSSGPNNQQP 180 Query: 181 SVRLSENLRELGFDLVRFKTGTPPRVHKDTIDFSKTEIQPGDEKPKFFSFETKSSDNEQL 240 S++LSE+L ELGFDLVRFKTGTPPRV+ +ID+SKTEIQPGDE P+ FS+ET +QL Sbjct: 181 SIKLSEHLEELGFDLVRFKTGTPPRVNSHSIDYSKTEIQPGDEVPRAFSYETVEYITDQL 240 Query: 241 PCWLTYTSEVTHQIINDNLHRAPMFTGIIEGTGPRYCPSIEDKVVRFSDKSQHQIFLEPE 300 PCWLTYTS TH+II++NLHR+PM++G+I+GTGPRYCPSIEDKVVRF+DK +HQIFLEPE Sbjct: 241 PCWLTYTSPETHEIIDNNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPE 300 Query: 301 GKNTAEYYVQGLSTSLPEDVQLAILRSIPGMEKVEMMRNGYAIEYDAMVPTQLWPSLETK 360 G+NT E YVQGLSTSLPEDVQ +L +IPG+E V+MMR GYAIEYDA+VPTQLWP+LETK Sbjct: 301 GRNTQEVYVQGLSTSLPEDVQRKMLSTIPGLENVQMMRAGYAIEYDAIVPTQLWPTLETK 360 Query: 361 RLPGLFTAGQINGTSGYEEXXXXXXXXXXXXXRKVQEKEPVVLDRSQGYIGVLIDDLVTK 420 ++PGLFTAGQINGTSGYEE RK KE V+L RS YIGVLIDDLVTK Sbjct: 361 KIPGLFTAGQINGTSGYEEAAGQGIMAGINAGRKALGKEEVILSRSDAYIGVLIDDLVTK 420 Query: 421 GTNEPYRLLTSRAEYRLLLRHDNADLRLTPIGYEIGLIPKQRYEAFLDKKXXXXXXXXXX 480 GTNEPYRLLTSRAEYRLLLRHDNADLRLT IGY+IGLI ++RY+ F +KK Sbjct: 421 GTNEPYRLLTSRAEYRLLLRHDNADLRLTEIGYQIGLISEERYQKFQEKKAAIEAEKKRL 480 Query: 481 XXTKVKPVEVNAA-LAEYESAPIVDGSNLLTLMRRPEVAYSFVDLVSPSPEGLDEEMKEQ 539 +KP + N + + + DG LM+RPE+ Y V ++P + + ++ EQ Sbjct: 481 HSVIIKPTKENQEYIRSLGGSELKDGIRATDLMKRPEMNYETVTALAPPEQKVAGDVAEQ 540 Query: 540 VEIQIKYAGYIEKQLLHVEKLQKMEKKKIPDDINYNEIHGLAMEARQKLTKIAPISIGQA 599 VEIQIKY GYIEK L VEKL+KME KKIPD I+Y+ I G+A EARQKL ++ P+S+ QA Sbjct: 541 VEIQIKYEGYIEKSLQQVEKLKKMENKKIPDRIDYDAIKGIATEARQKLKEVRPLSVAQA 600 Query: 600 SRIAGVTPADISILLVHLEH 619 SRI+GV PADISILLV+LE Sbjct: 601 SRISGVNPADISILLVYLEQ 620 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,511,939,278 Number of extensions: 145649500 Number of successful extensions: 343979 Number of sequences better than 1.0e-05: 1561 Number of HSP's gapped: 340013 Number of HSP's successfully gapped: 1619 Length of query: 628 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 486 Effective length of database: 1,722,912,073 Effective search space: 837335267478 Effective search space used: 837335267478 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)