BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0009.p
         (97 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8R8.1 B3K8R8_9BACI Ribosomal protein S6                            175   1e-42
B1DC26.1 B1DC26_9BACL Ribosomal protein S6                            140   3e-32
Q2RM72.1 RS6_MOOTA 30S ribosomal protein S6                           114   4e-24
B1YG99.1 RS6_EXIS2 30S ribosomal protein S6                           112   1e-23
C0ZA47.1 RS6_BREBN 30S ribosomal protein S6                           112   1e-23

>B3K8R8.1 B3K8R8_9BACI Ribosomal protein S6
          Length = 94

 Score =  175 bits (444), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/94 (91%), Positives = 89/94 (94%)

Query: 4  MRKYEVMYIIRPDIEQEAVQAAVEKFQGIISNGGEITKHEVQGKRRLAYEIKKFRDGVYV 63
          MRKYEVMYIIRPDIEQEAVQAAV+KFQGIISNGGEITKH+V GKRRLAYEIKKFRDGVYV
Sbjct: 1  MRKYEVMYIIRPDIEQEAVQAAVDKFQGIISNGGEITKHDVMGKRRLAYEIKKFRDGVYV 60

Query: 64 LVNFTAEPAVVTELERIMKISDEVIRYLITNDVA 97
          LVNF A P VV ELER+MKISDEVIRYLITNDVA
Sbjct: 61 LVNFNATPEVVAELERLMKISDEVIRYLITNDVA 94


>B1DC26.1 B1DC26_9BACL Ribosomal protein S6
          Length = 94

 Score =  140 bits (353), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/94 (74%), Positives = 78/94 (82%)

Query: 4  MRKYEVMYIIRPDIEQEAVQAAVEKFQGIISNGGEITKHEVQGKRRLAYEIKKFRDGVYV 63
          MRKYEVMYIIRPD+EQE VQA V+KF GII+NGGE+TK +V GKRRLAYEI K RDG YV
Sbjct: 1  MRKYEVMYIIRPDVEQENVQAIVDKFSGIINNGGEVTKQDVIGKRRLAYEINKIRDGYYV 60

Query: 64 LVNFTAEPAVVTELERIMKISDEVIRYLITNDVA 97
          LV+F A   VV EL+RIMKI+DEVIR LI  DVA
Sbjct: 61 LVHFNATTEVVNELDRIMKITDEVIRSLIVRDVA 94


>Q2RM72.1 RS6_MOOTA 30S ribosomal protein S6
          Length = 98

 Score =  114 bits (284), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 73/91 (80%), Gaps = 1/91 (1%)

Query: 4  MRKYEVMYIIRPDIEQEAVQAAVEKFQGIISN-GGEITKHEVQGKRRLAYEIKKFRDGVY 62
          MR YEV+++IRPD+E EA  A VEKF  +I++ GG++T+ +  GK+R+AYE++K+R+G Y
Sbjct: 1  MRNYEVVFVIRPDLEAEATTAVVEKFTQLITDQGGQVTRVDQWGKKRMAYEVRKYREGYY 60

Query: 63 VLVNFTAEPAVVTELERIMKISDEVIRYLIT 93
          VLV F   PAV  ELER++KISD+VIRYLIT
Sbjct: 61 VLVEFKGTPAVAQELERVLKISDDVIRYLIT 91


>B1YG99.1 RS6_EXIS2 30S ribosomal protein S6
          Length = 95

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 71/93 (76%), Gaps = 1/93 (1%)

Query: 4  MRKYEVMYIIRPDIEQEAVQAAVEKFQGIIS-NGGEITKHEVQGKRRLAYEIKKFRDGVY 62
          MRKYEV+YIIRP++++EA +A VE+F  +++ NGG + K    GKRR AYEI   R+G Y
Sbjct: 1  MRKYEVLYIIRPEVDEEARKALVERFNKVLTDNGGTVEKTTEMGKRRFAYEINDMREGFY 60

Query: 63 VLVNFTAEPAVVTELERIMKISDEVIRYLITND 95
          VL+N TAEPA   EL+R+MKISD+++R +IT D
Sbjct: 61 VLLNVTAEPAATKELDRLMKISDDIVRLMITKD 93


>C0ZA47.1 RS6_BREBN 30S ribosomal protein S6
          Length = 95

 Score =  112 bits (279), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 72/93 (77%), Gaps = 1/93 (1%)

Query: 4  MRKYEVMYIIRPDIEQEAVQAAVEKFQGIISN-GGEITKHEVQGKRRLAYEIKKFRDGVY 62
          MR+YEVMY++RPD+E+E V++ V ++  +++N GGEI+K +  GKRRLAYEI KFR+G Y
Sbjct: 1  MRQYEVMYVLRPDLEEEKVKSNVARYSDVVTNYGGEISKLQEMGKRRLAYEINKFREGYY 60

Query: 63 VLVNFTAEPAVVTELERIMKISDEVIRYLITND 95
          VL+NF A    V E ER+MKI+D+VIR++   D
Sbjct: 61 VLMNFKANSDAVAEAERLMKINDDVIRFMFVRD 93


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.138    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 514,539,644
Number of extensions: 17740546
Number of successful extensions: 55822
Number of sequences better than 1.0e-05: 1379
Number of HSP's gapped: 54976
Number of HSP's successfully gapped: 1379
Length of query: 97
Length of database: 3,060,696,203
Length adjustment: 66
Effective length of query: 31
Effective length of database: 2,438,909,213
Effective search space: 75606185603
Effective search space used: 75606185603
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)