BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0017.p (265 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8S6.1 B3K8S6_9BACI ParB-like partition protein 449 e-124 B1DC15.1 B1DC15_9BACL ParB-like partition protein 362 1e-98 C0ZA59.1 C0ZA59_BREBN Stage 0 sporulation protein J 261 4e-68 B7GMV5.1 B7GMV5_ANOFW Stage 0 sporulation protein J (Antagonist ... 252 3e-65 C5D9Y2.1 C5D9Y2_9BACI ParB-like partition protein 249 2e-64 >B3K8S6.1 B3K8S6_9BACI ParB-like partition protein Length = 279 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 223/263 (84%), Positives = 235/263 (89%) Query: 1 LSINEDDKVVEIPLGQLRANPYQPRKDFNEDAIQELAESIRQHGVIQPIIVRSVLKGYEI 60 LSI++DDKVVEIPL QLRANPYQPRK FN++AIQELAESIRQHGVIQPIIVRSVLKGYEI Sbjct: 16 LSIHDDDKVVEIPLSQLRANPYQPRKTFNDEAIQELAESIRQHGVIQPIIVRSVLKGYEI 75 Query: 61 IAGERRFRASQYCGKATIPAVVRSLSDQQVMEIALIENLQRENLNAMEIAVAYQGLMDQF 120 IAGERRFRASQYCGKATIPAVVRS SDQQVMEIALIENLQRENLNAMEIAVAYQGLM+QF Sbjct: 76 IAGERRFRASQYCGKATIPAVVRSFSDQQVMEIALIENLQRENLNAMEIAVAYQGLMEQF 135 Query: 121 ALTQEELSLKVGKSRSHIANFLRLLSLPEEVKEYVSRGTISMGHARAIVALKDPETVKQL 180 +LTQEELSLKVGKSRSHIANFLRLLSLPEEVKE VSRGT+SMGHARAIV +KDP VKQL Sbjct: 136 SLTQEELSLKVGKSRSHIANFLRLLSLPEEVKENVSRGTLSMGHARAIVGIKDPILVKQL 195 Query: 181 AEQCVEQQWSVRELEEVVKNLDRKPAGAIKAKVVKRDPYIDNVEEQLRERFKTTVXXXXX 240 A+QCVEQ+WSVRELEE VKNLDRKPA K KV RDPYID++EE LRERFKTTV Sbjct: 196 AKQCVEQEWSVRELEEAVKNLDRKPADKAKPKVKNRDPYIDHLEEDLRERFKTTVKIKHN 255 Query: 241 XXXXXXXLNYYSAQDLERLLELL 263 LNYYS QDLERLLELL Sbjct: 256 KDKGKIELNYYSKQDLERLLELL 278 >B1DC15.1 B1DC15_9BACL ParB-like partition protein Length = 285 Score = 362 bits (930), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 184/268 (68%), Positives = 217/268 (80%), Gaps = 3/268 (1%) Query: 1 LSINEDDKVVEIPLGQLRANPYQPRKDFNEDAIQELAESIRQHGVIQPIIVRSVLKGYEI 60 LS++EDDKV+EI L QLR NPYQPRK F++++I+ELAESI+QHGVIQPIIVR+VLKGYEI Sbjct: 16 LSVSEDDKVIEIQLTQLRPNPYQPRKTFDDESIKELAESIKQHGVIQPIIVRTVLKGYEI 75 Query: 61 IAGERRFRASQYCGKATIPAVVRSLSDQQVMEIALIENLQRENLNAMEIAVAYQGLMDQF 120 IAGERRFRASQ CG AT+PAVVR+ SDQQVMEIALIENLQRE+LNA+E A+AYQGLMD+F Sbjct: 76 IAGERRFRASQLCGNATVPAVVRAFSDQQVMEIALIENLQREDLNAIETAMAYQGLMDKF 135 Query: 121 ALTQEELSLKVGKSRSHIANFLRLLSLPEEVKEYVSRGTISMGHARAIVALKDPETVKQL 180 LTQEELS+KVGKSRSHIANFLRLL+LP E+K+ VSRGTISMGHARA+V +KD K + Sbjct: 136 KLTQEELSMKVGKSRSHIANFLRLLALPAEIKDNVSRGTISMGHARALVGIKDAAVQKDM 195 Query: 181 AEQCVEQQWSVRELEEVVKNLD---RKPAGAIKAKVVKRDPYIDNVEEQLRERFKTTVXX 237 A + V WSVR+LEE ++ L+ A KAK KRDPYI+++EE LR+RFKTTV Sbjct: 196 ANRTVSLGWSVRDLEEAIQKLEVKETAEAAKAKAKSKKRDPYIESLEESLRDRFKTTVKI 255 Query: 238 XXXXXXXXXXLNYYSAQDLERLLELLGN 265 L YY+ QDLERLLELL N Sbjct: 256 KQQKDKGKIELQYYNKQDLERLLELLQN 283 >C0ZA59.1 C0ZA59_BREBN Stage 0 sporulation protein J Length = 281 Score = 261 bits (667), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 129/263 (49%), Positives = 187/263 (71%), Gaps = 5/263 (1%) Query: 3 INEDDKVVEIPLGQLRANPYQPRKDFNEDAIQELAESIRQHGVIQPIIVRSVLKGYEIIA 62 I E ++V E+ + ++R NPYQPRK+F + AI+ELA+SI++HG+IQP+IVR +KGYE++A Sbjct: 18 IEEGEQVKEVSINEIRPNPYQPRKEFEQSAIEELAQSIKEHGIIQPLIVRKSIKGYELVA 77 Query: 63 GERRFRASQYCGKATIPAVVRSLSDQQVMEIALIENLQRENLNAMEIAVAYQGLMDQFAL 122 GERR RA++ G +P VV++ +DQQ+MEIALIENLQRENLN +E A AY L+ Sbjct: 78 GERRLRAAKLAGLKEVPVVVKAYTDQQLMEIALIENLQRENLNPLEEAEAYDKLISHHDY 137 Query: 123 TQEELSLKVGKSRSHIANFLRLLSLPEEVKEYVSRGTISMGHARAIVALKDPETVKQLAE 182 TQE+L+ K+GKSR H+AN LRLL LPE++++ VS +SMGH+RA++ + D + +QLA Sbjct: 138 TQEQLAQKIGKSRPHVANMLRLLQLPEKIRKMVSAAELSMGHSRALLGVTDKKVQQQLAN 197 Query: 183 QCVEQQWSVRELEEVVK--NLDRKPAGAIKAKVVKRDPYIDNVEEQLRERFKTTVXXXXX 240 VE+ SVR+LEE+VK N+ R+ K K K +P + +EE+LR RF T+V Sbjct: 198 DVVEKGLSVRQLEEIVKQLNVSRETK---KKKSAKNEPVLIEMEERLRSRFGTSVKIKKG 254 Query: 241 XXXXXXXLNYYSAQDLERLLELL 263 +++YS +DLER++E+L Sbjct: 255 SKRGKIEIDFYSQEDLERIIEML 277 >B7GMV5.1 B7GMV5_ANOFW Stage 0 sporulation protein J (Antagonist of Soj), contain ParB-like nuclease domain Length = 287 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 126/264 (47%), Positives = 186/264 (70%), Gaps = 2/264 (0%) Query: 1 LSINEDDKVVEIPLGQLRANPYQPRKDFNEDAIQELAESIRQHGVIQPIIVRSVLKGYEI 60 L + + V +I + QLR NPYQPRK F+E A++EL +SI +HG++QP+IVR +KGYEI Sbjct: 16 LEAEKGETVQDIEIQQLRPNPYQPRKTFHEQALEELKQSIIEHGIVQPLIVRQTIKGYEI 75 Query: 61 IAGERRFRASQYCGKATIPAVVRSLSDQQVMEIALIENLQRENLNAMEIAVAYQGLMDQF 120 + GERRFRA+Q G T+PAVVR LSD+++MEIAL+ENLQRE+LN +E A AYQ L+ + Sbjct: 76 VVGERRFRAAQLAGLKTVPAVVRELSDEKMMEIALLENLQREDLNPIEEATAYQLLLTKC 135 Query: 121 ALTQEELSLKVGKSRSHIANFLRLLSLPEEVKEYVSRGTISMGHARAIVALKDPETVKQL 180 LTQEEL+ ++GKSR HIAN LRLLSLP +V++ + GT+SMGH RA++ALK+ + + + Sbjct: 136 KLTQEELAKRLGKSRPHIANHLRLLSLPSDVQQMIEEGTLSMGHGRALLALKNKQKLSAV 195 Query: 181 AEQCVEQQWSVRELEEVVKNLDRK-PAGAIKAKVVKRDPYIDNVEEQLRERFKTTVXXXX 239 E+ ++Q +VR+LE +++ L+ P +K K +++ ++ E LRER T+V Sbjct: 196 IERVIQQSLNVRQLEALIQQLNENVPRETLKKK-EEKNIFLTQSEALLRERLGTSVSIKK 254 Query: 240 XXXXXXXXLNYYSAQDLERLLELL 263 + ++S +DL R+L+LL Sbjct: 255 HRKKGKIEIEFFSEEDLTRILQLL 278 >C5D9Y2.1 C5D9Y2_9BACI ParB-like partition protein Length = 285 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 119/264 (45%), Positives = 191/264 (72%), Gaps = 1/264 (0%) Query: 1 LSINEDDKVVEIPLGQLRANPYQPRKDFNEDAIQELAESIRQHGVIQPIIVRSVLKGYEI 60 L++ E++ + E+ + +L NPYQPRK F+++AI+EL +SI QHG++QP+IVR +KG+EI Sbjct: 16 LTLKEEETIKEVDIRELHPNPYQPRKVFHQEAIEELKQSILQHGILQPLIVRKSIKGFEI 75 Query: 61 IAGERRFRASQYCGKATIPAVVRSLSDQQVMEIALIENLQRENLNAMEIAVAYQGLMDQF 120 + GERR+RA++ T+P VVR L+D+Q+ME+AL+ENLQRE+LN +E A+AY+ LM++ Sbjct: 76 VVGERRYRAAKEANLKTVPVVVRELTDEQMMELALLENLQREDLNPIEEAMAYKMLMEKL 135 Query: 121 ALTQEELSLKVGKSRSHIANFLRLLSLPEEVKEYVSRGTISMGHARAIVALKDPETVKQL 180 LTQEE++ +VGKSR HIAN LRLLSLP++V++ + GT+SMGH RA++ LK +K + Sbjct: 136 QLTQEEIASRVGKSRPHIANHLRLLSLPKDVQKMLVDGTLSMGHGRALLGLKHKNKMKFV 195 Query: 181 AEQCVEQQWSVRELEEVVKNLDRKPAGAI-KAKVVKRDPYIDNVEEQLRERFKTTVXXXX 239 ++ + +Q +VR+LE++++ +++ + K K V++ ++ E LRE+F T V Sbjct: 196 VDRIIREQLNVRQLEKLIQEMNKNVSRETPKRKPVEKSVFLKESESLLREKFGTNVTIKQ 255 Query: 240 XXXXXXXXLNYYSAQDLERLLELL 263 + ++S++DLER+LELL Sbjct: 256 TRKKGKIEIEFFSSEDLERILELL 279 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,333,148,299 Number of extensions: 47843708 Number of successful extensions: 161833 Number of sequences better than 1.0e-05: 2049 Number of HSP's gapped: 160008 Number of HSP's successfully gapped: 2049 Length of query: 265 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 132 Effective length of database: 1,807,701,208 Effective search space: 238616559456 Effective search space used: 238616559456 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)