BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0011.p
         (69 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8S0.1 B3K8S0_9BACI Putative uncharacterized protein                117   3e-25
B1DC22.1 B1DC22_9BACL Putative uncharacterized protein                116   6e-25
C0ZA52.1 C0ZA52_BREBN Putative uncharacterized protein                 98   3e-19
A3IAT6.1 A3IAT6_9BACI Putative uncharacterized protein                 96   1e-18
B1HPL5.1 B1HPL5_LYSSC Putative uncharacterized protein                 95   2e-18

>B3K8S0.1 B3K8S0_9BACI Putative uncharacterized protein
          Length = 73

 Score =  117 bits (293), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/63 (88%), Positives = 57/63 (90%)

Query: 1  MERKIFGLGDIVLMKKPHPCGTNEMEIIRMGMDIRIKCTGCHHSVLIPRAKFEKNMKKVL 60
          MERK+F LGDIV MKKPHPCG NEMEIIRMGMDIRIKCT C HSVLIPR KFEKNMKKVL
Sbjct: 1  MERKVFQLGDIVQMKKPHPCGNNEMEIIRMGMDIRIKCTKCQHSVLIPRVKFEKNMKKVL 60

Query: 61 RSA 63
          RSA
Sbjct: 61 RSA 63


>B1DC22.1 B1DC22_9BACL Putative uncharacterized protein
          Length = 72

 Score =  116 bits (290), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/71 (80%), Positives = 61/71 (85%), Gaps = 2/71 (2%)

Query: 1  MERKIFGLGDIVLMKKPHPCGTNEMEIIRMGMDIRIKCTGCHHSVLIPRAKFEKNMKKVL 60
          MERK F LGDIV MKK HPCG+NEMEIIRMGMDIRIKC GC HSVL+PRAKFEKNMKKVL
Sbjct: 1  MERKQFELGDIVQMKKQHPCGSNEMEIIRMGMDIRIKCVGCKHSVLVPRAKFEKNMKKVL 60

Query: 61 RSAG--GENHE 69
          RSA   G+N +
Sbjct: 61 RSAADSGQNEQ 71


>C0ZA52.1 C0ZA52_BREBN Putative uncharacterized protein
          Length = 69

 Score = 97.8 bits (242), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/66 (68%), Positives = 54/66 (81%)

Query: 1  MERKIFGLGDIVLMKKPHPCGTNEMEIIRMGMDIRIKCTGCHHSVLIPRAKFEKNMKKVL 60
          MERK FGLGD+V MKKPHPCGTN  ++IRMGMD+RIKCTGC HSV+I R +FE+ +KK+L
Sbjct: 1  MERKQFGLGDVVQMKKPHPCGTNAWKVIRMGMDVRIKCTGCDHSVMIGRLEFERKLKKIL 60

Query: 61 RSAGGE 66
            A  E
Sbjct: 61 IRAEEE 66


>A3IAT6.1 A3IAT6_9BACI Putative uncharacterized protein
          Length = 66

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 51/64 (79%)

Query: 1  MERKIFGLGDIVLMKKPHPCGTNEMEIIRMGMDIRIKCTGCHHSVLIPRAKFEKNMKKVL 60
          ME K +GL DIV MKK HPCGTN+ +IIRMG D+RIKC GC HSV+IPR +FEK MKKVL
Sbjct: 1  MEEKKYGLNDIVEMKKQHPCGTNKWKIIRMGADVRIKCEGCQHSVMIPRREFEKKMKKVL 60

Query: 61 RSAG 64
           SA 
Sbjct: 61 LSAS 64


>B1HPL5.1 B1HPL5_LYSSC Putative uncharacterized protein
          Length = 66

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 51/64 (79%)

Query: 1  MERKIFGLGDIVLMKKPHPCGTNEMEIIRMGMDIRIKCTGCHHSVLIPRAKFEKNMKKVL 60
          ME K +GL DIV MKK HPCGTN+ +IIRMG D+RIKC GC HSV+IPR +FEK MKKVL
Sbjct: 1  MEAKKYGLNDIVEMKKQHPCGTNKWKIIRMGADVRIKCEGCQHSVMIPRREFEKKMKKVL 60

Query: 61 RSAG 64
           SA 
Sbjct: 61 LSAN 64


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 395,157,149
Number of extensions: 11379546
Number of successful extensions: 18775
Number of sequences better than 1.0e-05: 361
Number of HSP's gapped: 18715
Number of HSP's successfully gapped: 361
Length of query: 69
Length of database: 3,060,696,203
Length adjustment: 41
Effective length of query: 28
Effective length of database: 2,674,434,588
Effective search space: 74884168464
Effective search space used: 74884168464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)