BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0003.p (257 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2W785.1 C2W785_BACCE LysE/yggA 257 6e-67 C2ZNG4.1 C2ZNG4_BACCE LysE/yggA 245 3e-63 C2Z6S5.1 C2Z6S5_BACCE LysE/yggA 245 3e-63 C3BJF0.1 C3BJF0_9BACI LysE/yggA 244 6e-63 C3B2K2.1 C3B2K2_BACMY LysE/yggA 244 7e-63 >C2W785.1 C2W785_BACCE LysE/yggA Length = 229 Score = 257 bits (657), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 116/199 (58%), Positives = 155/199 (77%) Query: 51 RRMLEAIVHGILLAFGLILPLGVQNIFVFNQGALQPRFRRVVPVVLTAAVCDTLLIAAAV 110 M+EAI+HG++LAFGLILPLGVQN+FVFNQGA QP F R +PVVLTA++CDT+LI AV Sbjct: 25 NNMIEAILHGMILAFGLILPLGVQNVFVFNQGASQPNFLRAIPVVLTASICDTILILIAV 84 Query: 111 GGISLVLLSVEWVTPIVYGAGILFLCIMGWKIWNAAPGERDREARVLSLKGQVGYALSVS 170 G+SL+LL+ W+T I+Y G FL MGW IW + + E + +++K Q+ +A SVS Sbjct: 85 QGVSLMLLTFSWLTTILYVIGFFFLIYMGWTIWKSESTKETIEVKKMTIKKQIIFAASVS 144 Query: 171 LLNPHALLDTVGVIGTNSLQYTGAERWXXXXXXXGISWMWFLSLAAAGRVLGRLDSSGRV 230 LLNPHA+LDT+GVIGTNS+QY G+E+W +SW+WF+SLA AGR+LG++DSSG + Sbjct: 145 LLNPHAILDTIGVIGTNSIQYVGSEKWAFTLTTVTVSWLWFISLALAGRMLGKVDSSGTI 204 Query: 231 IRLLNTVSALLIWGIAVYM 249 I LLN +SA++IWG+A+YM Sbjct: 205 ISLLNKISAVIIWGVALYM 223 >C2ZNG4.1 C2ZNG4_BACCE LysE/yggA Length = 205 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 116/197 (58%), Positives = 148/197 (75%) Query: 53 MLEAIVHGILLAFGLILPLGVQNIFVFNQGALQPRFRRVVPVVLTAAVCDTLLIAAAVGG 112 M EAI+HGI+LAFGLI+PLGVQN+FVFNQGA QP RV PVVLTA++CDTLLI AV G Sbjct: 2 MSEAIIHGIILAFGLIIPLGVQNVFVFNQGASQPNIWRVAPVVLTASICDTLLILIAVQG 61 Query: 113 ISLVLLSVEWVTPIVYGAGILFLCIMGWKIWNAAPGERDREARVLSLKGQVGYALSVSLL 172 +SLVLL+ W+T +Y G FL MGW IW + P ++ + + LK Q+ +A SVSLL Sbjct: 62 VSLVLLTFSWLTTTLYLIGFFFLMYMGWVIWRSDPANDVKQEKSMPLKNQIIFAASVSLL 121 Query: 173 NPHALLDTVGVIGTNSLQYTGAERWXXXXXXXGISWMWFLSLAAAGRVLGRLDSSGRVIR 232 NPHA+LDT+GVIGTNS+QY G+E+W +SW+WF+SLA AG+ L R+DS+G+ I Sbjct: 122 NPHAILDTIGVIGTNSIQYIGSEKWAFTFATIIVSWIWFISLALAGKFLKRIDSTGKTIL 181 Query: 233 LLNTVSALLIWGIAVYM 249 LLN S L+IWG+A+YM Sbjct: 182 LLNKFSGLIIWGVALYM 198 >C2Z6S5.1 C2Z6S5_BACCE LysE/yggA Length = 205 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 116/197 (58%), Positives = 148/197 (75%) Query: 53 MLEAIVHGILLAFGLILPLGVQNIFVFNQGALQPRFRRVVPVVLTAAVCDTLLIAAAVGG 112 M EAI+HGI+LAFGLI+PLGVQN+FVFNQGA QP RV PVVLTA++CDTLLI AV G Sbjct: 2 MSEAIIHGIILAFGLIIPLGVQNVFVFNQGASQPNIWRVAPVVLTASICDTLLILIAVQG 61 Query: 113 ISLVLLSVEWVTPIVYGAGILFLCIMGWKIWNAAPGERDREARVLSLKGQVGYALSVSLL 172 +SLVLL+ W+T +Y G FL MGW IW + P ++ + + LK Q+ +A SVSLL Sbjct: 62 VSLVLLTFSWLTTTLYLIGFFFLMYMGWVIWRSDPANDVKQEKSMPLKNQIIFAASVSLL 121 Query: 173 NPHALLDTVGVIGTNSLQYTGAERWXXXXXXXGISWMWFLSLAAAGRVLGRLDSSGRVIR 232 NPHA+LDT+GVIGTNS+QY G+E+W +SW+WF+SLA AG+ L R+DS+G+ I Sbjct: 122 NPHAILDTIGVIGTNSIQYIGSEKWAFTFATIIVSWIWFISLALAGKFLKRIDSTGKTIL 181 Query: 233 LLNTVSALLIWGIAVYM 249 LLN S L+IWG+A+YM Sbjct: 182 LLNKFSGLIIWGVALYM 198 >C3BJF0.1 C3BJF0_9BACI LysE/yggA Length = 204 Score = 244 bits (622), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 112/199 (56%), Positives = 150/199 (75%) Query: 51 RRMLEAIVHGILLAFGLILPLGVQNIFVFNQGALQPRFRRVVPVVLTAAVCDTLLIAAAV 110 +M+EAI+HG++LAFGLI+PLGVQN+FVFNQGA QP R PVVLTA++CDT+LI AV Sbjct: 4 NKMIEAILHGMVLAFGLIIPLGVQNVFVFNQGASQPNILRATPVVLTASICDTILILIAV 63 Query: 111 GGISLVLLSVEWVTPIVYGAGILFLCIMGWKIWNAAPGERDREARVLSLKGQVGYALSVS 170 G+SL+LL+ W+T I+Y G FL MGW IW + + EA+ +++K Q+ +A SVS Sbjct: 64 QGVSLMLLTFSWLTTILYVIGFFFLIYMGWMIWKSDSTKETIEAKTMTIKKQIIFAASVS 123 Query: 171 LLNPHALLDTVGVIGTNSLQYTGAERWXXXXXXXGISWMWFLSLAAAGRVLGRLDSSGRV 230 LLNPHA+LDT+GVIGTNS+QY G E+W +SW+WF+ LA AG VLG+L+SSG Sbjct: 124 LLNPHAILDTIGVIGTNSIQYVGNEKWAFTFTTIIVSWLWFIGLAFAGHVLGKLNSSGNS 183 Query: 231 IRLLNTVSALLIWGIAVYM 249 I +LN +S ++IWG+A+YM Sbjct: 184 IAILNKISGVIIWGVALYM 202 >C3B2K2.1 C3B2K2_BACMY LysE/yggA Length = 208 Score = 244 bits (622), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 112/199 (56%), Positives = 150/199 (75%) Query: 51 RRMLEAIVHGILLAFGLILPLGVQNIFVFNQGALQPRFRRVVPVVLTAAVCDTLLIAAAV 110 +M+EAI+HG++LAFGLI+PLGVQN+FVFNQGA QP R PVVLTA++CDT+LI AV Sbjct: 4 NKMIEAILHGMVLAFGLIIPLGVQNVFVFNQGASQPNILRATPVVLTASICDTILILIAV 63 Query: 111 GGISLVLLSVEWVTPIVYGAGILFLCIMGWKIWNAAPGERDREARVLSLKGQVGYALSVS 170 G+SL+LL+ W+T I+Y G FL MGW IW + + EA+ +++K Q+ +A SVS Sbjct: 64 QGVSLMLLTFSWLTTILYVIGFFFLIYMGWMIWKSDSTKETIEAKTMTIKKQIIFAASVS 123 Query: 171 LLNPHALLDTVGVIGTNSLQYTGAERWXXXXXXXGISWMWFLSLAAAGRVLGRLDSSGRV 230 LLNPHA+LDT+GVIGTNS+QY G E+W +SW+WF+ LA AG VLG+L+SSG Sbjct: 124 LLNPHAILDTIGVIGTNSIQYVGNEKWAFAFTTIIVSWLWFIGLAFAGHVLGKLNSSGNS 183 Query: 231 IRLLNTVSALLIWGIAVYM 249 I +LN +S ++IWG+A+YM Sbjct: 184 IAILNKISGVIIWGVALYM 202 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.140 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,506,683,751 Number of extensions: 57432217 Number of successful extensions: 185690 Number of sequences better than 1.0e-05: 656 Number of HSP's gapped: 184738 Number of HSP's successfully gapped: 656 Length of query: 257 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 124 Effective length of database: 1,807,701,208 Effective search space: 224154949792 Effective search space used: 224154949792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)