BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0006.p (665 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZGN1.1 C0ZGN1_BREBN MutS2 family protein 609 e-172 B3K6Y6.1 B3K6Y6_9BACI DNA mismatch repair protein MutS domain pr... 608 e-172 B1DLR4.1 B1DLR4_9BACL DNA mismatch repair protein MutS domain pr... 471 e-130 A8MK98.1 A8MK98_ALKOO DNA mismatch repair protein MutS domain pr... 456 e-126 Q2BAL1.1 Q2BAL1_9BACI DNA mismatch repair protein, MutS family p... 438 e-121 >C0ZGN1.1 C0ZGN1_BREBN MutS2 family protein Length = 673 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 316/678 (46%), Positives = 444/678 (65%), Gaps = 19/678 (2%) Query: 1 MNTDSQITLQYEEMKQDLGRYAVSYEGRKAVSGLAPMTYLPAVHRALDETAEAKELLEKG 60 MN + L+Y+++K+ + YA+SY G+K V + P+ V LDETAEAK +L+ G Sbjct: 1 MNEKALQRLEYDKIKEKVMEYALSYAGKKHVEQMMPIDSAKVVRSKLDETAEAKNILQNG 60 Query: 61 ASVPIPSLEGMEWLMSLLGTGYLYSEKDFMAVSVFLQSCSQLRKYMQAKEQSAPRIASYA 120 ASVPIP+LEGME ++SLLGTGY++ DF + +FL SCSQL KYM K Q APR+++YA Sbjct: 61 ASVPIPALEGMEKILSLLGTGYVFGVNDFTNLYLFLTSCSQLMKYMATKAQLAPRVSTYA 120 Query: 121 ASLVELSGVREEIERCIRLGTIDDHASKGLERVRKRLTVAKDRLQRKIEAVMAKHQGILQ 180 AS+ + + +R EIE+CIR G + D ASK L +VRKR+ V ++RL+R++++++ K++ I+Q Sbjct: 121 ASMYDATKLRNEIEQCIRHGQVVDSASKDLLKVRKRIVVFEERLKRQLDSIVNKYRSIMQ 180 Query: 181 ENLVSMRGGRYVIPVKREYHKQVKGAVLDQSTSGQTVFVEPYEIXXXXXXXXXXXXXXXX 240 EN++S R GRYVIP+K+E+ KQV G+VLD+S SGQTV++EP EI Sbjct: 181 ENVISTRNGRYVIPIKKEHRKQVAGSVLDESASGQTVYMEPTEISTVQFELTALKAEEER 240 Query: 241 XXXXILSMLTGLLEQEQAALRLNIEITGNYDFIFAKAKYARTMGARSVALNDRGYLRMNG 300 +L L+ E+ L +N+E G YDF+FAKAKYA +G +V LN++G L + Sbjct: 241 EVTKVLMQLSAFAEEYTHELTVNVETVGMYDFLFAKAKYALAIGGANVELNEKGILDVKE 300 Query: 301 GRHPKL-EGMIPISLEFGNGYKSLIVTGPNXXXXXXXXXXXXXXXXMVQSGLLVPVEEGS 359 RHP L M+P+ ++ G YKSLI+TGPN MVQSGLLVPV+EGS Sbjct: 301 ARHPLLGPKMVPLHMKIGREYKSLIITGPNTGGKTLTLKTIGLLTMMVQSGLLVPVQEGS 360 Query: 360 DFTVFTDVISVIGDGQSLTQSLSTFSAQMRSIEGMLRDAGRGVLLLIDELAAGTDPGEGF 419 F++F ++ IGDGQS+ Q+LSTFSA + ++ +L+ L+LIDE+A GTDPGEG Sbjct: 361 HFSIFRNIAVDIGDGQSIEQALSTFSAHIHNVLEILKITDASTLVLIDEMATGTDPGEGV 420 Query: 420 ALSIAILEELNRKGANIIVTTHFNELKVFAASTSGFQNARMEFDKDTLQPLYRLTIGEAG 479 ALSIAILEEL+R+GA +IV THFNE+K FA++T+GFQNARMEFD++TLQPLYRL IGEAG Sbjct: 421 ALSIAILEELHRRGATVIVNTHFNEIKNFASATAGFQNARMEFDEETLQPLYRLRIGEAG 480 Query: 480 ESYALQIAEKLGIPETVIRRSQQLVEQQREMDGDRSHWNSLNRTGHHRPGER-AKQEMQR 538 +SYA IA KLGIP +I+RS+++ +G + +L R ++ E+ A + Sbjct: 481 QSYAFLIALKLGIPSEMIQRSREITR-----NGFMTTTTTLERLEPYQDVEQEADEASSY 535 Query: 539 TERHPTEAAGPVKXXXXXXX----------XXXXXGDGKAPKKD--FEIGDAVYVNPLDR 586 E E + V+ PK+D F +GD V+++ L R Sbjct: 536 VETRVIEKSEEVEVEVEVEEERREELPREISEEAVVTSATPKRDKPFAVGDCVFISYLGR 595 Query: 587 MGIVYETRDAVGMVGVMVQKQKMRFNHKRLKPYLSKEELYPEEYDFDIIFESKETRKKRK 646 +GIV+ D+ G+VGVM+Q QK + N KRL ++ +ELYP +YD DI+FE+KE RKKRK Sbjct: 596 IGIVFSAEDSKGIVGVMIQNQKYKINKKRLVLHIEGKELYPADYDMDIVFETKENRKKRK 655 Query: 647 LMRKRHVEGLSIIHEEEE 664 +M ++HVEGL+I + EE Sbjct: 656 MMSRKHVEGLAIETKREE 673 >B3K6Y6.1 B3K6Y6_9BACI DNA mismatch repair protein MutS domain protein Length = 653 Score = 608 bits (1569), Expect = e-172, Method: Compositional matrix adjust. Identities = 315/656 (48%), Positives = 435/656 (66%), Gaps = 22/656 (3%) Query: 9 LQYEEMKQDLGRYAVSYEGRKAVSGLAPMTYLPAVHRALDETAEAKELLEKGASVPIPSL 68 L+YE+++ +L R+AVSY G + + P+T + A+ L+ET EAK LL+ GASVPIPSL Sbjct: 9 LEYEKIRTELERFAVSYLGISHIQKMTPLTQMKAIRNKLNETEEAKTLLQSGASVPIPSL 68 Query: 69 EGMEWLMSLLGTGYLYSEKDFMAVSVFLQSCSQLRKYMQAKEQSAPRIASYAASLVELSG 128 EG+E ++ LLGTGY+ SE+DF + +L+SC QL +YM AK AP I+SYA+S+ EL Sbjct: 69 EGVELILDLLGTGYVLSERDFGHLVQYLRSCRQLIQYMAAKSSIAPTISSYASSMHELRP 128 Query: 129 VREEIERCIRLGTIDDHASKGLERVRKRLTVAKDRLQRKIEAVMAKHQGILQENLVSMRG 188 + EIER I G + D ASK L ++RK++ V ++R++RK++++M++++GI+QE++VS RG Sbjct: 129 LLSEIERSIHAGRVVDGASKDLAKIRKKIIVTEERIKRKLDSLMSRYKGIMQEHVVSKRG 188 Query: 189 GRYVIPVKREYHKQVKGAVLDQSTSGQTVFVEPYEIXXXXXXXXXXXXXXXXXXXXILSM 248 GRYV+P+K+E+ K V G+++D+S SGQTVF+EP ++ +LS Sbjct: 189 GRYVLPIKKEHRKAVSGSIMDESASGQTVFIEPADMQGLQMELNHLQADEVREETKVLSD 248 Query: 249 LTGLLEQEQAALRLNIEITGNYDFIFAKAKYARTMGARSVALNDRGYLRMNGGRHPKL-E 307 LT L+EQ Q LR N + G YD+I A+ KYA ++G R+V LN G++ + HP + Sbjct: 249 LTALVEQYQYELRTNADTVGIYDYIIARGKYAISIGGRNVDLNQEGFIHLKSAVHPLIGS 308 Query: 308 GMIPISLEFGNGYKSLIVTGPNXXXXXXXXXXXXXXXXMVQSGLLVPVEEGSDFTVFTDV 367 M+P+ G YK+LI+TGPN MVQSGLLVPV EGS VF +V Sbjct: 309 SMVPLDFTIGKRYKTLIITGPNTGGKTSALKTVGLITIMVQSGLLVPVAEGSHCAVFDEV 368 Query: 368 ISVIGDGQSLTQSLSTFSAQMRSIEGMLRDAGRGVLLLIDELAAGTDPGEGFALSIAILE 427 IGDGQSL +LSTFSA +R+I +L+ AGR L+L+DE+A+GTDPGEG LSIAILE Sbjct: 369 SVDIGDGQSLEHALSTFSAHIRNIRDILQTAGRSTLVLLDEMASGTDPGEGVGLSIAILE 428 Query: 428 ELNRKGANIIVTTHFNELKVFAASTSGFQNARMEFDKDTLQPLYRLTIGEAGESYALQIA 487 EL ++ A ++VTTHF E+K FA T+GF+NARMEFD DTL+PLYRL IGEAG SYA IA Sbjct: 429 ELFQRQATVVVTTHFTEIKNFADRTAGFENARMEFDADTLEPLYRLRIGEAGHSYAFVIA 488 Query: 488 EKLGIPETVIRRSQQLVEQQREMD-GDRSHWNSLN---RTGHHRPGERAKQEMQRTERHP 543 KLGIPE +I RS+++ E SH +S + R G PGE + P Sbjct: 489 AKLGIPEAIIARSREITEAGTTRGIAAYSHKDSSDTEERAGEPTPGE--------YDSFP 540 Query: 544 TEAAGPVKXXXXXXXXXXXXGDGKAPKKD-FEIGDAVYVNPLDRMGIVYETRDAVGMVGV 602 E GP + + +AP +++GD VYV L R G VYET DA G +GV Sbjct: 541 IE--GPDQPLDDKNK------EDEAPASSLYQLGDRVYVPYLKRSGTVYETMDARGHIGV 592 Query: 603 MVQKQKMRFNHKRLKPYLSKEELYPEEYDFDIIFESKETRKKRKLMRKRHVEGLSI 658 M+Q+++++ NHKRLKPY++ ++LYPE+YD DI+FESKE RKKR LM+++HVEGL I Sbjct: 593 MIQQERLKINHKRLKPYIAAKDLYPEDYDLDIVFESKENRKKRNLMKRKHVEGLQI 648 >B1DLR4.1 B1DLR4_9BACL DNA mismatch repair protein MutS domain protein Length = 651 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 269/662 (40%), Positives = 390/662 (58%), Gaps = 40/662 (6%) Query: 9 LQYEEMKQDLGRYAVSYEGRKAVSGLAPMTYLPAVHRALDETAEAKELLEKGASVPIPSL 68 L+Y+++K + Y VS GR P T + L+ET EA LL GASVP+ ++ Sbjct: 9 LEYDKLKDKMIGYTVSPAGRLLAERHVPSTNPKQIRAWLNETEEAAALLASGASVPLSAM 68 Query: 69 EGMEWLMSLLGTGYLYSEKDFMAVSVFLQSCSQLRKYMQAKEQSAPRIASYAASLVELSG 128 +G++ ++LLG G +Y+E + + +L S Q+++YM K AP IA YA S+ + Sbjct: 69 DGIDPFLALLGKGRIYTETELDQLLAWLVSIGQMKRYMNNKRMIAPTIAGYADSMNDCPN 128 Query: 129 VREEIERCIRLGTIDDHASKGLERVRKRLTVAKDRLQRKIEAVMAKHQGILQENLVSMRG 188 +R+E++RCIR G + D AS L +R+ L V +DR+ +K+EA ++K++ LQ+ ++S R Sbjct: 129 LRQELDRCIRYGRLTDQASPDLGTIRRHLIVIEDRIHKKLEASLSKYKSALQDPIISKRR 188 Query: 189 GRYVIPVKREYHKQVKGAVLDQSTSGQTVFVEPYEIXXXXXXXXXXXXXXXXXXXXILSM 248 GR VI VKRE+ K V G V D+S SGQT+F+EP ++ ILS Sbjct: 189 GRSVISVKREHRKLVPGTVWDESASGQTLFIEPIDVAELQQEWQEWSAEEERERTIILSG 248 Query: 249 LTGLLEQEQAALRLNIEITGNYDFIFAKAKYARTMGARSVALNDRGYLRMNGGRHPKLEG 308 L+ EQ + L N E ++DF+ A+ K + + + V L++ +++ RHP L G Sbjct: 249 LSEEAEQYKYELLQNREAMASFDFMLARGKLSLSYDGQPVTLSEEPIIKLVEARHPLLGG 308 Query: 309 MI-PISLEFGNGYKSLIVTGPNXXXXXXXXXXXXXXXXMVQSGLLVPVEEGSDFTVFTDV 367 PI++E G +K LI+TGPN +VQSGLLVP S F VF + Sbjct: 309 HAEPINVELGIRWKQLIITGPNTGGKTVALKTIGLLTLLVQSGLLVPASPQSRFGVFRHI 368 Query: 368 ISVIGDGQSLTQSLSTFSAQMRSIEGMLRDAGRGVLLLIDELAAGTDPGEGFALSIAILE 427 ++ +GDGQSL QSLSTFS+ + ++ MLR A ++L+DELAAGTDPGEG ALSIA+LE Sbjct: 369 MADVGDGQSLEQSLSTFSSHIAVLKEMLRSADERTIILLDELAAGTDPGEGIALSIAVLE 428 Query: 428 ELNRKGANIIVTTHFNELKVFAASTSGFQNARMEFDKDTLQPLYRLTIGEAGESYALQIA 487 EL ++GA TTHFNE+K FA+ T G NARM FD +TL+PLYRL IGEAGES+A IA Sbjct: 429 ELLKRGALTGATTHFNEIKKFASRTRGCMNARMAFDSETLRPLYRLEIGEAGESHAFAIA 488 Query: 488 EKLGIPETVIRRSQQLVEQQREMDGDRSHWNSLNRTGHHRPGERAKQE----------MQ 537 + G+P V++R+++L E + ++ D P E Q+ + Sbjct: 489 RRFGLPGHVMQRAEKLAEGRVKIQLD-------------EPAEEESQDEEKLFIEQSALP 535 Query: 538 RTERHPTEAAGPVKXXXXXXXXXXXXGDGKAPKKDFEIGDAVYVNPLDRMGIVYETRDAV 597 + P E + P + K+P + GDAV++ PL R GIV+E D Sbjct: 536 KQTEQPDETSNPKE---------------KSPAPAYAQGDAVWIYPLKRAGIVFEPADER 580 Query: 598 GMVGVMVQKQKMRFNHKRLKPYLSKEELYP-EEYDFDIIFESKETRKKRKLMRKRHVEGL 656 G V V VQ +KM FN KR+KPY+++E+LYP +YD DI+F++KE RKKRKLM +++VEGL Sbjct: 581 GEVIVQVQGKKMSFNRKRIKPYINREKLYPGADYDMDIVFDTKENRKKRKLMGRKYVEGL 640 Query: 657 SI 658 +I Sbjct: 641 TI 642 >A8MK98.1 A8MK98_ALKOO DNA mismatch repair protein MutS domain protein Length = 645 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 243/662 (36%), Positives = 393/662 (59%), Gaps = 23/662 (3%) Query: 1 MNTDSQITLQYEEMKQDLGRYAVSYEGRKAVSGLAPMTYLPAVHRALDETAEAKELLEKG 60 MN + L+Y+++K+ L YA+S ++ + L P+ ++ A+ ET EA+ ++ Sbjct: 1 MNHKTIELLEYDKIKEALKGYALSNMAKERIEKLEPLLEKSSIEIAMKETTEARSIVNIS 60 Query: 61 ASVPIPSLEGMEWLMSLLGTGYLYSEKDFMAVSVFLQSCSQLRKYMQAKEQSAPRIASYA 120 +S+PI SL G++ + + S D V+ L+ +L+ +M+ K AP I+ YA Sbjct: 61 SSIPINSLAGVDNVRDKFSKSIILSPADLEMVAGLLKEIKRLKNFMRDKNYVAPTISLYA 120 Query: 121 ASLVELSGVREEIERCIRLGTIDDHASKGLERVRKRLTVAKDRLQRKIEAVMA--KHQGI 178 S EL VREEIE+ I G++ D AS L ++RK + + + +++ K+E + +++ Sbjct: 121 LSSYELDDVREEIEKAIVRGSVADRASSKLFKIRKDIAILEGKIKAKLENFLKDDRYKSY 180 Query: 179 LQENLVSMRGGRYVIPVKREYHKQVKGAVLDQSTSGQTVFVEPYEIXXXXXXXXXXXXXX 238 +Q++L+S + RYVIP+K E+ KQV+G++ D+S SG TVF+EP ++ Sbjct: 181 IQDSLISQKNSRYVIPIKSEHRKQVEGSIHDRSQSGSTVFIEPADVKKMQDKLENHIFEE 240 Query: 239 XXXXXXILSMLTGLLEQEQAALRLNIEITGNYDFIFAKAKYARTMGARSVALNDRGYLRM 298 ILS LT L+ + + + +NIE+ NYDFIFAK +Y+++M RSV+ N+ Y+ + Sbjct: 241 EKEVYRILSALTALVCEREKEINVNIEVMSNYDFIFAKGRYSKSMDGRSVSFNNENYIHL 300 Query: 299 NGGRHPKL-EGMIPISLEFGNGYKSLIVTGPNXXXXXXXXXXXXXXXXMVQSGLLVPVEE 357 G +HP + + +P++ E G YK LI+TGPN M Q+GL VPVEE Sbjct: 301 KGAKHPFIGKDAVPLNFEIGKNYKGLIITGPNTGGKTVTLKTVGLLTMMAQTGLHVPVEE 360 Query: 358 GSDFTVFTDVISVIGDGQSLTQSLSTFSAQMRSIEGMLRDAGRGVLLLIDELAAGTDPGE 417 GS+ +F V+ IGDGQS+ QSLSTFS+ +++I +L DA L+++DEL AGTDPGE Sbjct: 361 GSEIAIFNKVLVDIGDGQSIQQSLSTFSSHIKNIIHILEDADSKTLVILDELGAGTDPGE 420 Query: 418 GFALSIAILEELNRKGANIIVTTHFNELKVFAASTSGFQNARMEFDKDTLQPLYRLTIGE 477 G +++A+LE L K + I TTH++E+K FA + GF N M FD +TL+PLY+L IG+ Sbjct: 421 GMGIAVAVLEALYHKESTICATTHYSEIKEFAQNHEGFINGSMAFDINTLKPLYKLYIGK 480 Query: 478 AGESYALQIAEKLGIPETVIRRSQQLVEQQREMDGDRSHWNSLNRTGHHRPGERAKQEMQ 537 GES A IA +LG+ +I R+ ++ + ++ D S + ++ T + + +++ + Sbjct: 481 PGESNAFLIALRLGMDGGLIERAHEVTYKDKK---DYSKY-AVQYTVNTQEKLNVQKDSE 536 Query: 538 RTERHPTEAAGPVKXXXXXXXXXXXXGDGKAPKKD-FEIGDAVYVNPLDRMGIVYETRDA 596 + E A G KA +K+ F+IGD V+++ ++R GI+ E + Sbjct: 537 KKEHKKVVA---------------DRGASKAKRKEVFQIGDCVFISFMNRTGIICEGENG 581 Query: 597 VGMVGVMVQKQKMRFNHKRLKPYLSKEELYPEEYDFDIIFESKETRKKRKLMRKRHVEGL 656 G GVMV ++K++ N KRL Y+ K+ELYPE+YDFDI+ ++K+ RKK KL+ K +G+ Sbjct: 582 KGEYGVMVMQKKIKINQKRLSLYIEKKELYPEDYDFDIVLKTKDHRKKDKLINKGQGKGI 641 Query: 657 SI 658 SI Sbjct: 642 SI 643 >Q2BAL1.1 Q2BAL1_9BACI DNA mismatch repair protein, MutS family protein Length = 642 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 258/664 (38%), Positives = 381/664 (57%), Gaps = 34/664 (5%) Query: 1 MNTDSQITLQYEEMKQDLGRYAVSYEGRKAVSGLAPMTYLPAVHRALDETAEAKELLEKG 60 MN+ + +L + +K++ ++A++ GRK + + P + DETAEA +L+ G Sbjct: 1 MNSHTYESLDFHVVKENAAQFALTEGGRKKILSMEPSFLKGQIEALADETAEAAAILKTG 60 Query: 61 ASVPIPSLEGMEWLMSLLGTGYLYSEKDFMAVSVFLQSCSQLRKYMQAKEQSAPRIASYA 120 +SVPI S++G+E L+S G + + + FLQSC +L+KYM+ K APRI+SY Sbjct: 61 SSVPIGSMKGVEALLSSFHKGIVLRVEQLSRLYEFLQSCKKLKKYMKDKSNLAPRISSYI 120 Query: 121 ASLVELSGVREEIERCIRLGTIDDHASKGLERVRKRLTVAKDRLQRKIEAVM--AKHQGI 178 S+ +L + EE+ RCIR G IDDHASK L ++RK++ + ++RL+ K+ ++ AK++ + Sbjct: 121 LSVDDLPFLAEELMRCIRNGGIDDHASKDLLKIRKQIAIQEERLKEKLNQILKSAKYKEV 180 Query: 179 LQENLVSMRGGRYVIPVKREYHKQVKGAVLDQSTSGQTVFVEPYEIXXXXXXXXXXXXXX 238 LQE +VS R GRYV+PVK+EY ++KG+VLD+S SG T+F+EP EI Sbjct: 181 LQEGVVSQRNGRYVVPVKKEYRYKIKGSVLDRSASGSTLFIEPEEIGAHQDQLNWLHSDE 240 Query: 239 XXXXXXILSMLTGLLEQEQAALRLNIEITGNYDFIFAKAKYARTMGARSVALNDRGYLRM 298 IL LTGL E + ++L E +YD +FAK KY + V D R+ Sbjct: 241 ESEILNILLYLTGLAEDKHEEIKLAAETMIHYDIVFAKGKYGLAIEGIPVCFQDDQSFRL 300 Query: 299 NGGRHPKL-EGMIPISLEFG-NGYKSLIVTGPNXXXXXXXXXXXXXXXXMVQSGLLVPVE 356 RHP L +P+++E G +G +L++TGPN M Q GLL+PV Sbjct: 301 LDARHPSLGSSAVPLTIELGQSGTTALVITGPNTGGKTVAIKTVGLLVLMAQCGLLLPVS 360 Query: 357 EGSDFTVFTDVISVIGDGQSLTQSLSTFSAQMRSIEGMLRDAGRGVLLLIDELAAGTDPG 416 +GS +F ++ IGDGQS+ ++LSTFS+++++I +L ++ L+L+DEL +GTDPG Sbjct: 361 QGSSMGIFQKILVDIGDGQSIEENLSTFSSRIKNIGEILEESTADSLVLLDELGSGTDPG 420 Query: 417 EGFALSIAILEELNRKGANIIVTTHFNELKVFAASTSGFQNARMEFDKDTLQPLYRLTIG 476 EG L+ AILE+L+RKGA I+ TTH+ E+K FA GF N MEFD TL+P YRL IG Sbjct: 421 EGMGLAAAILEQLHRKGAAILATTHYKEIKSFAEHHEGFINGSMEFDLATLKPTYRLKIG 480 Query: 477 EAGESYALQIAEKLGIPETVIRRSQQLVEQQREMDGDRSHWNSLNRTGHHRPGERAKQEM 536 E+GES A IA KLGI +I R+ ++S+ L+ + AK++M Sbjct: 481 ESGESQAFAIALKLGIHPKLIERAHYY-----SYGIEKSYPQELS-------DDTAKKKM 528 Query: 537 QR---TERHPTEAAGPVKXXXXXXXXXXXXGDGKAPKKDFEIGDAVYVNPLDRMGIVYET 593 +R ++H + K F+ GD V +GI+Y+ Sbjct: 529 ERQIFVQKHEKKREKTAKIEKPAA---------------FKTGDNVLYTSTGELGIIYKG 573 Query: 594 RDAVGMVGVMVQKQKMRFNHKRLKPYLSKEELYPEEYDFDIIFESKETRKKRKLMRKRHV 653 D+ V ++ +K N KRLK Y+ EELYPEEYDF IIF++KE RK K M K+HV Sbjct: 574 PDSRDQYIVQIKGEKKEINSKRLKLYIKAEELYPEEYDFSIIFDTKENRKVLKQMGKKHV 633 Query: 654 EGLS 657 +GLS Sbjct: 634 KGLS 637 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,497,809,704 Number of extensions: 138691529 Number of successful extensions: 389622 Number of sequences better than 1.0e-05: 3011 Number of HSP's gapped: 384768 Number of HSP's successfully gapped: 3040 Length of query: 665 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 522 Effective length of database: 1,713,491,058 Effective search space: 894442332276 Effective search space used: 894442332276 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)