BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0018.p (256 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8S7.1 B3K8S7_9BACI Cobyrinic acid ac-diamide synthase 450 e-125 B1DC14.1 B1DC14_9BACL Cobyrinic acid ac-diamide synthase 440 e-122 C0ZA60.1 C0ZA60_BREBN Sporulation initiation inhibitor protein 415 e-114 Q62N66.1 Q62N66_BACLD Chromosome partitioning protein transcript... 401 e-110 C2C3Y7.1 C2C3Y7_LISGR Chromosome partitioning protein transcript... 401 e-110 >B3K8S7.1 B3K8S7_9BACI Cobyrinic acid ac-diamide synthase Length = 253 Score = 450 bits (1157), Expect = e-125, Method: Compositional matrix adjust. Identities = 225/253 (88%), Positives = 239/253 (94%) Query: 4 VSKIIAIANQKGGVGKTTTSVNLGAGMATLGKRVLLVDIDPQGNTTSGVGINKADVANCI 63 +SKIIAIANQKGGVGKTTTSVNLGAG+A+LGKRVLLVDIDPQGNTTSGVGINKADVANCI Sbjct: 1 MSKIIAIANQKGGVGKTTTSVNLGAGLASLGKRVLLVDIDPQGNTTSGVGINKADVANCI 60 Query: 64 YDILINEANPQETILETQIEGLHIIPATIQLAGAEIELVSTISRELKLKKALNAVKSNYD 123 YDI+INE +P++ I T IEGL IIPATIQLAGAEIELV TISRE++LKK+L VK YD Sbjct: 61 YDIIINEVHPKDAICGTNIEGLDIIPATIQLAGAEIELVPTISREVRLKKSLQLVKPQYD 120 Query: 124 YIIIDCPPSLGILTINSLTAADSVIIPIQCEYYALEGLSQLLNTVRLVQKNLNPHLKIEG 183 YI+IDCPPSLGILTINSLTAADSVIIPIQCEYYALEGLSQLLNTVRLVQK+LN LKIEG Sbjct: 121 YILIDCPPSLGILTINSLTAADSVIIPIQCEYYALEGLSQLLNTVRLVQKHLNTSLKIEG 180 Query: 184 VLLTMLDARTNLGIQVIEEVKKYFQEKVYRTIIPRNVRLSEAPSHGQSIITYDNRSKGAE 243 VLLTMLDARTNLGIQVIEEVKKYFQEKVY+TIIPRN+RLSEAPSHGQSIITYD RSKGAE Sbjct: 181 VLLTMLDARTNLGIQVIEEVKKYFQEKVYKTIIPRNIRLSEAPSHGQSIITYDPRSKGAE 240 Query: 244 VYLELAKEVISYE 256 VYLELAKEVISYE Sbjct: 241 VYLELAKEVISYE 253 >B1DC14.1 B1DC14_9BACL Cobyrinic acid ac-diamide synthase Length = 257 Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust. Identities = 215/253 (84%), Positives = 239/253 (94%) Query: 4 VSKIIAIANQKGGVGKTTTSVNLGAGMATLGKRVLLVDIDPQGNTTSGVGINKADVANCI 63 +SKIIAIANQKGGVGKTTTSVNLGA +ATLG+RVLLVDIDPQGNTTSG+GINKADV NCI Sbjct: 1 MSKIIAIANQKGGVGKTTTSVNLGACLATLGRRVLLVDIDPQGNTTSGIGINKADVNNCI 60 Query: 64 YDILINEANPQETILETQIEGLHIIPATIQLAGAEIELVSTISRELKLKKALNAVKSNYD 123 YD+LIN+ +P++ + ET+I+GL IIPATIQLAGAEIE+V TISREL+LKKAL+ VK +D Sbjct: 61 YDVLINDVHPKDAMFETKIDGLKIIPATIQLAGAEIEMVPTISRELRLKKALSLVKDQFD 120 Query: 124 YIIIDCPPSLGILTINSLTAADSVIIPIQCEYYALEGLSQLLNTVRLVQKNLNPHLKIEG 183 YI+IDCPPSLG+LTINSLTAADSVIIPIQCEYYALEGLSQLLNTVRLVQK+LN L+IEG Sbjct: 121 YILIDCPPSLGLLTINSLTAADSVIIPIQCEYYALEGLSQLLNTVRLVQKHLNTALQIEG 180 Query: 184 VLLTMLDARTNLGIQVIEEVKKYFQEKVYRTIIPRNVRLSEAPSHGQSIITYDNRSKGAE 243 VLLTMLDARTNLGIQVIEEVKKYFQ+KVY+TIIPRNVRLSEAPSHG++IITYD RSKGAE Sbjct: 181 VLLTMLDARTNLGIQVIEEVKKYFQQKVYQTIIPRNVRLSEAPSHGEAIITYDPRSKGAE 240 Query: 244 VYLELAKEVISYE 256 VYLELAKEVI YE Sbjct: 241 VYLELAKEVIMYE 253 >C0ZA60.1 C0ZA60_BREBN Sporulation initiation inhibitor protein Length = 252 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 201/250 (80%), Positives = 227/250 (90%) Query: 4 VSKIIAIANQKGGVGKTTTSVNLGAGMATLGKRVLLVDIDPQGNTTSGVGINKADVANCI 63 + KIIA+ANQKGGVGKTTTSVNL A +A LGK+VLLVDIDPQGN TSG+G+NKADV CI Sbjct: 1 MGKIIAVANQKGGVGKTTTSVNLSACLAALGKKVLLVDIDPQGNATSGIGVNKADVKYCI 60 Query: 64 YDILINEANPQETILETQIEGLHIIPATIQLAGAEIELVSTISRELKLKKALNAVKSNYD 123 YD+LIN+ NP + L T+IEGL IIPATIQLAGAEIELV TISRE++LKKAL VK YD Sbjct: 61 YDVLINDINPVDATLPTEIEGLMIIPATIQLAGAEIELVPTISREVRLKKALEVVKDKYD 120 Query: 124 YIIIDCPPSLGILTINSLTAADSVIIPIQCEYYALEGLSQLLNTVRLVQKNLNPHLKIEG 183 Y+IIDCPPSLGILT+NSLTA+DSV+IPIQCEYYALEGLSQLLNT+RLVQK+LN L IEG Sbjct: 121 YVIIDCPPSLGILTVNSLTASDSVLIPIQCEYYALEGLSQLLNTIRLVQKHLNSQLAIEG 180 Query: 184 VLLTMLDARTNLGIQVIEEVKKYFQEKVYRTIIPRNVRLSEAPSHGQSIITYDNRSKGAE 243 V+LTMLDARTNLG+QVIEEVKKYFQ+KVY+TIIPRNVRLSEAPSHGQ+IITYD RS+GAE Sbjct: 181 VVLTMLDARTNLGLQVIEEVKKYFQDKVYKTIIPRNVRLSEAPSHGQAIITYDPRSRGAE 240 Query: 244 VYLELAKEVI 253 VY +LAKEV+ Sbjct: 241 VYTDLAKEVV 250 >Q62N66.1 Q62N66_BACLD Chromosome partitioning protein transcriptional regulator Length = 262 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 192/250 (76%), Positives = 226/250 (90%) Query: 3 LVSKIIAIANQKGGVGKTTTSVNLGAGMATLGKRVLLVDIDPQGNTTSGVGINKADVANC 62 +V KIIAI NQKGGVGKTTTSVNLGA +A +GKRVLLVDIDPQGN TSG+G+ KADV C Sbjct: 9 IVGKIIAITNQKGGVGKTTTSVNLGACLAYIGKRVLLVDIDPQGNATSGIGVEKADVDQC 68 Query: 63 IYDILINEANPQETILETQIEGLHIIPATIQLAGAEIELVSTISRELKLKKALNAVKSNY 122 +YDIL+++A+ ++ I T +E L +IPATIQLAGAEIELV TISRE++LK+AL +VK NY Sbjct: 69 VYDILVDDADVKDVIKTTSVENLDVIPATIQLAGAEIELVPTISREVRLKRALESVKQNY 128 Query: 123 DYIIIDCPPSLGILTINSLTAADSVIIPIQCEYYALEGLSQLLNTVRLVQKNLNPHLKIE 182 D++IIDCPPSLG+LTIN+LTA+DSV+IP+QCEYYALEGLSQLLN+VRLVQK+LN L I+ Sbjct: 129 DFMIIDCPPSLGLLTINALTASDSVVIPVQCEYYALEGLSQLLNSVRLVQKHLNTDLMID 188 Query: 183 GVLLTMLDARTNLGIQVIEEVKKYFQEKVYRTIIPRNVRLSEAPSHGQSIITYDNRSKGA 242 GVLLTMLDARTNLGIQVIEEVKKYF++KVY+T+IPRNVRLSEAPSHG+ II YD RS+GA Sbjct: 189 GVLLTMLDARTNLGIQVIEEVKKYFRDKVYKTVIPRNVRLSEAPSHGKPIILYDPRSRGA 248 Query: 243 EVYLELAKEV 252 EVYLELAKEV Sbjct: 249 EVYLELAKEV 258 >C2C3Y7.1 C2C3Y7_LISGR Chromosome partitioning protein transcriptional regulator Length = 253 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/252 (75%), Positives = 229/252 (90%) Query: 4 VSKIIAIANQKGGVGKTTTSVNLGAGMATLGKRVLLVDIDPQGNTTSGVGINKADVANCI 63 +SKIIA+ANQKGGVGKTT+SVNL + +A LGK+VLLVDIDPQGN +SGVG+NK +V NCI Sbjct: 1 MSKIIALANQKGGVGKTTSSVNLSSSLAFLGKKVLLVDIDPQGNASSGVGVNKGEVENCI 60 Query: 64 YDILINEANPQETILETQIEGLHIIPATIQLAGAEIELVSTISRELKLKKALNAVKSNYD 123 Y++L+++ ++ +L T+++ L +IPATIQLAGAE+ELV ISRE++LKKA+N VK NYD Sbjct: 61 YNVLVDDVELKDVLLHTELDNLDVIPATIQLAGAEVELVPAISREIRLKKAINTVKDNYD 120 Query: 124 YIIIDCPPSLGILTINSLTAADSVIIPIQCEYYALEGLSQLLNTVRLVQKNLNPHLKIEG 183 YIIIDCPPSLG+LT+N+LTAADSV+IP+QCEYYALEGLSQLLNTVR+VQK+LN L+IEG Sbjct: 121 YIIIDCPPSLGLLTLNALTAADSVLIPVQCEYYALEGLSQLLNTVRIVQKHLNEDLQIEG 180 Query: 184 VLLTMLDARTNLGIQVIEEVKKYFQEKVYRTIIPRNVRLSEAPSHGQSIITYDNRSKGAE 243 VLLTMLDARTNLGIQVIEEVKKYFQ KV++TIIPRNVRLSEAPSHG+ II YD +SKGAE Sbjct: 181 VLLTMLDARTNLGIQVIEEVKKYFQNKVFQTIIPRNVRLSEAPSHGKPIILYDAKSKGAE 240 Query: 244 VYLELAKEVISY 255 VYLELAKEVI++ Sbjct: 241 VYLELAKEVIAH 252 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,346,420,930 Number of extensions: 52241035 Number of successful extensions: 183841 Number of sequences better than 1.0e-05: 4704 Number of HSP's gapped: 180290 Number of HSP's successfully gapped: 4716 Length of query: 256 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 123 Effective length of database: 1,807,701,208 Effective search space: 222347248584 Effective search space used: 222347248584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)