BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0008.p (166 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8R7.1 B3K8R7_9BACI Single-stranded DNA-binding protein 229 6e-59 B1DC27.1 B1DC27_9BACL Single-stranded DNA-binding protein 219 5e-56 C1PE57.1 C1PE57_BACCO Single-strand binding protein 182 7e-45 A4ITV9.1 A4ITV9_GEOTN Single-stranded DNA-binding protein 180 3e-44 Q725B9.1 Q725B9_LISMF Single-stranded DNA-binding protein 171 2e-41 >B3K8R7.1 B3K8R7_9BACI Single-stranded DNA-binding protein Length = 164 Score = 229 bits (584), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 122/168 (72%), Positives = 129/168 (76%), Gaps = 6/168 (3%) Query: 1 LLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAET 60 +LNR+ILIGRLT+DPELRYTP+GVAVTQFTLAVDR FTGQ GEREADFIPVVTWRQLAET Sbjct: 1 MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTGQGGEREADFIPVVTWRQLAET 60 Query: 61 CANYLRKGRLTAVEGRIQVRNYENNEGKRVYVTEVIADNVRFLESSQNREGGNAPSSGNV 120 CANYLRKGRLTAVEGRIQVRNYENNEGKRVYVTEVIADNVRFLES++ GG GN Sbjct: 61 CANYLRKGRLTAVEGRIQVRNYENNEGKRVYVTEVIADNVRFLESNRETSGG----GGNR 116 Query: 121 PE--EPSYXXXXXXXXXXXXXXXXXXXXQDPFSGDGKPIDISDDDLPF 166 E QDPFS +GKPIDISDDDLPF Sbjct: 117 EESSFNGGSNGNSGGGNRGNNNYSRNNNQDPFSDEGKPIDISDDDLPF 164 >B1DC27.1 B1DC27_9BACL Single-stranded DNA-binding protein Length = 176 Score = 219 bits (559), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 121/178 (67%), Positives = 128/178 (71%), Gaps = 14/178 (7%) Query: 1 LLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAET 60 +LNR+ILIGRLTRDPELRYTPAGVAVTQFT+AVDR FT GEREADFIPVVTWRQLAET Sbjct: 1 MLNRVILIGRLTRDPELRYTPAGVAVTQFTIAVDRPFTSGQGEREADFIPVVTWRQLAET 60 Query: 61 CANYLRKGRLTAVEGRIQVRNYENNEGKRVYVTEVIADNVRFLESSQNREGGNAPSSGNV 120 CANYLRKGRLTAVEGRIQVRNYENNEGKRVYVTEVIADNVRFLES NREGG SG Sbjct: 61 CANYLRKGRLTAVEGRIQVRNYENNEGKRVYVTEVIADNVRFLES--NREGGAPQESGGY 118 Query: 121 PEEPSYXXXXXXXXXXXX------------XXXXXXXXQDPFSGDGKPIDISDDDLPF 166 + +DPFS DG+PIDIS+DDLPF Sbjct: 119 AGGNNSGGGSFGGGGGNAPYGGGNGGGGKPSTPRNNNSRDPFSDDGRPIDISEDDLPF 176 >C1PE57.1 C1PE57_BACCO Single-strand binding protein Length = 164 Score = 182 bits (463), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 94/167 (56%), Positives = 116/167 (69%), Gaps = 4/167 (2%) Query: 1 LLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAET 60 +LNR++L+GRLT+DP+LRYTP+GVAV FTLAV+R FT Q GEREADFI V WR+ AE Sbjct: 1 MLNRVVLVGRLTKDPDLRYTPSGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKQAEN 60 Query: 61 CANYLRKGRLTAVEGRIQVRNYENNEGKRVYVTEVIADNVRFLE-SSQNREGGNAPSSGN 119 ANYL+KG L V+GRIQ RNYE +G+RVYVTEV+AD+V+FLE S N+E G++ + GN Sbjct: 61 VANYLKKGSLAGVDGRIQTRNYEAQDGRRVYVTEVVADSVQFLEPRSANQERGSSQNYGN 120 Query: 120 VPEEPSYXXXXXXXXXXXXXXXXXXXXQDPFSGDGKPIDISDDDLPF 166 +DPFS DG+PIDISDDDLPF Sbjct: 121 ---NQGSAFPGYNQNQNQYQRNDSKPDEDPFSNDGQPIDISDDDLPF 164 >A4ITV9.1 A4ITV9_GEOTN Single-stranded DNA-binding protein Length = 164 Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 92/166 (55%), Positives = 114/166 (68%), Gaps = 2/166 (1%) Query: 1 LLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAET 60 ++NR+IL+GRLTRDPELRYTP+GVAV FTLAV+R FT Q GEREADFI V WR+ AE Sbjct: 1 MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGEREADFIQCVVWRRQAEN 60 Query: 61 CANYLRKGRLTAVEGRIQVRNYENNEGKRVYVTEVIADNVRFLESSQNREGGNAPSSGNV 120 AN+L+KG L V+GR+Q R+YEN EG+RVYVTEV+ADNV+FLE + E A + G Sbjct: 61 VANFLKKGSLAGVDGRLQTRSYENQEGRRVYVTEVVADNVQFLEPKGSNEQRGAAAGGYY 120 Query: 121 PEEPSYXXXXXXXXXXXXXXXXXXXXQDPFSGDGKPIDISDDDLPF 166 + + +DPF+ DG+PIDISDDDLPF Sbjct: 121 GD--PFPFGQDQNHRYPNEKGIGRIDEDPFANDGQPIDISDDDLPF 164 >Q725B9.1 Q725B9_LISMF Single-stranded DNA-binding protein Length = 178 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/178 (50%), Positives = 112/178 (62%), Gaps = 12/178 (6%) Query: 1 LLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAET 60 ++NR++L+GRLT+DPELRYTPAGVAV FTLAV+R FT Q GEREADFI V WR+ AE Sbjct: 1 MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAEN 60 Query: 61 CANYLRKGRLTAVEGRIQVRNYENNEGKRVYVTEVIADNVRFLE------------SSQN 108 AN+L+KG + V+GR+Q RNYE N+GKRVYVTE++A++V+FLE S N Sbjct: 61 VANFLKKGSMAGVDGRVQTRNYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQSGN 120 Query: 109 REGGNAPSSGNVPEEPSYXXXXXXXXXXXXXXXXXXXXQDPFSGDGKPIDISDDDLPF 166 N + P+ DPF+ DGKPIDISDDDLPF Sbjct: 121 NNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNNDPFASDGKPIDISDDDLPF 178 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.137 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 946,397,650 Number of extensions: 34542178 Number of successful extensions: 66607 Number of sequences better than 1.0e-05: 2409 Number of HSP's gapped: 64720 Number of HSP's successfully gapped: 2419 Length of query: 166 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 41 Effective length of database: 1,883,069,328 Effective search space: 77205842448 Effective search space used: 77205842448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)