BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0019.p (274 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8S9.1 B3K8S9_9BACI ParB-like partition protein 474 e-132 B1DC13.1 B1DC13_9BACL ParB-like partition protein 392 e-107 C0ZA61.1 C0ZA61_BREBN Nucleoid occlusion protein 367 e-100 Q9K5M9.1 NOC_BACHD Nucleoid occlusion protein 340 6e-92 Q5WAG6.1 NOC_BACSK Nucleoid occlusion protein 328 2e-88 >B3K8S9.1 B3K8S9_9BACI ParB-like partition protein Length = 272 Score = 474 bits (1219), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/272 (84%), Positives = 253/272 (93%), Gaps = 1/272 (0%) Query: 4 MKEQFTKLFGFT-ERSSGEEVKQIPVHEVISSPYQPRTIFDDEKIDELCQTIKTHGVIQP 62 MKEQF++LFG ER+ G+EVKQIPV+EV+SSPYQPRTIFDDEKIDEL QTIKTHGVIQP Sbjct: 1 MKEQFSRLFGLAAERNQGDEVKQIPVNEVVSSPYQPRTIFDDEKIDELLQTIKTHGVIQP 60 Query: 63 IVVRVRDSLYEIIAGERRWRAVKKLGMETIPAIVREFNDSQAASIALIENLQREGLTSIE 122 IVVRVR+ +YEIIAGERRWRAVKKLG++TIPAIVREFNDSQAASIALIENLQREGLTSIE Sbjct: 61 IVVRVRNGVYEIIAGERRWRAVKKLGLDTIPAIVREFNDSQAASIALIENLQREGLTSIE 120 Query: 123 EAIAYQKLIDLHQLTQESLAQRLGKSQSTIANKIRLLQLPEQVKTALMERQITERHARSL 182 EA+AYQKLIDLHQLTQESLAQRLGKSQSTIANKIRLLQLPE K ALMER++TERHAR+L Sbjct: 121 EAVAYQKLIDLHQLTQESLAQRLGKSQSTIANKIRLLQLPEAAKVALMERKVTERHARAL 180 Query: 183 LSLDSVEMQLKVLGEIIAKGLNVKQTEARIAFYKEVSKTKKSKRVSYTKDVRLALNTIRQ 242 LSLD+ E QLKVL EII K LNVKQTEARIAFYKEV+ KK+KR+SY+KDVRLALNTIRQ Sbjct: 181 LSLDNEETQLKVLDEIITKELNVKQTEARIAFYKEVTTMKKAKRISYSKDVRLALNTIRQ 240 Query: 243 SIDMVTGSGMEIKTSENDRGDHYEIVIQIPKR 274 SIDMV+GSGM IKT+END DHYEIVI+IPKR Sbjct: 241 SIDMVSGSGMAIKTTENDHEDHYEIVIKIPKR 272 >B1DC13.1 B1DC13_9BACL ParB-like partition protein Length = 306 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/274 (70%), Positives = 229/274 (83%), Gaps = 1/274 (0%) Query: 1 MNGMKEQFTKLFGFTERSSG-EEVKQIPVHEVISSPYQPRTIFDDEKIDELCQTIKTHGV 59 ++ MKE F++LFG +++ SG EEV+QIP+ ++ +SP+QPRTIFDDE+IDELCQTIKTHGV Sbjct: 32 VDNMKESFSRLFGLSDQRSGQEEVRQIPIQDIDTSPFQPRTIFDDERIDELCQTIKTHGV 91 Query: 60 IQPIVVRVRDSLYEIIAGERRWRAVKKLGMETIPAIVREFNDSQAASIALIENLQREGLT 119 IQPIVVR R+ YEIIAGERRWRAV KLG +TIPAI+REFNDSQ ASIALIENLQRE LT Sbjct: 92 IQPIVVRARNGRYEIIAGERRWRAVTKLGYDTIPAIIREFNDSQTASIALIENLQRENLT 151 Query: 120 SIEEAIAYQKLIDLHQLTQESLAQRLGKSQSTIANKIRLLQLPEQVKTALMERQITERHA 179 +IEEA+AYQKLI+LH+LTQESLAQRLGKSQSTIANK+RLL L + VK AL R+I+ERHA Sbjct: 152 AIEEAVAYQKLIELHELTQESLAQRLGKSQSTIANKLRLLGLNDTVKEALASRKISERHA 211 Query: 180 RSLLSLDSVEMQLKVLGEIIAKGLNVKQTEARIAFYKEVSKTKKSKRVSYTKDVRLALNT 239 R+LLSLD+ E+Q +VL EII K LNVKQTE RIA KE K K++KR + K+ RLA NT Sbjct: 212 RALLSLDTEELQNQVLEEIITKELNVKQTENRIASLKEEPKAKQTKRFAMPKNTRLAFNT 271 Query: 240 IRQSIDMVTGSGMEIKTSENDRGDHYEIVIQIPK 273 IRQ++ MV+ +GMEIK E D GD YEI I IPK Sbjct: 272 IRQAVQMVSSTGMEIKADEKDLGDFYEITIHIPK 305 >C0ZA61.1 C0ZA61_BREBN Nucleoid occlusion protein Length = 285 Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust. Identities = 173/277 (62%), Positives = 225/277 (81%), Gaps = 6/277 (2%) Query: 3 GMKEQFTKLFGFTERSSGEEVKQIPVHEVISSPYQPRTIFDDEKIDELCQTIKTHGVIQP 62 +K+ F+++FG T+++ EE+KQIPV E++ +PYQPRT+FDDEKIDELCQTI+THG+IQP Sbjct: 2 AVKDSFSRIFGLTDKTDNEEIKQIPVEEIVPNPYQPRTVFDDEKIDELCQTIRTHGLIQP 61 Query: 63 IVVRVRDSLYEIIAGERRWRAVKKLGMETIPAIVREFNDSQAASIALIENLQREGLTSIE 122 IVVRVRD YE+IAGERR RA +KLGME IPAIV+EFNDSQ ASIALIENLQREGLT+IE Sbjct: 62 IVVRVRDGRYELIAGERRLRATRKLGMERIPAIVKEFNDSQTASIALIENLQREGLTAIE 121 Query: 123 EAIAYQKLIDLHQLTQESLAQRLGKSQSTIANKIRLLQLPEQVKTALMERQITERHARSL 182 EA+AYQKLIDLH LTQESLAQRLGK QSTIANK+RLL LP+ ++ AL+ RQ+TERHAR+L Sbjct: 122 EAVAYQKLIDLHNLTQESLAQRLGKGQSTIANKLRLLHLPQGIQDALLSRQVTERHARAL 181 Query: 183 LSLDSVEMQLKVLGEIIAKGLNVKQTEARIAFYKEVSKTKKSKR------VSYTKDVRLA 236 + L E+Q KVL EI+ + NVKQTE R+ E+++ KS++ ++++D R+A Sbjct: 182 IPLKDPELQNKVLLEILEREWNVKQTEVRVKQLLELAENPKSEKDAKPRWKAFSRDTRIA 241 Query: 237 LNTIRQSIDMVTGSGMEIKTSENDRGDHYEIVIQIPK 273 +NT+RQSIDMV +G+ ++T+E D + Y+ I+IPK Sbjct: 242 INTVRQSIDMVIQTGLPVETAEEDHDEFYQFTIRIPK 278 >Q9K5M9.1 NOC_BACHD Nucleoid occlusion protein Length = 283 Score = 340 bits (873), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 170/282 (60%), Positives = 219/282 (77%), Gaps = 11/282 (3%) Query: 4 MKEQFTKLFGF-------TERSSGEEVKQIPVHEVISSPYQPRTIFDDEKIDELCQTIKT 56 MK+ F++LFGF E EEV Q+P+ E++ + +QPRTIFDDE+I+EL QTI+T Sbjct: 1 MKQPFSRLFGFGDKQDQEMETGKQEEVHQLPIKEIVPNRFQPRTIFDDERIEELAQTIRT 60 Query: 57 HGVIQPIVVRVRDSLYEIIAGERRWRAVKKLGMETIPAIVREFNDSQAASIALIENLQRE 116 HG+IQPIVVR R+ YEIIAGERR+RAV LG ETIPAI++EFNDSQ AS+ALIENLQRE Sbjct: 61 HGIIQPIVVRQREGKYEIIAGERRFRAVTLLGWETIPAIIKEFNDSQTASVALIENLQRE 120 Query: 117 GLTSIEEAIAYQKLIDLHQLTQESLAQRLGKSQSTIANKIRLLQLPEQVKTALMERQITE 176 GLT++EEA+AYQKLI+LH LTQESLAQRLGK QSTIANK+RLL L E V+ A+MER+I+E Sbjct: 121 GLTAVEEAVAYQKLIELHGLTQESLAQRLGKGQSTIANKLRLLHLSEPVQQAIMERKISE 180 Query: 177 RHARSLLSLDSVEMQLKVLGEIIAKGLNVKQTEARIAFYKEVSKTKKSK----RVSYTKD 232 RHAR+LLSL ++ K+L EI+ + LNVKQTE R+ E + K K R +Y+KD Sbjct: 181 RHARALLSLKDDALETKLLEEIVEQHLNVKQTEERVKELLEDAPASKPKKKPTRKAYSKD 240 Query: 233 VRLALNTIRQSIDMVTGSGMEIKTSENDRGDHYEIVIQIPKR 274 +R+A+NTIRQS+DMV SG+++ T+E + D Y+ I+IPK+ Sbjct: 241 MRIAMNTIRQSVDMVMKSGLKVDTAEEEHEDFYQFTIRIPKK 282 >Q5WAG6.1 NOC_BACSK Nucleoid occlusion protein Length = 283 Score = 328 bits (842), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 170/282 (60%), Positives = 219/282 (77%), Gaps = 11/282 (3%) Query: 4 MKEQFTKLFGFTER------SSGEEVKQIPVHEVISSPYQPRTIFDDEKIDELCQTIKTH 57 MK+ F++LFG ++ ++ EEV+Q+ + +++ + +QPRT+FD+++I EL QTI+TH Sbjct: 1 MKQSFSRLFGLNDKNDDAELTANEEVQQLAIKDIVPNRFQPRTLFDEDRIAELAQTIRTH 60 Query: 58 GVIQPIVVRVRDSLYEIIAGERRWRAVKKLGMETIPAIVREFNDSQAASIALIENLQREG 117 GVIQPIVVRVRD YEIIAGERRWRAV L ETIPAIV+EFNDSQ ASIALIENLQREG Sbjct: 61 GVIQPIVVRVRDDKYEIIAGERRWRAVTSLQWETIPAIVKEFNDSQTASIALIENLQREG 120 Query: 118 LTSIEEAIAYQKLIDLHQLTQESLAQRLGKSQSTIANKIRLLQLPEQVKTALMERQITER 177 LT+IEEA AY KLI++H LTQESLAQRLGK QSTIANK+RLL LP+ V+ A++ R I+ER Sbjct: 121 LTAIEEATAYAKLIEIHNLTQESLAQRLGKGQSTIANKLRLLHLPQAVQDAILNRDISER 180 Query: 178 HARSLLSLDSVEMQLKVLGEIIAKGLNVKQTEARI-AFYK----EVSKTKKSKRVSYTKD 232 HAR+L++L E Q VL +II + LNVKQTE R+ A++K E K KK KR SY KD Sbjct: 181 HARALIALKDAEAQEAVLKQIIEEQLNVKQTEERVKAYFKTAEEEAPKKKKPKRKSYPKD 240 Query: 233 VRLALNTIRQSIDMVTGSGMEIKTSENDRGDHYEIVIQIPKR 274 +R+A+NTIRQS+DMV SG+++ T E D + Y+ I+IPK+ Sbjct: 241 MRIAMNTIRQSVDMVMKSGLKVDTDEEDNEEFYQFTIRIPKK 282 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.132 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,366,550,006 Number of extensions: 49153812 Number of successful extensions: 185870 Number of sequences better than 1.0e-05: 2026 Number of HSP's gapped: 184118 Number of HSP's successfully gapped: 2033 Length of query: 274 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 140 Effective length of database: 1,798,280,193 Effective search space: 251759227020 Effective search space used: 251759227020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)