BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0003.p (152 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8Q5.1 B3K8Q5_9BACI CBS domain containing protein 249 8e-65 B1DC35.1 B1DC35_9BACL CBS domain containing membrane protein 202 8e-51 B9DZU5.1 B9DZU5_CLOK1 Putative uncharacterized protein 168 2e-40 A5N6C5.1 A5N6C5_CLOK5 Putative uncharacterized protein 168 2e-40 Q97D09.1 Q97D09_CLOAB Two CBS domain containing protein 165 1e-39 >B3K8Q5.1 B3K8Q5_9BACI CBS domain containing protein Length = 144 Score = 249 bits (635), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 116/140 (82%), Positives = 130/140 (92%) Query: 12 MNIAFFLLPKQEVACVTLDSTLRQTLERMEFHRYTAVPILNRNGEYAGTVTEGDLLWYMK 71 MNIAFFLLPKQEV C+TLDSTLRQTLERMEFHRYTAVP+L++NG+YAGTVTEGDLLW+MK Sbjct: 1 MNIAFFLLPKQEVICLTLDSTLRQTLERMEFHRYTAVPVLDKNGQYAGTVTEGDLLWHMK 60 Query: 72 DSGGAVTFENASKYLLKDVPLRMNNLPVSIDADMEDLINLAKVQNFVPVVDDMNRFIGIV 131 +S G +TFENASK+LLKDVP RM+ PVSIDA MEDLINLAKVQNFVPVVDDMNRFIGIV Sbjct: 61 NSEGKITFENASKFLLKDVPFRMDIKPVSIDARMEDLINLAKVQNFVPVVDDMNRFIGIV 120 Query: 132 RRSQIIEYCEKVVSRQSQES 151 RRS IIEYCE+ VS+++ ES Sbjct: 121 RRSLIIEYCERFVSKETMES 140 >B1DC35.1 B1DC35_9BACL CBS domain containing membrane protein Length = 142 Score = 202 bits (514), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 98/133 (73%), Positives = 112/133 (84%), Gaps = 1/133 (0%) Query: 12 MNIAFFLLPKQEVACVTLDSTLRQTLERMEFHRYTAVPILNRNGEYAGTVTEGDLLWYMK 71 MNIAFFLLPKQEV VT D+TLRQTLE+ME HRY+AVPI+N G YAGTVTEGDLLWYMK Sbjct: 1 MNIAFFLLPKQEVITVTQDATLRQTLEKMEHHRYSAVPIINEEGGYAGTVTEGDLLWYMK 60 Query: 72 DSGGAVTFENASKYLLKDVPLRMNNLPVSIDADMEDLINLAKVQNFVPVVDDMNRFIGIV 131 ++ G V+FENA+K L+DVPLRM N V IDADM+DLI LAKVQNFVPVVDD FIGIV Sbjct: 61 NTPG-VSFENANKVKLQDVPLRMMNRSVRIDADMKDLIALAKVQNFVPVVDDRGHFIGIV 119 Query: 132 RRSQIIEYCEKVV 144 RRS+II+YC+ + Sbjct: 120 RRSEIIDYCQSFI 132 >B9DZU5.1 B9DZU5_CLOK1 Putative uncharacterized protein Length = 152 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 77/129 (59%), Positives = 103/129 (79%), Gaps = 1/129 (0%) Query: 12 MNIAFFLLPKQEVACVTLDSTLRQTLERMEFHRYTAVPILNRNGEYAGTVTEGDLLWYMK 71 MNIAFFL PK++V C TL+S++RQ LERME +RYTA+P+++ G+Y GT+TEGDLLW +K Sbjct: 9 MNIAFFLTPKEDVVCETLNSSMRQALERMEKYRYTAIPLIDNKGKYVGTLTEGDLLWKLK 68 Query: 72 DSGGAVTFENASKYLLKDVPLRMNNLPVSIDADMEDLINLAKVQNFVPVVDDMNRFIGIV 131 D+ F+N SK LLK++P MNN PV I+++MEDL++LA QNFVPV+DD + FIGI+ Sbjct: 69 DT-QEFNFKNTSKILLKEIPRHMNNKPVRINSNMEDLVSLAVNQNFVPVIDDNDVFIGII 127 Query: 132 RRSQIIEYC 140 +RS II YC Sbjct: 128 KRSDIINYC 136 >A5N6C5.1 A5N6C5_CLOK5 Putative uncharacterized protein Length = 144 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 77/129 (59%), Positives = 103/129 (79%), Gaps = 1/129 (0%) Query: 12 MNIAFFLLPKQEVACVTLDSTLRQTLERMEFHRYTAVPILNRNGEYAGTVTEGDLLWYMK 71 MNIAFFL PK++V C TL+S++RQ LERME +RYTA+P+++ G+Y GT+TEGDLLW +K Sbjct: 1 MNIAFFLTPKEDVVCETLNSSMRQALERMEKYRYTAIPLIDNKGKYVGTLTEGDLLWKLK 60 Query: 72 DSGGAVTFENASKYLLKDVPLRMNNLPVSIDADMEDLINLAKVQNFVPVVDDMNRFIGIV 131 D+ F+N SK LLK++P MNN PV I+++MEDL++LA QNFVPV+DD + FIGI+ Sbjct: 61 DT-QEFNFKNTSKILLKEIPRHMNNKPVRINSNMEDLVSLAVNQNFVPVIDDNDVFIGII 119 Query: 132 RRSQIIEYC 140 +RS II YC Sbjct: 120 KRSDIINYC 128 >Q97D09.1 Q97D09_CLOAB Two CBS domain containing protein Length = 140 Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 77/129 (59%), Positives = 99/129 (76%), Gaps = 1/129 (0%) Query: 12 MNIAFFLLPKQEVACVTLDSTLRQTLERMEFHRYTAVPILNRNGEYAGTVTEGDLLWYMK 71 MNIAFFL PK EV + ST+RQ LERME+HRYTA+PIL+ NG+Y GT+TEGDLLW +K Sbjct: 1 MNIAFFLTPKNEVIYEKITSTMRQALERMEYHRYTAIPILDDNGKYIGTLTEGDLLWKLK 60 Query: 72 DSGGAVTFENASKYLLKDVPLRMNNLPVSIDADMEDLINLAKVQNFVPVVDDMNRFIGIV 131 ++ + F+ +K +KD+P MNN PV ID+D+EDLI+ + QNFVPVVDD N FIGI+ Sbjct: 61 NT-PEIDFQTTNKVSIKDIPRHMNNRPVHIDSDIEDLISKSVSQNFVPVVDDNNVFIGII 119 Query: 132 RRSQIIEYC 140 +RS I+ YC Sbjct: 120 KRSDIMNYC 128 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 869,183,810 Number of extensions: 34642457 Number of successful extensions: 113391 Number of sequences better than 1.0e-05: 81 Number of HSP's gapped: 113417 Number of HSP's successfully gapped: 81 Length of query: 152 Length of database: 3,060,696,203 Length adjustment: 114 Effective length of query: 38 Effective length of database: 1,986,700,493 Effective search space: 75494618734 Effective search space used: 75494618734 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)