BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0005.p (578 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B901.1 Q2B901_9BACI Probable oligopeptide ABC transporter, oli... 543 e-152 A8W2P3.1 A8W2P3_9BACI Phosphoesterase, RecJ domain protein 436 e-120 A9VET6.1 A9VET6_BACWK Extracellular solute-binding protein family 5 419 e-115 C2PAD9.1 C2PAD9_BACCE Oligopeptide ABC transporter, oligopeptide... 419 e-115 C2QNE4.1 C2QNE4_BACCE Oligopeptide ABC transporter, oligopeptide... 417 e-114 >Q2B901.1 Q2B901_9BACI Probable oligopeptide ABC transporter, oligopeptide-binding protein Length = 577 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 269/552 (48%), Positives = 375/552 (67%), Gaps = 7/552 (1%) Query: 16 LVLAMALMLSACSGI--GSERLSYGVLSNKEAEVPAA-GGTVTYGYSSPFQGLFEPAFYE 72 ++L M++ L+ACSG S + K+AE GG VT+GY+ F+G+ A+YE Sbjct: 11 VLLVMSMFLAACSGNENTSGEDTGKKDDGKDAETTEVEGGKVTFGYTQAFKGVLSYAYYE 70 Query: 73 GEDDYQVLEFITEAMFRVKDDLTTVPGIASWQESDDHTVFTFRIRPGVRWHNGDELTVED 132 GEDD L+F+ E M D+L +P +A W ++D+TV TF+++ GV+WH+G+ LT ED Sbjct: 71 GEDDANALQFMHEGMVAYNDELQPIPNLAEWTFNEDNTVVTFKLKDGVKWHDGEPLTAED 130 Query: 133 WKFALETIASPEYTGSRYYSVEMISGAEAFHKGKAKEISGIKVIDPYTLRITMNSVRVNA 192 ++A IA P Y G+R+ +V MI GA+ + GKA I GIKVID T+ +T+ VN Sbjct: 131 MEYAWYLIADPTYEGARFANVAMIKGAQEYKDGKADTIEGIKVIDDLTVEVTVTEPSVNL 190 Query: 193 LDNLWPYPMNKRVYSGIAVKDMPDSDPVRKHPIGIGPFEVTNIQPGQLVEMKAFEDYYQG 252 +DN+W P K Y I+ K++PDSD VRK+PIG+GPF+VTNI PG+++E + +DY++G Sbjct: 191 IDNIWSIPEPKHYYGDISSKELPDSDQVRKNPIGVGPFKVTNIVPGEMIEYERNDDYWRG 250 Query: 253 KPLLDGVTYKVFDDKDIVNLLDENVIDMATAPRDAYASLKQLDQVNILQSPELSYEYIGF 312 LDGV YK+ D L++ +D+ AP D + +K+L +N + +SY YIG Sbjct: 251 PAKLDGVVYKIIDPSLAAGLIENGEVDVIQAPSDQWGQIKELGNINPVTIDAMSYSYIGI 310 Query: 313 KFGSWDHESQKIVMDNPKFADKRLRQAMYYALDREGIINQYSYGLGSLIETPVPSSSWAK 372 G +D +S K+VMDNPKF+DKR+RQA+ YALDR+ I+ ++ GLG + P PS SWAK Sbjct: 311 DQGRYDAKSGKVVMDNPKFSDKRVRQALVYALDRQAYIDAFTNGLGKPLNVPFPSVSWAK 370 Query: 373 IPDSEINTYPYSPERAKALLNEAGYVDRDGDGLREDPKGAPFVIHYDAMTGSTTAEARTR 432 I DSEINTY Y PE+AK+LL+EAGY D DGDG REDP G PF I++DAM + T+EAR + Sbjct: 371 IDDSEINTYDYDPEKAKSLLDEAGYKDVDGDGFREDPDGKPFSINFDAMASAETSEARAQ 430 Query: 433 AILQNWRDVGLDVRLNGGQLKDLNTFYEAVENDDPSVELFNGVWGLASDPDPSGLWREID 492 ILQ+W +VG+ +LNGG LKD N FY+ +E DDPSVE F+G WGL+ DPDPSG+W D Sbjct: 431 FILQSWGEVGVKAQLNGGSLKDFNLFYDTIEADDPSVETFHGAWGLSYDPDPSGIWLSTD 490 Query: 493 LWNYPRFSSKRNEELIREGVGI---KSYDK-EHRKQVYYEWQKLVNEEVPMIFFAERINI 548 WN R+ ++ ++ LI++GV K+ D E+RK+VY EWQKLVNEE+P+IFF +R + Sbjct: 491 KWNMWRWLNEESDALIKKGVQFPEDKNQDVIEYRKEVYNEWQKLVNEELPVIFFDQREDA 550 Query: 549 TAVNKRLQNVKV 560 A+NKR+ VKV Sbjct: 551 WAINKRVGGVKV 562 >A8W2P3.1 A8W2P3_9BACI Phosphoesterase, RecJ domain protein Length = 596 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 223/532 (41%), Positives = 325/532 (61%), Gaps = 6/532 (1%) Query: 51 GGTVTYGYSSPFQGLFEPAFYEGEDDYQVLE-FITEAMFRVK--DDLTTVPGIA-SWQES 106 GGTVTYGY+SPF GL + A+YEG+DD L F EA+++V+ ++ P +A W+ S Sbjct: 65 GGTVTYGYTSPFAGLLDWAWYEGQDDSLALSLFNGEALYQVRSENEFELEPSLAREWEWS 124 Query: 107 DDHTVFTFRIRPGVRWHNGDELTVEDWKFALETIASPEYTGSRYYSVEMISGAEAFHKGK 166 DD+T TF + GV WH+G ELT ED+KF+ ETIA P+ +R +V+ I G + + G+ Sbjct: 125 DDNTTVTFHLEEGVMWHDGVELTAEDFKFSYETIAHPDGNTARQSNVDRIVGYDEYRAGE 184 Query: 167 AKEISGIKVIDPYTLRITMNSVRVNALDNLWPYPMNKRVYSGIAVKDMPDSDPVRKHPIG 226 E++G++VID YT + V+ N L NLW YPM+ + V +M D+D +R++P+G Sbjct: 185 TDELAGVEVIDDYTFSVEFKEVQANNLANLWSYPMSVNHLGHLEVSEMEDADEIRRNPVG 244 Query: 227 IGPFEVTNIQPGQLVEMKAFEDYYQGKPLLDGVTYKVFDDKDIVNLLDENVIDMATAPRD 286 +G F V N+ PG+++E AFEDY+QG P LDGV Y++ D + LL + +D+ Sbjct: 245 LGAFVVDNVVPGEMIEYSAFEDYWQGAPNLDGVVYRIVDGELSGELLAQGEVDVIELTGG 304 Query: 287 AYASLKQLDQVNILQSPELSYEYIGFKFGSWDHESQKIVMDNPKFADKRLRQAMYYALDR 346 L+ D+V + + LSY YIGFK G WD E VMDN KF K LR A +A+DR Sbjct: 305 QALPLQDDDRVYLEEIEALSYMYIGFKLGHWDDEEGTAVMDNEKFQSKELRHAFAHAIDR 364 Query: 347 EGIINQYSYGLGSLIETPVPSSSWAKIPDSEINTYPYSPERAKALLNEAGYVDRDGDGLR 406 +GII+ + G G++I P W+ +S +N Y + P+RA+ LL EAGY D GDG Sbjct: 365 QGIIDSFMEGYGTVINAPESVIRWSYPDESALNQYEHDPDRARELLEEAGYEDVTGDGFV 424 Query: 407 EDPKGAPFVIHYDAMTG-STTAEARTRAILQNWRDVGLDVRLNGGQLKDLNTFYEAVEND 465 EDP G F +++ AM + AE R + I+QN +DVG++ +L GQL D N FY+ VE D Sbjct: 425 EDPNGDEFTVNFAAMNAPADIAEPRAQYIIQNLQDVGINAQLMDGQLLDFNLFYDLVEED 484 Query: 466 DPSVELFNGVWGLAS-DPDPSGLWREIDLWNYPRFSSKRNEELIREGVGIKSYDKEHRKQ 524 D +++F G WGLA+ DPD SGLW D WN+ R+ ++ ++ELIR GV ++ D E+R+ Sbjct: 485 DSDIDIFMGAWGLATADPDLSGLWLSTDFWNFTRWVNEESDELIRAGVSEEALDFEYRQS 544 Query: 525 VYYEWQKLVNEEVPMIFFAERINITAVNKRLQNVKVNSMSNIIDPQTWWIQE 576 VY EW +L NEE+PMI + +NI + + + D W+ ++ Sbjct: 545 VYQEWHQLFNEELPMIPISSPVNIYGIAADVGGITAEVRDAAGDAHLWYREQ 596 >A9VET6.1 A9VET6_BACWK Extracellular solute-binding protein family 5 Length = 591 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 220/554 (39%), Positives = 336/554 (60%), Gaps = 18/554 (3%) Query: 21 ALMLSACSGIG-SERLSYG----------VLSNKEAEVPAAGGTVTYGYSS--PFQGLFE 67 L+LSAC G G SE+ S + N + E+ G++TYG S PF+GL Sbjct: 18 TLLLSACGGSGGSEKTSSTKKVDTNKFSTTVKNDKKEI--KDGSLTYGLVSNTPFEGLLN 75 Query: 68 PAFYEGEDDYQVLEFITEAMFRVKDDLT-TVPGIASWQESDDHTVFTFRIRPGVRWHNGD 126 A YEG+ D QVL E++ + T G A+++ S+D T +I+ V+WH+G+ Sbjct: 76 FAVYEGDPDNQVLTIFDESLLSNDKNWEYTNDGAATYELSEDKKTITLKIKDNVKWHDGN 135 Query: 127 ELTVEDWKFALETIASPEYTGSRYYS-VEMISGAEAFHKGKAKEISGIKVIDPYTLRITM 185 +T ED +++ I S Y GSRY S ++MI G E +H GK+++ISGIKV DP T+ IT Sbjct: 136 PVTAEDLEYSYLVIGSKLYAGSRYDSQMQMIEGMEDYHNGKSEKISGIKVTDPKTISITF 195 Query: 186 NSVRVNALDNLWPYPMNKRVYSGIAVKDMPDSDPVRKHPIGIGPFEVTNIQPGQLVEMKA 245 + LW YP++K+ + + + +SD +RK+PIG GPF+V I PG+ VE + Sbjct: 196 KEPNPSVKTGLWTYPLHKKYLGDVPIDKLAESDKIRKNPIGFGPFKVKKITPGESVEFER 255 Query: 246 FEDYYQGKPLLDGVTYKVFDDKDIVNLLDENVIDMATAPRDAYASLKQLDQVNILQSPEL 305 F+DYY GKP L + KV + + L ID+A D Y ++ QL +L +L Sbjct: 256 FDDYYGGKPKLKSMVLKVVNPSVVNASLKNGDIDIAEVSADQYPNVSQLKNAQLLGKTDL 315 Query: 306 SYEYIGFKFGSWDHESQKIVMDNPKFADKRLRQAMYYALDREGIINQYSYGLGSLIETPV 365 Y YIGFK G D E +++VMD KF D R+RQAM YA+DR+ I + +GL +P+ Sbjct: 316 YYSYIGFKLGHMDKEKEEVVMDKDKFKDVRVRQAMAYAIDRKEIGEKLYHGLRYPANSPI 375 Query: 366 PSSSWAKIPDSEINTYPYSPERAKALLNEAGYVDRDGDGLREDPKGAPFVIHYDAMTGST 425 P S K ++++ +Y E+AK LL+EAGY D +GDG REDP G F ++ +M+GS Sbjct: 376 PPS-LPKYHNNKVGSYDKDVEKAKKLLDEAGYKDTNGDGFREDPNGKEFKANFLSMSGSD 434 Query: 426 TAEARTRAILQNWRDVGLDVRLNGGQLKDLNTFYEAVENDDPSVELFNGVWGLASDPDPS 485 +E + +Q+W+D+GL V L G+L + N+FY+ ++ DDP V++F+G WG ASDPDPS Sbjct: 435 VSEPLAKFFIQSWKDIGLKVELLDGRLHEFNSFYDMIKKDDPKVDIFSGAWGTASDPDPS 494 Query: 486 GLWREIDLWNYPRFSSKRNEELIREGVGIKSYDKEHRKQVYYEWQKLVNEEVPMIFFAER 545 G+W + +NY R+S+ +N EL+++G+ + D+++RK VY +WQKL+++EVP+I + Sbjct: 495 GIWAKNASFNYTRWSNDKNNELLKQGISPAAADEKYRKDVYDKWQKLIHDEVPLIPLHYK 554 Query: 546 INITAVNKRLQNVK 559 ++ VN R+++ K Sbjct: 555 FDLKGVNNRVKDYK 568 >C2PAD9.1 C2PAD9_BACCE Oligopeptide ABC transporter, oligopeptide-binding protein Length = 594 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 218/554 (39%), Positives = 335/554 (60%), Gaps = 18/554 (3%) Query: 21 ALMLSACSGIG-SERLSY----------GVLSNKEAEVPAAGGTVTYGYSS--PFQGLFE 67 L+LSAC G G SE+ S + N + E+ G++TYG S PF+GL Sbjct: 21 TLLLSACGGSGGSEKTSSTKKVDTNKFSASVKNDKKEI--KDGSLTYGLVSNTPFEGLLN 78 Query: 68 PAFYEGEDDYQVLEFITEAMFRVKDDLT-TVPGIASWQESDDHTVFTFRIRPGVRWHNGD 126 A YEG+ D QV+ E++ ++ T G A+++ S D T +I+ V+WH+G+ Sbjct: 79 FAVYEGDPDNQVITIFDESLLSNDENWEYTNDGAATYEISKDKKTITLKIKDNVKWHDGN 138 Query: 127 ELTVEDWKFALETIASPEYTGSRY-YSVEMISGAEAFHKGKAKEISGIKVIDPYTLRITM 185 +T ED +++ I S +Y GSRY ++MI G E +H GKA++ISGIKV DP T+ IT Sbjct: 139 PVTAEDLEYSYLVIGSKQYAGSRYDTQMQMIEGMEDYHNGKAEKISGIKVTDPKTISITF 198 Query: 186 NSVRVNALDNLWPYPMNKRVYSGIAVKDMPDSDPVRKHPIGIGPFEVTNIQPGQLVEMKA 245 + LW YP++K+ + + + +SD +RK+PIG GPF+V I PG+ VE + Sbjct: 199 KEPNPSVKTGLWAYPLHKKYLGDVPIDKLAESDKIRKNPIGFGPFKVKKITPGESVEFER 258 Query: 246 FEDYYQGKPLLDGVTYKVFDDKDIVNLLDENVIDMATAPRDAYASLKQLDQVNILQSPEL 305 F+DYY GKP L + KV + + L ID+A D Y ++ +L ++ +L Sbjct: 259 FDDYYGGKPKLKSMVLKVVNPSVVNASLKNGDIDIAEVSADQYPNVSKLKNAQLVGKTDL 318 Query: 306 SYEYIGFKFGSWDHESQKIVMDNPKFADKRLRQAMYYALDREGIINQYSYGLGSLIETPV 365 Y YIGFK G D E +++VMD KF D R+RQAM YA+DR+ I + +GL +P+ Sbjct: 319 YYSYIGFKLGHMDKEKEEVVMDKEKFKDVRVRQAMAYAIDRKEIGEKLYHGLRYPANSPI 378 Query: 366 PSSSWAKIPDSEINTYPYSPERAKALLNEAGYVDRDGDGLREDPKGAPFVIHYDAMTGST 425 P S K ++++ Y E+AK LL+EAGY D +GDG REDP G F ++ +M+GS Sbjct: 379 PPS-LPKYHNNKVGAYDKDVEKAKKLLDEAGYKDTNGDGFREDPNGKEFKANFLSMSGSD 437 Query: 426 TAEARTRAILQNWRDVGLDVRLNGGQLKDLNTFYEAVENDDPSVELFNGVWGLASDPDPS 485 +E + +Q+W+D+GL V L G+L + N+FY+ ++ DDP V+LF WG ASDPDPS Sbjct: 438 VSEPLAKFFIQSWKDIGLKVELLDGRLHEFNSFYDMIKKDDPKVDLFAAAWGTASDPDPS 497 Query: 486 GLWREIDLWNYPRFSSKRNEELIREGVGIKSYDKEHRKQVYYEWQKLVNEEVPMIFFAER 545 G+W + +NYPR+++ +N EL+++G+ ++ D+++RK VY +WQKLV++EVP+I + Sbjct: 498 GIWAKNAAFNYPRWATDKNTELLKQGISKEAADEKYRKDVYDKWQKLVHDEVPLIPLHYK 557 Query: 546 INITAVNKRLQNVK 559 ++ VN R+++ K Sbjct: 558 FDLKGVNNRVKDYK 571 >C2QNE4.1 C2QNE4_BACCE Oligopeptide ABC transporter, oligopeptide-binding protein Length = 594 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 217/554 (39%), Positives = 335/554 (60%), Gaps = 18/554 (3%) Query: 21 ALMLSACSGIG-SERLSY----------GVLSNKEAEVPAAGGTVTYGYSS--PFQGLFE 67 L+LSAC G G SE+ S + N + E+ G++TYG S PF+GL Sbjct: 21 TLLLSACGGSGGSEKTSSTKKVDTNKFSASVKNDKKEI--KDGSLTYGLVSNTPFEGLLN 78 Query: 68 PAFYEGEDDYQVLEFITEAMFRVKDDLT-TVPGIASWQESDDHTVFTFRIRPGVRWHNGD 126 A YEG+ D QV+ E++ ++ T G A+++ S D T +I+ V+WH+G+ Sbjct: 79 FAVYEGDPDNQVITIFDESLLSNDENWEYTNDGAATYEISKDKKTITLKIKDNVKWHDGN 138 Query: 127 ELTVEDWKFALETIASPEYTGSRY-YSVEMISGAEAFHKGKAKEISGIKVIDPYTLRITM 185 +T ED +++ I S +Y GSRY ++MI G E +H GKA++ISGIKV DP T+ IT Sbjct: 139 PVTAEDLEYSYLVIGSKQYAGSRYDTQMQMIEGMEDYHNGKAEKISGIKVTDPKTISITF 198 Query: 186 NSVRVNALDNLWPYPMNKRVYSGIAVKDMPDSDPVRKHPIGIGPFEVTNIQPGQLVEMKA 245 + + LW YP++K+ + + + +SD +RK+PIG GPF+V I PG+ VE + Sbjct: 199 KTPNPSVKTGLWTYPLHKKYLGDVPIDKLAESDKIRKNPIGFGPFKVKKITPGEAVEFER 258 Query: 246 FEDYYQGKPLLDGVTYKVFDDKDIVNLLDENVIDMATAPRDAYASLKQLDQVNILQSPEL 305 F+DYY GKP L + KV + + L ID+A D Y ++ +L ++ +L Sbjct: 259 FDDYYGGKPKLKSMVLKVVNPSVVNASLKNGDIDIAEVSADQYPNVSKLKNAQLVGKTDL 318 Query: 306 SYEYIGFKFGSWDHESQKIVMDNPKFADKRLRQAMYYALDREGIINQYSYGLGSLIETPV 365 Y YIGFK G D E +++VMD KF D R+RQAM YA+DR+ I + +GL +P+ Sbjct: 319 YYSYIGFKLGHMDKEKEEVVMDKEKFKDVRVRQAMAYAIDRKEIGEKLYHGLRYPANSPI 378 Query: 366 PSSSWAKIPDSEINTYPYSPERAKALLNEAGYVDRDGDGLREDPKGAPFVIHYDAMTGST 425 P S K +++ +Y E+AK LL+EAGY D +GDG REDP G F ++ +M+GS Sbjct: 379 PPS-LPKYHNNKAGSYDKDVEKAKKLLDEAGYKDTNGDGFREDPNGKEFKANFLSMSGSD 437 Query: 426 TAEARTRAILQNWRDVGLDVRLNGGQLKDLNTFYEAVENDDPSVELFNGVWGLASDPDPS 485 +E + +Q+W+D+GL V L G+L + N+FY+ ++ DDP V+LF WG SDPDPS Sbjct: 438 VSEPLAKFFIQSWKDIGLKVELLDGRLHEFNSFYDMIKKDDPKVDLFAAAWGTGSDPDPS 497 Query: 486 GLWREIDLWNYPRFSSKRNEELIREGVGIKSYDKEHRKQVYYEWQKLVNEEVPMIFFAER 545 G+W + +NYPR+++ +N EL+++G+ ++ D+++RK VY +WQKLV++EVP+I + Sbjct: 498 GIWAKDAAFNYPRWATDKNTELLKQGISPEAADEKYRKDVYDKWQKLVHDEVPLIPLHYK 557 Query: 546 INITAVNKRLQNVK 559 ++ VN R+++ K Sbjct: 558 FDLKGVNNRVKDYK 571 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,758,380,405 Number of extensions: 169918284 Number of successful extensions: 394967 Number of sequences better than 1.0e-05: 5189 Number of HSP's gapped: 386849 Number of HSP's successfully gapped: 5211 Length of query: 578 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 437 Effective length of database: 1,732,333,088 Effective search space: 757029559456 Effective search space used: 757029559456 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)