BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0001.p (298 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8Q3.1 B3K8Q3_9BACI YybS 231 5e-59 B1DC37.1 B1DC37_9BACL Putative uncharacterized protein 143 2e-32 A8FJD4.1 A8FJD4_BACP2 Putative uncharacterized protein yybS 73 3e-11 Q9K5Q6.1 Q9K5Q6_BACHD BH4032 protein 68 1e-09 C2Y2I6.1 C2Y2I6_BACCE Putative uncharacterized protein 62 6e-08 >B3K8Q3.1 B3K8Q3_9BACI YybS Length = 305 Score = 231 bits (590), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 116/296 (39%), Positives = 167/296 (56%) Query: 3 WSIAYXXXXXXXXXXXXXXXXXFMIIPAVVLFTTLNTKQFIIHILPVLLIVGLITPVYVL 62 WS+ Y +++P +LFT LNTK FI+H++PV LI LI P+Y+L Sbjct: 10 WSVVYLLLLLSLLTPFSIVTAFLLVLPVAILFTALNTKSFIMHVVPVWLIALLIHPIYLL 69 Query: 63 IAVYFLIPALVMGRWYKKRSSAMSTLLAGMITIXXXXXXXXXXXXXXXXXXXTTYVNDVL 122 +A+YF IP +VMG Y+KR +AM L GM + + YV++++ Sbjct: 70 LAIYFAIPGIVMGYLYRKRKAAMQVLKYGMAVMLVELLVLLMISTAFFQLNLSEYVDEIV 129 Query: 123 QMVNSPLSELGAGNPLMSELKLSSEDVSTISHMTVQIIPMTLIISSFMIAVITHSIVRPI 182 +M +PL+E+G L + + D I T++++P +IISSF++ V+TH++ RP Sbjct: 130 KMTTAPLTEMGVEGGLGGQFLGTELDTQLIKDQTMRLVPFAMIISSFLMTVVTHALARPT 189 Query: 183 LNSMEYAVPRMKPAREWRLPRSFIWYYXXXXXXXXXXXXADSGFMPMISDNLLPLLRIAF 242 LNSM +VPR+KPAREW LPRS IWYY +D+ FM MI N PLL+I F Sbjct: 190 LNSMGLSVPRLKPAREWMLPRSLIWYYLLIFFINIATVNSDNTFMKMIVANATPLLQICF 249 Query: 243 IIQTIGFLFFLVYERKWSKXXXXXXXXXXXXMPGLWIIGIVDLAFPLRELVTKSKR 298 +IQ + F ++L +ERKW P IIGI+DLAFPLR+ +K+KR Sbjct: 250 MIQALSFFYYLAHERKWHPIAPLLTAIPIVLFPPAMIIGILDLAFPLRQAFSKNKR 305 >B1DC37.1 B1DC37_9BACL Putative uncharacterized protein Length = 303 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/272 (31%), Positives = 149/272 (54%), Gaps = 6/272 (2%) Query: 26 MIIPAVVLFTTLNTKQFIIHILPVLLIVGLI-TPVYVLIAVYFLIPALVMGRWYKKRSSA 84 +++P V+L+TTL+T+ F++H++PV +I +I P ++IA++FLIPA+VMG+ Y+K++SA Sbjct: 36 LMVPYVILYTTLSTRSFLLHLVPVWIIAAVILGPSVLIIALFFLIPAMVMGQMYRKKASA 95 Query: 85 MSTLLAGMITIXXXXXXXXXXXXXXXXXXXTTYVNDVLQMVNSPLSELGAGNPLMSELKL 144 L +TI +++ + + V S +++L + + L E Sbjct: 96 PYILRRTTLTILFCLLAELLIFEGVLN---QSFIEQIGEFVRSLVTDLDSEHVLPKEW-- 150 Query: 145 SSEDVSTISHMTVQIIPMTLIISSFMIAVITHSIVRPILNSMEYAVPRMKPAREWRLPRS 204 +S+ +I + + IP +I+ SF+ AV+T R L S +P M A++W LPR Sbjct: 151 NSDYTESIIKIMIHSIPQAIILISFVYAVVTQYFARKALASSIEDIPTMPKAKDWMLPRI 210 Query: 205 FIWYYXXXXXXXXXXXXADSGFMPMISDNLLPLLRIAFIIQTIGFLFFLVYERKWSKXXX 264 ++YY S F + N++PL++ AF IQ IGF F++ ++R+W+K Sbjct: 211 MVFYYLVVYILQMFADSTSSSFYSVALMNVVPLMKYAFTIQAIGFFFYIAHQRRWNKAVP 270 Query: 265 XXXXXXXXXMPGLWIIGIVDLAFPLRELVTKS 296 P L +IG++D AFP+R+ +KS Sbjct: 271 VIIAIPLLIFPPLSLIGVLDAAFPIRKSFSKS 302 >A8FJD4.1 A8FJD4_BACP2 Putative uncharacterized protein yybS Length = 318 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 16/243 (6%) Query: 61 VLIAVYFLIPALVMGRWYKKRSSAMSTLLAGMI---TIXXXXXXXXXXXXXXXXXXXTTY 117 VLIAV L MG +Y +R + + G+I + Sbjct: 85 VLIAV-----GLGMGVFYSRRQPGNAIIAGGLIYLFSFLISFIVSVQLFQIDIMNIAKES 139 Query: 118 VNDVLQMVNSPLSELGAGNPLMSELKLSSEDVSTISHMTVQIIPMTLIISSFMIAVITHS 177 + ++ MV S L + GA E+ + + + +P+ L+I++ ++A + H Sbjct: 140 IEQMMPMVESTLKQSGASE---KEIAKQLKQFKELQDTALNALPVALLITATLMAFVNHW 196 Query: 178 IVRPILNSMEYAVPRMKPAREWRLPRSFIWYYXXXXXXXXXXXXADSGFMPMISDNLLPL 237 VRP++ +P +K ++ RLP+S +WYY S F+ ++ + + Sbjct: 197 FVRPLIKRFVSDMPVLKKFKDLRLPKSMVWYYLLTLLLMLIQTEKGS-FLWLVQSSAFKI 255 Query: 238 LRIAFIIQTIGFLFFLVYERKWSKXXXXXXXXXXXXMPGLW----IIGIVDLAFPLRELV 293 L I +IQ F+F+ +E+ SK P + IIGI D+ F LRE V Sbjct: 256 LFILVLIQGFSFIFYYCHEKGISKAVPIFAIVLGVLYPPVGVVVRIIGIADIGFDLREKV 315 Query: 294 TKS 296 Sbjct: 316 KNK 318 >Q9K5Q6.1 Q9K5Q6_BACHD BH4032 protein Length = 312 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 92/228 (40%), Gaps = 13/228 (5%) Query: 71 ALVMGRWYKKRSSAMSTLLAGMITIXXXXXXXXXXXXXXXXXXXTTYVNDVLQMVNSPLS 130 +VMG Y++ S + LL G ++ + ++ Sbjct: 84 GVVMGELYRREKSPFAVLLGGSLSNIAWVLLLFISSIVIMDVNPLVAAQETMRQSMQTAE 143 Query: 131 EL--GAGNPLMSELKLSSEDVSTISHMTVQIIPMTLIISSFMIAVITHSIVRPILNSMEY 188 +L G G LK E ++ + ++ P ++I ++A +T + PIL + + Sbjct: 144 QLIIGLGQEPSEALKQMEESINQLFYLG----PAMVVICGTLLAAVTQLVAAPILKRLRH 199 Query: 189 AVPRMKPAREWRLPRSFIWYYXXXXXXXXXXXXADSGFMPMISD-NLLPLLRIAFIIQTI 247 V + P R W PRSF++YY + G MP I+ NLLP+L I IQ Sbjct: 200 EVKPLPPFRTWSFPRSFLFYYLAVVVLFMIGF--EEGSMPYIAVWNLLPVLEIIMAIQGF 257 Query: 248 GFLFFLVYERKWSKXX-XXXXXXXXXXMPGLW---IIGIVDLAFPLRE 291 +F + + +K P L+ IIGI+DL F LR+ Sbjct: 258 AVIFAYFHTKGVAKAVPVIIMILCIIVTPLLYLVRIIGIIDLGFDLRK 305 >C2Y2I6.1 C2Y2I6_BACCE Putative uncharacterized protein Length = 311 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 55/256 (21%), Positives = 109/256 (42%), Gaps = 9/256 (3%) Query: 42 FIIHILPVLLIVGLITPVYVLIAVYFLIPALVMGRWYKKRSSAMSTLLAGMITIXXXXXX 101 F+I + + + V + P+ ++ V F + +V+G YKK ++ L+AG + Sbjct: 56 FMIFVAALFVTVIVSQPISLIKTVMFGLIGVVLGYMYKKGKKSVEILIAGTLAYLIGMML 115 Query: 102 XXXXXXXXXXXXXTTYVNDVLQ--MVNSPLSELGAGNPLMSELKLSSEDVSTISHMTVQI 159 + ++ MV S AG P+ E K E + ++ + + Sbjct: 116 IYVGSIKFFNIDLMKQMQNMFNESMVQSEKIANAAGMPVSKEQK---ELFAQMNDILQTL 172 Query: 160 IPMTLIISSFMIAVITHSIVRPILNSMEYAVPRMKPAREWRLPRSFIWYYXXXXXXXXXX 219 P L++ S + IT I +L ++Y V ++ +LP+S +WYY Sbjct: 173 FPSILVLVSVCFSWITVLISGSVLRKLKYGVTPWPKFKDIQLPKSIVWYYVIFILLSTFI 232 Query: 220 XXADSGFMPMISDNLLPLLRIAFIIQTIGFLFFLVYERKWSKXXXXXXXXXXXXMPGLW- 278 + ++ M+ NL + + ++Q + F+ FL +++ ++K +P L+ Sbjct: 233 KVEPTSYLHMVFSNLYVIFALLLVLQGLTFITFLAHKKGFTKGVPIISFIVCMFIPMLFP 292 Query: 279 ---IIGIVDLAFPLRE 291 I+GI+DL LR Sbjct: 293 LVSILGIIDLGISLRS 308 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,317,130,070 Number of extensions: 41456856 Number of successful extensions: 176710 Number of sequences better than 1.0e-05: 97 Number of HSP's gapped: 176554 Number of HSP's successfully gapped: 97 Length of query: 298 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 163 Effective length of database: 1,788,859,178 Effective search space: 291584046014 Effective search space used: 291584046014 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)