BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0014.p (202 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8S3.1 B3K8S3_9BACI Sporulation protein YyaC 295 2e-78 B1DC19.1 B1DC19_9BACL Sporulation protein YyaC 243 1e-62 A6CPP5.1 A6CPP5_9BACI Putative uncharacterized protein 213 1e-53 Q9K5N4.1 Q9K5N4_BACHD BH4054 protein 207 3e-52 Q65CN9.1 Q65CN9_BACLD YyaC 206 1e-51 >B3K8S3.1 B3K8S3_9BACI Sporulation protein YyaC Length = 201 Score = 295 bits (755), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 144/202 (71%), Positives = 167/202 (82%), Gaps = 2/202 (0%) Query: 1 MNSSSKAVPLPEPSCLKISHADPNIYSAITHRLLFHFSRTNAD-TPIIIVCVGTDRSTGD 59 MN SK PE S LKI H DPNI+SAI HRLLFH S P++IVC+GTDRSTGD Sbjct: 1 MNRLSKITSRPEASSLKIPHTDPNIHSAIIHRLLFHLSDARIQHRPLVIVCIGTDRSTGD 60 Query: 60 SLGPLVGTALARFHSPLFHLYGTLDEPVHAVNLEETLTLIHEKHNNPFIIGIDACLGHSA 119 LGPLVGT+LAR++S LFHLYGTLDEPVHA+NL++TLT I+EK +NPF+IGIDACLG S Sbjct: 61 CLGPLVGTSLARYNSSLFHLYGTLDEPVHAMNLKDTLTAIYEKFDNPFVIGIDACLGQST 120 Query: 120 SVGCIQVVDGPLRPGAGVNKQLPPVGDIHLTGIVNVGGFMEYFVLQNTRLSLVMRLSDII 179 SVG IQ+ DGPL+PGAGV+K+LPPVGDIH+TGIVNVGGFMEYFVLQNTRLSLVMRLSDII Sbjct: 121 SVGSIQIADGPLKPGAGVHKELPPVGDIHVTGIVNVGGFMEYFVLQNTRLSLVMRLSDII 180 Query: 180 ASSLYSALKQWNLHASSAATQE 201 A+ L+ +K+WN +S A QE Sbjct: 181 ATCLFVGIKEWN-RSSLLAAQE 201 >B1DC19.1 B1DC19_9BACL Sporulation protein YyaC Length = 205 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 112/186 (60%), Positives = 148/186 (79%), Gaps = 1/186 (0%) Query: 16 LKISHADPNIYSAITHRLLFHFSRTNADTPIIIVCVGTDRSTGDSLGPLVGTALARFHSP 75 LK+ + + N I +RL +A PI+IVCVGTDRSTGDSLGPL+GT+L+++ SP Sbjct: 11 LKVPYTEANAVGQIVNRLSLMIDEMSAGRPIVIVCVGTDRSTGDSLGPLIGTSLSKYQSP 70 Query: 76 LFHLYGTLDEPVHAVNLEETLTLIHEKHNNPFIIGIDACLGHSASVGCIQVVDGPLRPGA 135 F +YGTL+EPVHA+NLEETL I+ + PF+IGIDACLG +S+G IQ+ GP+RPGA Sbjct: 71 YFSIYGTLEEPVHAMNLEETLHQINRTYQKPFVIGIDACLGQVSSIGSIQLGTGPVRPGA 130 Query: 136 GVNKQLPPVGDIHLTGIVNVGGFMEYFVLQNTRLSLVMRLSDIIASSLYSALKQWNLHAS 195 GVNK+LPPVGDIH+TGIVNVGGFMEYFVLQNTRL LVM+++DIIASS++S++ ++H S Sbjct: 131 GVNKELPPVGDIHITGIVNVGGFMEYFVLQNTRLHLVMKMADIIASSVFSSIMN-SIHVS 189 Query: 196 SAATQE 201 + + ++ Sbjct: 190 ARSREQ 195 >A6CPP5.1 A6CPP5_9BACI Putative uncharacterized protein Length = 209 Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 103/170 (60%), Positives = 131/170 (77%), Gaps = 2/170 (1%) Query: 17 KISHADPNIYSAITHRLLFHFSRTNADTPIIIVCVGTDRSTGDSLGPLVGTALARFHSPL 76 ++ H D ++++ LL A P++IVC+GTDRSTGDSLGPLVGT L + Sbjct: 19 RVLHDDEKAAASLSEELLTMLP--TALRPVVIVCIGTDRSTGDSLGPLVGTFLDEKITDG 76 Query: 77 FHLYGTLDEPVHAVNLEETLTLIHEKHNNPFIIGIDACLGHSASVGCIQVVDGPLRPGAG 136 FH+YGTLDEP+HAVNLEE L I EKH+NPFIIGIDACLG SVG IQ+ +GP++PGAG Sbjct: 77 FHIYGTLDEPIHAVNLEERLAEIREKHHNPFIIGIDACLGRLKSVGAIQLGNGPVKPGAG 136 Query: 137 VNKQLPPVGDIHLTGIVNVGGFMEYFVLQNTRLSLVMRLSDIIASSLYSA 186 VNK+LP VGDIH+TGIVNV GFME+FVLQNTRL+LV++++ II+ ++ A Sbjct: 137 VNKELPDVGDIHITGIVNVSGFMEFFVLQNTRLNLVLKMARIISEGIHLA 186 >Q9K5N4.1 Q9K5N4_BACHD BH4054 protein Length = 216 Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 101/179 (56%), Positives = 129/179 (72%), Gaps = 1/179 (0%) Query: 12 EPSCLKISHADPNIYSAITHRLLFHFSRTNADTPIIIVCVGTDRSTGDSLGPLVGTALAR 71 +P ++ DP + +LL H S + ++IVC+GTDRSTGD+LGP+VGTAL + Sbjct: 10 KPPPFRVHMDDPQASDQLVEQLLTHVS-SYRHRELVIVCIGTDRSTGDALGPIVGTALTK 68 Query: 72 FHSPLFHLYGTLDEPVHAVNLEETLTLIHEKHNNPFIIGIDACLGHSASVGCIQVVDGPL 131 FH+YGTL +PVHAVNLEE L LI +KH PFII IDACLG +SVG + + GP+ Sbjct: 69 ECLNCFHVYGTLADPVHAVNLEEKLKLIEKKHRRPFIIAIDACLGKLSSVGKVSLAAGPV 128 Query: 132 RPGAGVNKQLPPVGDIHLTGIVNVGGFMEYFVLQNTRLSLVMRLSDIIASSLYSALKQW 190 +PGA VNK+LP VGD+HLTGIVN+GG MEYFVLQNTRL VM+L+D I+SSL +Q+ Sbjct: 129 QPGAAVNKKLPAVGDVHLTGIVNIGGMMEYFVLQNTRLHTVMQLADTISSSLVKLDQQF 187 >Q65CN9.1 Q65CN9_BACLD YyaC Length = 205 Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 100/172 (58%), Positives = 123/172 (71%), Gaps = 1/172 (0%) Query: 12 EPSCLKISHADPNIYSAITHRLLFHFSRTNADTPIIIVCVGTDRSTGDSLGPLVGTALAR 71 EP ISH DP I ++L + + D PI+IVC+GTDRSTGDSLGPLVG L+ Sbjct: 11 EPMNEYISHTDPLAVKQI-EKVLSVYLKEAGDRPIVIVCIGTDRSTGDSLGPLVGMKLSA 69 Query: 72 FHSPLFHLYGTLDEPVHAVNLEETLTLIHEKHNNPFIIGIDACLGHSASVGCIQVVDGPL 131 FH+YGTL +PVHAVNL E L IH++H NPF+I IDACLG + SVG Q+ GPL Sbjct: 70 KQLTRFHVYGTLADPVHAVNLNEKLDHIHQQHQNPFMIAIDACLGRTKSVGSFQIGKGPL 129 Query: 132 RPGAGVNKQLPPVGDIHLTGIVNVGGFMEYFVLQNTRLSLVMRLSDIIASSL 183 +PGAGV K LP VG +H+ GIVNV GFMEYFVLQNTRL+LVM +++++A L Sbjct: 130 KPGAGVQKSLPEVGHVHINGIVNVSGFMEYFVLQNTRLNLVMSMANVLADGL 181 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,228,746,807 Number of extensions: 50325151 Number of successful extensions: 98358 Number of sequences better than 1.0e-05: 220 Number of HSP's gapped: 98283 Number of HSP's successfully gapped: 220 Length of query: 202 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 73 Effective length of database: 1,845,385,268 Effective search space: 134713124564 Effective search space used: 134713124564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)